Gene detail

Detailed information of PFX31218.1 in Stylophora pistillata

Genomic Location: Spis.scaffold39:1029462...1034291
NR annotation: no NCBI-NR hit recorded
Species abbreviation SPIST · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-Spis4017_mrna

ATGACTTGTCGTGGAGTGGTAGCGATCGGACTTCGTCATGGTAACGATAAGACTGTAGTAGGTAGCGATGAGACTGTGGTTGGTAGCGAGGAGACTGTGGTTGGTAGCGAGGAGACTGTGGTTGGTAGCGATGAGACTGTGGTTGGTAGCGATCAGACTGTGGTTGGTAGCGATGAGACTGTGGTTGGTAGCCTGGTAGCGAAAGTACTTGGGTTACATGACAGATGTTTAGGCAGTGACATTATGGCGGCTCTTTCGAGGTGTACGGTGAGAAGCTTGAagacaaaacgttgcttgatcTCGAGTTTAGGAGGTTCACATTTACCAAAACGCTCTCGAGAGGTTACGTTAGTGCTATCCCTGGGAAGCCTACAAGTGGCACAAAGGACATATTGTAGCCCCGTTAAGGAAACGTCTGAGGAAGATTTAAAAAACAGACCAATACGTTTTTCTACCTCGAGAGCACGGAGTATGACAGTTGGTCAAACGctgggagaaagaaaaaagagcacATCTATGGTCACGGTCTATGTGAGTCTCACAATCATGGTCATATTGACTTACATTATTTTCTTCTTGCCACCCAATAAACAAGATGAAGAAGCATTGGATATTCTAAATTCCAGCATGGTGGCAAATGAGCAGGACAAAGGACAATGATGTGGGAGGACACCTGTTTCAAAAAGTGTTCTTTTGGCTCTGGAAATATATATTTGGCATATAAATTCACTTTCTGAGAATTCCATtccaatgtttctttttcagatgGTCTGGAAAGGAAGTCATTATTAACCCTTACCAGACTTGAAATGTTGCTATGGATCATGTAAGCCAGCAGGACGTTTGAGAATTTATATAATTTGGAACAATagacaaatttgaaatttgttgttTAAGGAAGAAGTTTTCTTGTCTCTCACAACTGATGTAATTAATACATTTTGTGGTTAGCCAGTGTTGAGGatttagttttacatttgtgtGCCACTTCTAGGTGATGGTTGTCTGAATTTTCTCTATCTGTGTTGATCAGCTAAAGAAAGGCTTACTGAAAGAAACCAAACACACCTGAGTGGGCTGGATGGTTCAAGCTCAGATTTCATAGTGATTAAAAATGTGCTATCAAACCTGGTTTAACCCTGAAACTTCCAGAAGTgtttaacatgtaacttctccccttaatatccttacattatccTACAGataggttatgagaatactcacacttatcaggtagaagttgttttcttgatctaacaacaaattctcgcAACTAATCTACAAGAAATGTGCAGTGGCTAGAGAGGAGAATGAAATATCAGATCTTGAGACTTGTAGGGTTAACTCAccaagaaaataataatattccACTCctaatttaataaaataacaaagcGGTATAGTTactaaagttaaatttttaCTGAAAGGACTTAAAACTTTGCATTCCCACTCTTGTAAAATTGTTAACAGTACATCAAATATGATTTTCTGATGAACTGTAGACAATCCTATTTGAAACCCTAGGCTctaattttgtcttttataaTTTGTTCTTCAgatgaatttgaaaacattgttcTAGCATTGTTCTTTCAGTTATAAGATTGTTTTCCAGAACACAATTATGTATGCAGAACAGAAACATCTTAAAAGATATTACTGAACCCTTTCGCTACCAGAAGCAATTAACTTATAACTTCTCCCAAAATTCTTAACATGTTAGCAATTAAACAGGTAAAgagaatgctcaaacttatcGGGTAGaggttgttgtcttgatctgaCCTCAAATTCCTGTaactaatttgcaaggaaatgtgtagcaggtagagggaagaattaacaagcAGATTGTGGGAGGGTAAATTGAGGTGAAGATGTTACTGTAATTGATTGGATAACTTTTCCTTTTGCAAGCTAGGTTGAGTCAGAAAAAAGCGGAAGCAAATCAAtaagacacacaaaaaaaatgagTGATTAAATGAAGAATGAACAAAGTTATTTGACGCATTAAGATGTCAGTGTTAAGCATGGCAGTTTATTTGGAGGCAACCTCCTAGATTTGGGTTATTTCACAAGGATTTACAACAGGAGCCAAAATGAAACTGATGGGTAGTGCTGGATTTTTACTGAATGCAGGGTCTGAATTAAAATGTGTAACGAGATTAGAATTTACTGCTAATAACAACAATTGACTTTTTTGTACACAACTCAATTATGTATGAATATTTTAATCATCCTCTGATGACAGTGTGTGTTGCAATTTTGAATTACATGTTTAATGCT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15013 all species →	CCSMST1	CCSMST1 family	Family	Interproscan
PF21300 all species →	LbR_Ice_bind	Grass antifreeze beta roll	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011049 all species →	Homologous_superfamily	Serralysin-like metalloprotease, C-terminal	Interproscan
IPR029160 all species →	Family	Ubiquinol-cytochrome-c reductase complex assembly factor 4	Interproscan
IPR048518 all species →	Repeat	Ice-binding protein, beta roll	Interproscan

PANTHER

No PANTHER signature was detected for PFX31218.1. This gene does have a gene model — the search simply returned no hit.

Gene Ontology

No Gene Ontology signature was detected for PFX31218.1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for PFX31218.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.