Gene detail

Detailed information of PFX31293.1 in Stylophora pistillata

Genomic Location: Spis.scaffold38:1032460...1051848
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-Spis3950_mrna

CAGAATCAGAGCGATGCCATCCGAAGGTGTTGAAGTGTTTTCAAATCCCCTGGCGCCGCCATCTTCTTCGGGTTCCTACACATCTCATCATGGCGGAGGGGTGCCAGCAGCTTTGACCAATGAAGATTTTCGCAAACTTTTGATGACCCCTCGGTCTGGGGTGCCATCTGTAGCTCCACCGTCAACAAAGTCATCAAGTCACAGCAGTAAGAGCGTGCCAAGCAGTATCCATTCACATCGTAGCAGTAGagataatgatgatgatgatgatgatgctgaAGTCGAAGGAGACGATGATGATCCttggtcaagaaggaggaaaaagaagaaATATTATGCAAAACTCAAGAAGATGGAGGAGGAAAGAGAGCAGGAGCTTGCAACTAAATACAGAGATAGAgccAGAGAACGACGAGATGGTCTTAATCCTGACTACCAATCAACAGACACCCTGAGCGCAACAGCCAATTACAGAGCAGTTGGTCCCACAGCAGAGGCaacGAACACTGCAGCAGAGCGCCGTCGCCAAGCTATCCAGGAGAGTAAGTTTCTTGGTGGTGACATGGAGCACACTCATCTTGTGAAAGGCCTAGACTTTGCCTTGTTACAGAAGGTTCGTAGTGAAATTGCTGAGGAAGATGAGGAAAATGAGGAACTGAGTgttaaaaaaccaaaacacaAGCAAAGGGACAAGGAAGAAGAAGATGGTGCAAATGAGATTGAGTTTACAACAAAACTGGGTCAAAAGATCTACAAATCGCTGTTCAGAAATCGGCCAGCAGATAGAAATGAACTATTTCAGCCAGGGCGAATGGCATACGTGTTTGACATTGAAGATGAATATGCTGAGAGTGATATACCCACAACTCTTATCAGGAGTAAAGCAGATTGCCCTGGAATTGAAACTCAAGCTACACTCACTACTAATGACATTGTCATCAACAAATTGACCCAGATTTTATTGTACTTACGCCAAGGCACCAGAGGAGGGAAAAAGGTCAAGAAGAAGGATAAAGGAAAGGAGAGagacaaaaatgataaacaggGACAAAAGATAAGAGGGCCTGAAGCGGATGAAAGTATCTTTGGAGAAATTGGGGATTATGATCCTACTGCAAGCACAAAAGagtatgaaaagaaacaaaaggtgaaagaaaaagacagaaagaAATCCAGGAATTCTAGCAGTTACTTTGAGGAGTCAGCTAAAAGAGAGGATGAGCAACAGTTTAGTAAAAAAGATGTTTCTGCTGAGGATTTTGCGAAGTCTGTCACACAGACGTTTGGCAAAAGGGAAATGGAACAAAGAGCTGCATGGGATTCAGTTGATCCAAAACGAAAGAAAAGAGACAAACATGCACGCAAAGTGAAAGATGCTAATTACATTCCAGATAGCTATTCAGAGTGTTATCCAGGTGCCGTTGATATGCCTTATGACAGTGATGAGGAAGCAGATTACAGTAAAATGGATTTGGGTAACAAGAAAGGTCCCATTAAAAGGTGGGACTTTGAGACAGAAGAGGATTATCACAGCTACATGGAAAGTAGGGAAGCTCTTCCAAAAGCTGCCTTTCAGTTTGGAATTAAGATGTCTGAAGGACGCAAAACAAGACGTGCTGGTCCTAAAGATGAGAAGGCTAAATTAGACAGGGACTGGCAGAAAATTAGTCAGatgTTGAGTAAAAGGAAAGGAGAAGAAGGGAAAGGAGACTCAGATGGCAAGAGACGAAAGCATAGGGATTAAGCAACTTACAAATTTGGAAGATTATTGAAAGTCCTCAAGTGTTTATTGTGTCTTTTAGAAAACGCACTCATGACTACATTGCAAAAAAATCAACTGTTAACTTTTTAAAGTAGAACTTTGGAATTGTAATTATTATAGTTTGTTAAatctttgattattttttctttggtaaGCTGTGACAAGGATCTGGCATTTATCAATTTAAGATTGTCACAAAATAGTCATCCTCCAAAATATAAAGTTGTTGATTTTCATCGCTTGTTTTCAATGCAACATATTAAAACCCTTAGGGGAAGTTTATTTAAATAAGGGATAAGGTTGCAAGGAGATGGTTTGTTGGAATTACCCTCATTATGTGGTGCAACTTAAAACGTAGGTAAAAAGCAGAACTGTACTTTTTAGATTCAGAGCTGGGGTATTCTTAACTGATACTTCCCTCAGTCTCTAAGTTCTAAGCTGTGCGGCAGTTTAAGTCACACGGGGATCGAGTAGAAAATAATGTTAGTGAGTACATTTGTAGGGAAAGTTTCCAATTTGACGACCCGATTTACCTACACTGTAGTGATTGAAGCCCTAAGTGAAAGTGAGACAAAGTCATGTTAAATGAGatgtttcaaagaaaatttcagttaaCTTATTGTTTTCAAAGACAAGCAGTGTGGTTAGCAGTCTAGCATTTCAAGTATTAtaactcactttttttttctctggtgtAAAACATGGTGACTTTGAAAGGTGCTGAGCCGAGAGGCTGTGTCATGTGTTGTAATATTACCGACAGTGTGTTAGGTTGGGTACCataatattgtaataaaaaTTGACTGAAAGTAGT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07807 all species →	RED_C	RED-like protein C-terminal region	Family	Interproscan
PF07808 all species →	RED_N	RED-like protein N-terminal region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012492 all species →	Domain	Protein RED, C-terminal	Interproscan
IPR012916 all species →	Domain	RED-like, N-terminal	Interproscan
IPR039896 all species →	Family	Protein Red-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12765 all species →	RED PROTEIN IK FACTOR CYTOKINE IK	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000398 all species →	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13109	IK, RED, RER; IK cytokine	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.