Gene detail

Detailed information of PFX31295.1 in Stylophora pistillata

Genomic Location: Spis.scaffold38:1055314...1072526
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

SHROOM2

ATGTACAAGTTCAATCAACGCACGAAGAGCTCGGGAGAGATCTTTGACGTTGTTCTCTCTGGAGGTTCGCCTTGGGGTTTTACATTGCAAGGGGGCAGTGAATTCAGAACGAAGCTTTGTGTTTTAAAGGTAACTCCTGGTGGCAAAGCAGATCTCTCTCTGGCTATTGCAGTTGGGGATGAAATTATAGCAATAAATGGTATTGAATGTGCATCCAGAGCAGAAGCCATTGAATTAGTAAGGTGTTCAAGACAGAAGCTTAAAATTGCTTTAAGAAGGGTGGGTGGTGGACCAAGCCCTGTTGCTCAGTCCAATGGTGGTGTCATTAAGAAGAGTGGTGATGTGGTCCCAAATCTGTACAAAACAGCAAATGATTTTTATTCCACTTTTAATGTAGATAGACAGAAATTTGCTGAGATAACTCAGAACAAAAAATCTAGCAATATTTTCGATTCAACCGATAACCTTAGTGCTTCGCATGAAAACTTGTTAGAAAGCTATCGCCAAGTGGGCAATCAGCGGAATTTTGTCAATTCACCCACCATGGAGGAAACTGGTGACAGGTTGTCAAGGTCATCAACAGAGATAGCTAATGGAAGAACAAGTCCAGAAGTGGATGGTCTGAGTGGTGTCAGTCTCCCAGAGGGTCAATGGCCTGTGATGCATCATCATCATCAACGCATGCATACCAGTCCTGGCCGTATACAGAAGGTGACAGTAAAGAGCACCAACATAAAGTCACCAGTGTCACCAAGGGGTTCCCCACCAGACAAAGACACTGAAAATCAACACCCAACCCGTAAGAACCCCAACGATTGGGTTGGGCGGTGGCTGATGGATCAACCAGGACCCTTACATCATCAACTTAGTGTGACAAACAGTGGCTCAGCAACACTAGATTACAGAGATACACCAGACAGAAGAATAAGTCTGCATGAGAGGACATCTGCTAACAAGAGCCAATCGCTCCCACGAAGCAAAAGTTTCGGTGGCCCCACTTCTTACGGAGTCACAGTAACAGCTACGGCGGTGAAACGAAACGAATTCGGTCTCCCAGCGAATAACCAAAGAACAGCGCAACGCTATAGTTCATCAAACTTGCTACAAGAAAGGCAACAGCGGGTGGGCCTTGTCAGTGACATACATCCAAACGAGATATCTGCACGCCAAGCAGATATGTCTTGGAACTCGTCAGTGTATGCACAGCCAGGTGACAGCGTAGAACTGCGCTTGCCTAGGGAGATGATGGGTCCCAAAATGACTACAAGTGAGAGCACTTCGAGCCTCGATTCCATTGGTACAATGGATTCCTCTGTGAGTGGTGCGCGCAGACAAGGACCCGCTCCTCCCCCAAGACGCAGCGTGTCAAAGCTGCTGAGCTCATTCAGGACAAGCGGTCGCCGTCGCGTCCCTGATGAGGTACAGATTCCACCGAGGTTCGGTGCAGTTTCGCGAATATCGAGAATTGCCAGCGATCAGCCGAAGCATAGTGTGTCCAGGTCCTGGCCCACAGACCACGTGGACGGTAAGTCTACCGGAAATGAGGCGTCAAGGCAGTCTTGGCATGCCGAGCCAGCAGTCGCGTCCCACCAGGACAGAAGAGAAGCGAATTCCTCAATTTCCTCTTCATCCGGCGATGCTACGCCGGAAAGAAAAATATCCAAGACTTCGAGCATGAGGTATAGTTCATCTGTCGTCATCAAAACCATGCGTTCGTCATCCTCTTCCTCTATGGATGAGAAAAGCACTGCTCCCACGGTGTACCGGTCTGGCCAGATTGGACTGGAAGCTGAGAAAACCCCGTCGGATGATCGGGCCCAAACTCTCCCAGCCAGGCAACAATTTAGCGATGTAAACCCGCCGGCGAAAATTACCGACGATTTTAGTCGTTGGCCGCCTTCAAACGAGAGGGAAACTGCGGGAAAAAACAGATATGAAGACACACCGATATTGCAAAGACTTATGAAGGATAATGCCAAGAGTTTGGACACGTCTCCAAGCGTCAAATCAAGAATCGCCAATTTCGAAGGGGGGTTGAAGAAATCAGCTCCCGGGCCTCCACCTCAAGAGCGACCTCGCCTCCAGCCCCGTTCATTCAGTCAAGGAAAACTGGACCTTTCTCAGCAACCATTAAAAGAATCGATCGCAAATCAGTCCTCGTCCATGGATTCACTTCTCGATACCAGGTCTCCTGGGAAACACGACTCAGCTTCTAAATCCCAAGACCAAGATAAATCACCGATCCAAGGCGACCAAGATCGAGCGAAACAATGGGAAGCGAGCCTGCGTAGATCGGACGAAGAATTCAGGAGACCGTCGCGGAGCACGTCCAATGCTCAAAACAGTCTCGGTTCAAGGGAACCAAGGCTCTATATTGAAACCTCGCCGTTGCGTCAGGAACGACAGCAAGCTCTGGAAAAGCCATTGAAGCAGGTGGAAATCTCCACACGAAATGAAAACAGGGTTAATTTGGCGACAGAAAGAGTTATTCCACAGAACGAAAAGCCTTCATTAAACTCAAATATTCCCGACGTAGACTTCAGTAGAAAGTCAGCAGAAGAAGAACCTCCACATCCCTCAAATGAAGACGAAAACGACGTGTTTTGGGATGCGGATGATTCTTTGCCGCCTCCGCCCCCCTTGGAACTCCTCCACCCCCTAGAAATGTCACAAGACAACTTACCCTTGCCCTCCCCTCCACGGGAAGTTCTGGTCGAGTTTCCGTCATCGACAGAGGACTATGAATCGAGACGGGATCGACTTGAACAGGAGACACTTGAGCAAAACGGTGTGAATAGTAGTGATGTGATAAAACCTGTCGGATCTTTTGCGGTAGAATCGAGCGTGGAAACTAACCACAAAACCCAAGTCGAACTAAATGGACCAGGCAAGCTGGAAACTAGTGGATTATCCAGTACTGCGCTAGACTTCTCCGGTAGCACTGATCTGTCGTCAAATGATACATCTCTTACAGAGGAGAAGAAGTATATCTCCCCCAGGGCCCCTCCACCGGCTCCACTTGTAATAACGTCTACCCCTAGCGAATTTGAGGGGTCCAACGAGAGGGGCACTTGTTTAGATGTTCCCAACAGTCCTCGCAGTGCAAGTTCCAACACGTCCACGCCATCCGGAAGCCGCCCTAACAGTATGTTGAGTCCGAAACTGGTAGAATTGGACAAAGAAAAGGCTGATCTTGTGGAAAGCATGAAGCAGAAAATAGTGGATCTGAGATCGCAAATGGACGAAATTAAAGATGAAATCGATGGCAACGAGGCACTGGGGCAGAGAGTCACTAAGGTGGTGGAAGGAAAGACGAGCGCTACCCAGTTTTCTAAGTATCAGCTTTTTACAGGCGAGCTGAACAAGATTATAGGACTGTTACTGATACTCACACAGAGAATGCACAGATATGAAATGATGCTCCATGATTTGGACATGTCTGAAGAAGCCGACAGACAACAAAGAGATGTTTTGCTCGATAAAATCGACAAAGTCACTCTGCAACACGAGGAGGCTTGTAAAATCAAGGAAGTAAACGACAAGCGCGGTGAGGTAGTGTCCAGGATTTTAGAAAATTGCCTGGAAGAAGAGGAATATGCAGATTTTCAGTACTACATAGACATGAAAACGCAGCTCGCTCTTATGCACGCGGAAATTCGGGACAAGGTCAAGATGGGAGAGGAAAGGCTGAACACTTTAAATTCGACAAAGATCGACTGGAGCATTCTTAGTTTGACGTGA

Transcript

rna-Spis3952_mrna

GGCTACTCTGCCAAATTTGCATGCACAACAATTtacatttgcatatttttccCTGTTTGGGAGCTTTATTTGGCTTAGGAAAACATGTATCTACGTCTACCACGTATTTCCTGGAATGCCATGGCATCTTACGCAAGGCACTCTTCTTTGATTCTTTAGCGCAAGATGTACAAGTTCAATCAACGCACGAAGAGCTCGGGAGAGATCTTTGACGTTGTTCTCTCTGGAGGTTCGCCTTGGGGTTTTACATTGCAAGGGGGCAGTGAATTCAGAACGAAGCTTTGTGTTTTAAAGGTAACTCCTGGTGGCAAAGCAGATCTCTCTCTGGCTATTGCAGTTGGGGATGAAATTATAGCAATAAATGGTATTGAATGTGCATCCAGAGCAGAAGCCATTGAATTAGTAAGGTGTTCAAGACAGAAGCTTAAAATTGCTTTAAGAAGGGTGGGTGGTGGACCAAGCCCTGTTGCTCAGTCCAATGGTGGTGTCATTAAGAAGAGTGGTGATGTGGTCCCAAATCTGTACAAAACAGCAAATGATTTTTATTCCACTTTTAATGTAGATAGACAGAAATTTGCTGAGATAACTCAGAACAAAAAATCTAGCAATATTTTCGATTCAACCGATAACCTTAGTGCTTCGCATGAAAACTTGTTAGAAAGCTATCGCCAAGTGGGCAATCAGCGGAATTTTGTCAATTCACCCACCATGGAGGAAACTGGTGACAGGTTGTCAAGGTCATCAACAGAGATAGCTAATGGAAGAACAAGTCCAGAAGTGGATGGTCTGAGTGGTGTCAGTCTCCCAGAGGGTCAATGGCCTGTgatgcatcatcatcatcaacgcATGCATACCAGTCCTGGCCGTATACAGAAGGTGACAGTAAAGAGCACCAACATAAAGTCACCAGTGTCACCAAGGGGTTCCCCACCAGACAAAGACACTGAAAAtcaACACCCAACCCGTAAGAACCCCAACGATTGGGTTGGGCGGTGGCTGATGGATCAACCAGGACCCTTACATCATCAACTTAGTGTGACAAACAGTGGCTCAGCAACACTAGATTACAGAGATACACCAGACAGAAGAATAAGTCTGCATGAGAGGACATCTGCTAACAAGAGCCAATCGCTCCCACGAAGCAAAAGTTTCGGTGGCCCCACTTCTTACGGAGTCACAGTAACAGCTACGGCGGTGAAACGAAACGAATTCGGTCTCCCAGCGAATAACCAAAGAACAGCGCAACGCTATAGTTCATCAAACTTGCTACAAGAAAGGCAACAGCGGGTGGGCCTTGTCAGTGACATACATCCAAACGAGATATCTGCACGCCAAGCAGATATGTCTTGGAACTCGTCAGTGTATGCACAGCCAGGTGACAGCGTAGAACTGCGCTTGCCTAGGGAGATGATGGGTCCCAAAATGACTACAAGTGAGAGCACTTCGAGCCTCGATTCCATTGGTACAATGGATTCCTCTGTGAGTGGTGCGCGCAGACAAGGACCCGCTCCTCCCCCAAGACGCAGCGTGTCAAAGCTGCTGAGCTCATTCAGGACAAGCGGTCGCCGTCGCGTCCCTGATGAGGTACAGATTCCACCGAGGTTCGGTGCAGTTTCGCGAATATCGAGAATTGCCAGCGATCAGCCGAAGCATAGTGTGTCCAGGTCCTGGCCCACAGACCACGTGGACGGTAAGTCTACCGGAAATGAGGCGTCAAGGCAGTCTTGGCATGCCGAGCCAGCAGTCGCGTCCCACCAGGACAGAAGAGAAGCGAATTCCTCAATTTCCTCTTCATCCGGCGATGCTACGccggaaagaaaaatatccaagACTTCGAGCATGAGGTATAGTTCATCTGTCGTCATCAAAACCATGCGTTCGTCATCCTCTTCCTCTATGGATGAGAAAAGCACTGCTCCCACGGTGTACCGGTCTGGCCAGATTGGACTGGAAGCTGAGAAAACCCCGTCGGATGATCGGGCCCAAACTCTCCCAGCCAGGCAACAATTTAGCGATGTAAACCCGCCGGCGAAAATTACCGACGATTTTAGTCGTTGGCCGCCTTCAAACGAGAGGGAAACTGCGGGAAAAAACAGATATGAAGACACACCGATATTGCAAAGACTTATGAAGGATAATGCCAAGAGTTTGGACACGTCTCCAAGCGTCAAATCAAGAATCGCCAATTTCGAAGGGGGGTTGAAGAAATCAGCTCCCGGGCCTCCACCTCAAGAGCGACCTCGCCTCCAGCCCCGTTCATTCAGTCAAGGAAAACTGGACCTTTCTCAGCAACCATTAAAAGAATCGATCGCAAATCAGTCCTCGTCCATGGATTCACTTCTCGATACCAGGTCTCCTGGGAAACACGACTCAGCTTCTAAATCCCAAGACCAAGATAAATCACCGATCCAAGGCGACCAAGATCGAGCGAAACAATGGGAAGCGAGCCTGCGTAGATCGGACGAAGAATTCAGGAGACCGTCGCGGAGCACGTCCAATGCTCAAAACAGTCTCGGTTCAAGGGAACCAAGGCTCTATATTGAAACCTCGCCGTTGCGTCAGGAACGACAGCAAGCTCTGGAAAAGCCATTGAAGCAGGTGGAAATCTCCACACGAAATGAAAACAGGGTTAATTTGGCGACAGAAAGAGTTATTCCACAGAACGAAAAGCCTTCATTAAACTCAAATATTCCCGACGTAGACTTCAGTAGAAAGTCAGCAGAAGAAGAACCTCCACATCCCTCAAATGAAGACGAAAACGACGTGTTTTGGGATGCGGATGATTCTTTGCCGCCTCCGCCCCCCTTGGAACTCCTCCACCCCCTAGAAATGTCACAAGACAACTTACCCTTGCCCTCCCCTCCACGGGAAGTTCTGGTCGAGTTTCCGTCATCGACAGAGGACTATGAATCGAGACGGGATCGACTTGAACAGGAGACACTTGAGCAAAACGGTGTGAATAGTAGTGATGTGATAAAACCTGTCGGATCTTTTGCGGTAGAATCGAGCGTGGAAACTAACCACAAAACCCAAGTCGAACTAAATGGACCAGGCAAGCTGGAAACTAGTGGATTATCCAGTACTGCGCTAGACTTCTCCGGTAGCACTGATCTGTCGTCAAATGATACATCTCTTACAGAGGAGAAGAAGTATATCTCCCCCAGGGCCCCTCCACCGGCTCCACTTGTAATAACGTCTACCCCTAGCGAATTTGAGGGGTCCAACGAGAGGGGCACTTGTTTAGATGTTCCCAACAGTCCTCGCAGTGCAAGTTCCAACACGTCCACGCCATCCGGAAGCCGCCCTAACAGTATGTTGAGTCCGAAACTGGTAGAATTGGACAAAGAAAAGGCTGATCTTGTGGAAAGCATGAAGCAGAAAATAGTGGATCTGAGATCGCAAATGGACGAAATTAAAGATGAAATCGATGGCAACGAGGCACTGGGGCAGAGAGTCACTAAGGTGGTGGAAGGAAAGACGAGCGCTACCCAGTTTTCTAAGTATCAGCTTTTTACAGGCGAGCTGAACAAGATTATAGGACTGTTACTGATACTCACACAGAGAATGCACAGATATGAAATGATGCTCCATGATTTGGACATGTCTGAAGAAGCCGACAGACAACAAAGAgATGTTTTGCTCGATAAAATCGACAAAGTCACTCTGCAACACGAGGAGGCTTGTAAAATCAAGGAAGTAAACGACAAGCGCGGTGAGGTAGTGTCCAGGATTTTAGAAAATTGCCTGGAAGAAGAGGAATATGCAGATTTTCAGTACTACATAGACATGAAAACGCAGCTCGCTCTTATGCACGCGGAAATTCGGGACAAGGTCAAGATGGGAGAGGAAAGGCTGAACACTTTAAATTCGACAAAGATCGACTGGAGCATTCTTAGTTTGACGTGAGTGTCGCCAAAGTTCCACCGACTGATGTTGGCTGAAGAGTTTCCGAAGATTGACCGCCTACAAATGTCGGCCGAAAATTGACCAACCAAGGCCATCTGATGTGGTAGGAATTATCGTTGGGTTTTAAAAGGAATGGTTGCAAGAACAAGACCATTTTGCCGAGTTTCATTTAAGGGAGGTACCGTCACCAGATACATTTTGatgtagttttttcttttttcctttttggccaTAAACGAAGTCGGACCAAGCCATTggtctgaaaattaaaatattttcgaaCCTTATGGGAAAAAGTCCCGAGTAGTTTGACCAGGGACATTTTTAAGTAGTGACTAGGCACGAAAACTCGTCAGCGTGGCGAAGTTGTCATATCGTCTTACAATGATTTCGTCGCATCGGGTAGATATATTTTGGTTTTCGGTAAGCAATTTTCGTGAAAGGAATATTCTGTCTCAATAGGGCGATAAGGTACTTAGAGCTGAAAGCAGTGAGTCACAGCACCCGGGCGAACTAGTAAACAACTTATACGTGCATATGGTTTATTTGGTCGTGTAGATTTCATTAATATTCACAACTTTCGAGATAAATTtactaaaaacaaattattttcttctctgCCGAATGTAAAACCCAAAAATAACAGATAACCTTTTTTTCTCAACGGTTAATACATGCGATTGAGTATTTTTTCTCACCACAAAGTTACCGAATCATCAGTCGTAGaccaaagcaaaaaatattaaaatttgtaTCATACCATAGGGTTACTTAGAAGCATAGAATTTCTTCATTGGGAAAATCTCTGTTTCATGTTCTAATTTGCCGAAATATGGCAGCGAATTCTTTAAAATGTGTAACTCAGATGGTGTTATTTCAAAGTAAGCCGCCAATTTGTTCAGTCTTTTCGTGCTGGGTGTGTTGAAAATACAGACTATAATTTTAGGCATCGTGAAGTTGGTATTTGCCCATTGTAGTAACACAAGTTCAACTCTCTCACCCCCAAAAGTGACGAAGACTTATTTTTTCCTTACTATTCGGTACAAATTTAAGCAGGAAAAGGACGAAAATAGAGGAGATGTAAACTAGATTATTTGatcgaacaccaaattctcagtaCTTAAATCAAGGAAGTGCACGGcagatggtaaggagaattgctacgTTCATCTAAGGAGTGAGAGGGTGATGTTAACATGCGGTTTTTGCGAAACCGCAGTAGGTCAGCTgggcaaagtttaaataaattacgATTGAAGGAGTTGTTCTCTATCCAATAAATGCATTTCACTATATTTGATATGAAGCAGTCGGATATTTGGAtcgcttttttttcattagttttgtaTCTCGTGTctccttttaaaacaaaaagagtaTGAAACCCTagcaaacaaaagaagctatggtaataataatttataactGATTGAAAAAATTTGTGCGTTTCGGCCAGAAGCTTTATTTACTACGTTATCGTGCACTGGGGTTTGTACAAAACAACAAAGCGGATTCATCTATTATATGTagttgtgtatttttttgtccacgatttgttttcttcataccCTCTTAGCTTAAACTTAAATTGCAAACATTCTCTTAGAATTGTGACATTAACAGCAAGTTTGTAATGAAAACTGTCTCGATTAAAACGTGTCGTGATTTTTAATTTCTCGACAACTGCATTGATAGGGCGAATGCGTGGGGTGAGCATGTCCTATAGGGCTTTACTGAATCCGCTGTCCTCTGAGTTTGTtgtataaataattatttctcaaatgaaaaaaagtctGAGGAAGGGTTTCTTTCACTGGGAGAATTTTGGAACAGATTATCGTTAAAGGGAGAACGTTGGAAATGCAATTTTGTGGTCATagtttgtaatattttcttcCTCTGGTTGTCACTGAAACAAGCTGCATTGCAAAAACACGTGAAGAAGGAGGTTTCTTCAACGTGTAGGAGATATTCTAGATGAAATAAATGGTTAGCTTATTTATCGTT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08687 all species →	ASD2	Apx/Shroom domain ASD2	Family	Interproscan
PF00595 all species →	PDZ	PDZ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014799 all species →	Domain	Apx/Shrm Domain 2	Interproscan
IPR001478 all species →	Domain	PDZ domain	Interproscan
IPR036034 all species →	Homologous_superfamily	PDZ superfamily	Interproscan
IPR027685 all species →	Family	Shroom family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15012 all species →	APICAL PROTEIN/SHROOM-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005912 all species →	Cellular Component	adherens junction	Interproscan
GO:0007015 all species →	Biological Process	actin filament organization	Interproscan
GO:0016324 all species →	Cellular Component	apical plasma membrane	Interproscan
GO:0030864 all species →	Cellular Component	cortical actin cytoskeleton	Interproscan
GO:0043296 all species →	Cellular Component	apical junction complex	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18625	SHROOM; protein Shroom	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.