Gene detail

Detailed information of PFX31485.1 in Stylophora pistillata

Genomic Location: Spis.scaffold35:713220...718899
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Aoc1

ATGGCTAGAACTCACAAACGTGTTGAAGATAACACACGGCTGAAAGTTCAGCCAGCACGCTCCTCAGGTCTATTCAACGACTTGACCAAGGATGAGATCATCGCTGTTCGTGACTACATCCTCGGCCAGCCGTCCTTGAACATTACACCTTATGAAGAAGCGGCCATAAACAACAACTTCATTTATTTGATTGAGCTGCAACAACCACCTAAAGATGAAGCGCTTGCATTCCTCGATAGCGACAACGACGCCTTGAAACCCGAGCGTAAAGCTCGTGTCGTTATTTTCAATGGAGGAAAAGTTAACCCGAACGTGACAGAATATCTCGTGAGTCCAGCAGCAAAACCGACCAAATTTGAAGAAACAACCGGCCCCGGTCATAAATATCCGATCCCATTTGATTCTCGCCCACCAGGTGGTAAGGATGGTGACTTCATAGAAGGCATTATCTTGAACGTAACTGATCAAGCCTTTGACCTGCTGAAGGAAAGCTTCGACGGGTACACATACAGTGGTTGTACAGACCGCTGTTTAGTATGGTCCGAGTCGGCACCCGGAGAGTCTGGCCACCGTAAGAAATGGATCTGGTTTGTTCGGAAACTACAGGGAAACTACGTGCATCCGGTTGGCTTTGAGATCTATCTTAACACACAAGGAAACGATGTTTCCGAGTGGAAAGTTGAAAAAGTGTTTTACTATAATCAGTCATTCGACAGTGTGGAAGAACTGATGCAAGTTTACAAGAATGGCTCCCTTCACAAAGTTTTCCTCCCCGCTCCATCTTCCTCGAGTAAAACGCCTTTGTATTCGTCTTATTTTCAGCGAGGAAGACCACAGCCCTCAGTACCTCTGAGACCACCCCAATTGGTGGAGCCCGATGGTAAGCGTTACACCGTCAGCGGAAGTCATGTGGAATACATGAAGTGGAGTTTTGATTTCCGTTCCCGCAGTTCCACCGGGATGCAGCTGTTTGATATCAAATTCGATGGCGAAAGAATCGTGTATGAACTCAGTCTCCAGGAGGCTGCAGCATTTTACTCAGGCTGGAGTCCCATGCAGATGCTGACCGAATATCTGGATACCGCCTGGGGTATGGGTAGCAGCAAGTTTGAACTAGTCCCAGGTATCGACTGCCCAAGCACGGCCACATTCTTCGACACAATTCATTTTGTAAGCAGCAGTGAGCCAGCTACTTTCCGAAAATCAGTGTGTTTATTTGAGCTCGACCTTGGTCTTCCGTTACGCAGACATTTTGACAACGATTTTGGGGGTGGTTACAATTTCTACGGAGGAATGCCAGGAATTGCATTAGTTTTGCGCTCTGTTTCCACTGCGTACAACTACGATTACATTTATGATTACATGTTCTACCCAAACGGTGTCGTGGAGGTCAGAGTGTCGACGAGTGGCTACGTGCAAGCTACTTATTGGACAGTAAACGAGGCTCCATACGGAACCGAGATCCATACTGACGTTGCGGGAACTATTCATGATCATTTGATCAATTACAAAGTGGACATGGACATTGGAGGAAGAGAAAACTCTTTTGAGAATATCGAAATCAAGGTGGAAAATATCACCAACCCTTGGTTTCCAGGCTCCAGAAGAATACAAAAGGTGCTCAGCCGCAGCCTAAAGCAGACCGAGCAAGAAGCCACCTATCGCCAAAACTTCGAACATCCTAAGTACTTAAACTTTTTCAGCGATGGAAAAGTGAATAAGATGGGCGTCAATCGAGGTTACCGTATTCACATCCGAGACATGATGAAACAAATGTACCCTAATGACTGGGAGCTAATGTCAGGTGCCGCCTGGACACAGAACCAGATGACGATCACTAAACGCAAAGAAGAGGAAGAAAGAAGTTCCTCCATTTACAATCAGAACAGCATGCACGACCCCGTTGTGGACTTCTCAAAATTCACAGACGACGACGAAAGTATAGTGAATGAAGACCTGGTTGCCTGGGTAACAGTAGGCGTGATGCACATACCCCATTCGGAAGATATTCCGAACACTGCCACTGCGGCCAACTCGGCCAGCTTTTTCTTGCGACCCTACAACTACTTTGACGAAGACCCATCCATGGCTTCTCAAGATGGAATACTCATTTTGCCTACCGAAAACGGCGCTGATGTTAACACATTTGGAACTCCAGATGGACCTTCGTGTGCTATAAAAAACAAACCTGTGAAATACACCGGTAATTACGGAGACGTTTAA

Transcript

rna-Spis3721_mrna

atGGCTAGAACTCACAAACGTGTTGAAGATAACACACGGCTGAAAGTTCAGCCAGCACGCTCCTCAGGTCTATTCAACGACTTGACCAAGGATGAGATCATCGCTGTTCGTGACTACATCCTCGGCCAGCCGTCCTTGAACATTACACCTTATGAAGAAGCGGCCATAAACAACAACTTCATTTATTTGATTGAGCTGCAACAACCACCTAAAGATGAAGCGCTTGCATTCCTCGATAGCGACAACGACGCCTTGAAACCCGAGCGTAAAGCTCGTGTCGTTATTTTCAATGGAGGAAAAGTTAACCCGAACGTGACAGAATATCTCGTGAGTCCAGCAGCAAAACCGACCAAATTTGAAGAAACAACCGGCCCCGGTCATAAATATCCGATCCCATTTGATTCTCGCCCACCAGGTGGTAAGGATGGTGACTTCATAGAAGGCATTATCTTGAACGTAACTGATCAAGCCTTTGACCTGCTGAAGGAAAGCTTCGACGGGTACACATACAGTGGTTGTACAGACCGCTGTTTAGTATGGTCCGAGTCGGCACCCGGAGAGTCTGGCCACCGTAAGAAATGGATCTGGTTTGTTCGGAAACTACAGGGAAACTACGTGCATCCGGTTGGCTTTGAGATCTATCTTAACACACAAGGAAACGATGTTTCCGAGTGGAAAGTTGAAAAAGTGTTTTACTATAATCAGTCATTCGACAGTGTGGAAGAACTGATGCAAGTTTACAAGAATGGCTCCCTTCACAAAGTTTTCCTCCCCGCTCCATCTTCCTCGAGTAAAACGCCTTTGTATTCGTCTTATTTTCAGCGAGGAAGACCACAGCCCTCAGTACCTCTGAGACCACCCCAATTGGTGGAGCCCGATGGTAAGCGTTACACCGTCAGCGGAAGTCATGTGGAATACATGAAGTGGAGTTTTGATTTCCGTTCCCGCAGTTCCACCGGGATGCAGCTGTTTGATATCAAATTCGATGGCGAAAGAATCGTGTATGAACTCAGTCTCCAGGAGGCTGCAGCATTTTACTCAGGCTGGAGTCCCATGCAGATGCTGACCGAATATCTGGATACCGCCTGGGGTATGGGTAGCAGCAAGTTTGAACTAGTCCCAGGTATCGACTGCCCAAGCACGGCCACATTCTTCGACACAATTCATTTTGTAAGCAGCAGTGAGCCAGCTACTTTCCGAAAATCAGTGTGTTTATTTGAGCTCGACCTTGGTCTTCCGTTACGCAGACATTTTGACAACGATTTTGGGGGTGGTTACAATTTCTACGGAGGAATGCCAGGAATTGCATTAGTTTTGCGCTCTGTTTCCACTGCGTACAACTACGATTACATTTATGATTACATGTTCTACCCAAACGGTGTCGTGGAGGTCAGAGTGTCGACGAGTGGCTACGTGCAAGCTACTTATTGGACAGTAAACGAGGCTCCATACGGAACCGAGATCCATACTGACGTTGCGGGAACTATTCATGATCATTTGATCAATTACAAAGTGGACATGGACATTGGAGGAAGAGAAAACTCTTTTGAGAATATCGAAATCAAGGTGGAAAATATCACCAACCCTTGGTTTCCAGGCTCCAGAAGAATACAAAAGGTGCTCAGCCGCAGCCTAAAGCAGACCGAGCAAGAAGCCACCTATCGCCAAAACTTCGAACATCCTAAGTACTTAAACTTTTTCAGCGATGGAAAAGTGAATAAGATGGGCGTCAATCGAGGTTACCGTATTCACATCCGAGACATGATGAAACAAATGTACCCTAATGACTGGGAGCTAATGTCAGGTGCCGCCTGGACACAGAACCAGATGACGATCACTAAACgcaaagaagaggaagaaagaagtTCCTCCATTTACAATCAGAACAGCATGCACGACCCCGTTGTGGACTTCTCAAAATTCACAGACGACGACGAAAGTATAGTGAATGAAGACCTGGTTGCCTGGGTAACAGTAGGCGTGATGCACATACCCCATTCGGAAGATATTCCGAACACTGCCACTGCGGCCAACTCGGCCAGCTTTTTCTTGCGACCCTACAACTACTTTGACGAAGACCCATCCATGGCTTCTCAAGATGGAATACTCATTTTGCCTACCGAAAACGGCGCTGATGTTAACACATTTGGAACTCCAGATGGACCTTCGTGTGCTATAAAAAACAAACCTGTGAAATACACCGGTAATTACGGAGACGTTTAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01179 all species →	Cu_amine_oxid	Copper amine oxidase, enzyme domain	Domain	Interproscan
PF02727 all species →	Cu_amine_oxidN2	Copper amine oxidase, N2 domain	Domain	Interproscan
PF09248 all species →	DUF1965	Domain of unknown function (DUF1965)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR049948 all species →	Conserved_site	Copper amine oxidase, TPQ-binding site	Interproscan
IPR015798 all species →	Domain	Copper amine oxidase, catalytic domain	Interproscan
IPR049947 all species →	Conserved_site	Copper amine oxidase, copper-binding site	Interproscan
IPR015800 all species →	Domain	Copper amine oxidase, N2-terminal	Interproscan
IPR036460 all species →	Homologous_superfamily	Copper amine oxidase, catalytic domain superfamily	Interproscan
IPR015328 all species →	Domain	Domain of unknown function DUF1965	Interproscan
IPR016182 all species →	Homologous_superfamily	Copper amine oxidase, N-terminal	Interproscan
IPR000269 all species →	Family	Copper amine oxidase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10638 all species →	COPPER AMINE OXIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005507 all species →	Molecular Function	copper ion binding	Interproscan
GO:0008131 all species →	Molecular Function	primary methylamine oxidase activity	Interproscan
GO:0009308 all species →	Biological Process	amine metabolic process	Interproscan
GO:0048038 all species →	Molecular Function	quinone binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for PFX31485.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.