Gene detail

Detailed information of PFX31512.1 in Stylophora pistillata

Genomic Location: Spis.scaffold34:1032598...1047988
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-Spis3661_mrna

ATTTTCTACTAACACGGCTAATAACACGTGCGAATGAAAGATCcttaagattatttttttgagGAACATTTTGTAGTAAAATGACGGACGGAGGGAGTATGGAAGGTTCTGCTGAGGAGGAGATGAAActttatgatgatgatgaaggaGGCGGTGAGGACAGTGATTATGCTATCGACATTGAAGATGATGAGGAATTGGAAGAATCCATGTCATCAGTGAATGgaaaaaagaaaaaatccaaatcAAAGAGCGAGGAAACAGGAGAAAAGACAAAGGTGTTTCTTCCTGGGGATAAGATGGAAGATGGAGATGAATTGACTTATGACAGTTCTGCCTATGAAATGTATCATGCTGCTCAAACAAATGCCCCTTGTCTAAGTTTTGACGTAGTACCAGATAGCCTTGGAGACTCCAGAACAGAGTTTCCAATGACAGCATACATTGTGGCTGGAAGCCAGGCACCACcaggaaaacaaaatcaagttATAGTCATGAAGATGTCACAGTTGGACAAAACGTCCCCAAGTGATGATGAAAGTGATTCAGACGATGAGCTTTTGGAGGAGGAACCAGATTTAGACACAGCAATGTTTAACCATACTGGTGGAGTTAATAGAATAAGACATTCATCAATTCCTAAACGACACATTGCAGCGACTTGGTCTGAGAGGGGCAAGGTTCATATTTGGGATATATCACACCAAGTTATTTCAGTTGATAATCCGTCGACATCTGCCGAGGCATCTCACACAAAAGATATCAAGGCTTTGTTTACATTTGATGGTCATCAGGTCGAAGGATTCGCTATGGACTGGTCCAAAACAGTACCTGGAAGATTAGCAACAGGAGACTGTAAGAAGAATATCCATCTTTGGTCACCTAGGGAGGGCGGTACATGGCATGTTGACCAGAGACCTTACAGTGCACATACAGACTCTGTTGAGGACATACAGTGGAGTCCCAATGAACAAAATGTGTTTGCCTCATGCTCAGTGGACAAAACGATACGAATATGGGACGCAAGAGCGAAACCCACCAAAGCCTGTATGCTGACCACACAGGCGCATGACGCTGATGTGAATGTAATTTCTTGGAACAGaaacgAACCATTTATCGCTTCGGGAGGTGATGACGGGGTTTTAAAAGTTTGGGATCTCCGACAGTTTCAGAGCGGTGTATCGGTAGCCATGTTCAAGCATCACACAGGTGCTATCACCTCAGTGGAATGGCATCCTACAGACAGTTCAGTGTTTGTAGCCTCTGGCTCTGATGATCAGATCACGTTGTGGGACTTAGCTGTGGAAAGAGACAGCGAGGGTGAGGGAAAAGGAAGGCATTTAGATGTTCCGCCGCAATTACTGTTCATTCATATGGGCCAAAAGGATATTAAAGAGGTTCATTGGCATCCTCAGCTTCCAGGTGTGTTAATAAGCACGGCTGAGAGTGGCTTCAATATCTTCAAGACCATAAGTGTCTAGCATAGCCTCGATCTCGCGTCCTTAGCTGTACTTCTGTGAACGAAAGGTGCCTGTCTTAGTTTGTGAGGATTGCTGGAAACTTACTTCGTGGTCACATGAGGTATTTCGGCTGGACTTTGTCCAGGCTGAAAACAGGAGCTTCCTTCAGTATCAGTGGTAAAACTACTCCCGTCAATCGAACTAGCATTTGtaggggtttcaataacttttttcatttgcGGCGGCCGATAGTTTATGGCGATTgtggccgaaaaaaaaaaacaacaacaactacgaGCCAGCTCGCAGGTTCAGCAGACGGTGGTAGTCTTCCAGGCGGCGGTAGACCGCTGCCGACCGgatttattgaaacccctgcatCTGTGTGGAAGATGTCCTTGCCTATTTCATCAGAATTTTGAACATCAAATTCATAAGCTGTAAGCTTCGACCTCTTTTTAGACAGGCTGTCgaaatctgaaagaaattttaaagggACCTTCAGATGTTTCTTTGTTCACATGATCACAGAAACCTTCCACTGGAGACTAACGCGTCTCCAGATGGGCatccatttttttaatcatctttttaaGCATAATTGAAACTTCTTGTAGGTTTCTGGTGGTCAAGGTTTCTCGATGTAAAACATAGATAAGCCAGTCAGAGAGTTCAATCGTGCCGTGAATTGCATTTGACTCTTAACCAACTTTGAGTGCCATTTTGATGGACAAACTCTGCAATTACCGTGCACGGGCCCTCGCCAACAGTTTAGAGATGTCtataaagtttttttctcattataaTTTCTGTTCGTGTCTTATTATTAATACAAAACTGCTGTACAGAACTACTCGAATTAAAAGTATTGAAA

Protein

Gene family

Family type	Membership / link
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12265 all species →	CAF1C_H4-bd	Histone-binding protein RBBP4 or subunit C of CAF1 complex	Repeat	Interproscan
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR020472 all species →	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR022052 all species →	Domain	Histone-binding protein RBBP4, N-terminal	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR051972 all species →	Family	Glutamate-rich WD repeat-containing	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45903 all species →	GLUTAMATE-RICH WD REPEAT-CONTAINING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0042254 all species →	Biological Process	ribosome biogenesis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14848	RRB1, GRWD1; ribosome assembly protein RRB1	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.