Gene detail

Detailed information of PFX31516.1 in Stylophora pistillata

Genomic Location: Spis.scaffold34:71192...99043
NR annotation: no NCBI-NR hit recorded
Species abbreviation SPIST · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

TSTA3

ATGGTGTGTAGGGATTTACAACATGCAGAGCAACATGTTTATAAACAGTTCACCATCAAAACCAGACGCTTCTGCACCGCAAGTCACCTAGAAATTTCGATCGACACGTCAATACTCCCTCGTGAAAGCACAGTAAACTTTGTATCACTCAAAATGGCTGAACCAAAAAGAATTCTTGTGACTGGTGGCACTGGCCTTGTTGGGAAAGCTCTAGAAGAAGTTGTAGCAACAGAAGCGAAAAGATCAGATGAAACTTGGTTTTTTTTGTCTTCTAAAGATGGCGACCTTTGTGATGCTGCAGCAACCAAAGCAATATTTGACAAGTACAAGCCAACTCATGTGATTCACTTAGCAGCTCTGGTAGGCGGACTTTTTAAGAACCTCAAGTACAATCTGGATTTCTGGAGGATGAATACACTTATCAATGACAATGTTCTTTACAGCTGTCATCTAAGTAAGGTGAAAAAGTGCGTATCTTGTCTTTCAACGTGCATTTTCCCAGACAAGACAACATATCCTATTGACGAAACAATGGTTCACAATGGCCCGCCTCACTCTTCTAACTTTGGTTATGCATACTCCAAGCGTATGATTGATGTGCAAAACAGAGCATATCAGCAACAGTATCCAAGTGGATGCTCATTCACTTCTGTTGTTCCCACCAATGTTTATGGAAAGTATGATAACTTTAATCTGGAGGACTCCCATGTTTTACCTGGACTTATTCACAAAGTTTACTTGGCACAAAAAGAAGGCAAGCCCCTTGTAGTGTGGGGAACTGGTTCACCACGGAGACAGTTTATTTATTCCAAGGATCTGGCTAGGTTAATGATCTGGGTGCTGAGAGAATATGATGAAGTTGATCCTATTATTTTGTCAGTGGGAGAAGAGGATGAACTGTCAATAAAGGAGGCTGCAGAACTGGTTGTGGAAGGAATGGGTTTTGAAGGAAAAGTTGAATACGACACCAGCAAATCCGATGGCCAGTTCAAGAAGACTGCAAGCAATGCAAAACTGCGAAAATACTTGCCAGACTTCAAGTTTACCGATCCCAGGATAGCTATCAAAGACACCTGCGATTGGTTCTTGGCAAACTACGAGACATGTCGAAAATGCGGAGTAGTTCTTGTTGCAAGTGAAGTTCACTCATCGAACGTTTACAATGAGGACAATCCTGACTTCAAAAGTCAACAATCATTCCAAGACCGTCTATTAAATGACCTTATCAAGGCAGGCAAACCTAAAAAATTACCGGAAAAAAGTGACAGCAAGTTTATTCCAGAGAATCACATCAATGTATCTAACGATGGATTTAGAGTGGGAAACATACATATCACTGGTCTTGGGTCAAAACCTCGCTTGAGCAGTCTTTGCACGAGAAAAGGTATCGCAATAGGAGAATTGGAATCAGAGGTAGGAGAGGCTGGCGATGGCTGCGCAGAAAACCAATATAAGAATCAAACTGGACAGATCTCTTTCCGGCTTGGAAGACGACGATTGTACATAAGAAGTCGACCTCAGTTCAAGATTAACAACCGATGGCGTCCTGCAAGACGACACAGAGGCAAAATGAGTGTACGTGTTGGATTACGATACCGGCCAGTCAAGGTGAAGCGCGGAAGAGCCGTTTATAGAGGAAACAGTAGATGGAGAAGAATCAGGAGTCCAAAGATCAGAGGAGGAGCAGTGATGCGGATTAGATGCGGAGGAAGAATGAGAAAGATTTACAAGCGGGGAGGAAGACTGGTGTTGACTCGTAAAGGTCGATTACGAACAGTGAGATACGAAAATCCAACAGGACGAGTGTCTTACCGGCTCAGAAACCGACGACGCTACATCACAGGTCGACCTCAGTTCTTGATCAACAACCGATGGCGGCGTGTAACACGACACAGAGGCAAGAACACGACGGTTGAAGCGTTACCGACGACGAGAGCGGCGACAGGATCGACGTATAAGACGGAAGAGAAGGCGAATCAGCCCACTGAAGATTCATTATCGCAGAAAGACGAGAAAGATCTACAAATGGAGGGATTCCGAGGGAAATCAGTATTCTATCGCTCTAAAAGAGCAAGGAAATGGCGCCGTGTCAGGAACGCGTCACGGAACGTTAAGATTCGCGTGAAAGGAAGTTACAAACGAGTAAGGCCGTTTGGTAACAGACTTGGTGTTCGTTACCGCGGAAGGACCAGACCAATTCGAGTTGATCACGGAAAAGTAAGATTCTACAAAGATCTAAGATGGAGACGCACTTCGACTTCCCATGGTCGTCGGTCAAGAAAACGGAGAGAAGAGAAAGGGCTGATGAAGCGCTGGGCAAGGTTCGTGCGACGTAGAATAAAACAGCGACGCCGTTATGGGTTACGTAATGGAAGAGTCTTGTTCAAGTATGGCGGGAAATTTAGAAAGGTCCTGAGGAAGACTGGGCGACTACGATTCCATGTTGGTCATAAAGTCTTTGGTCTGAGAATTAGAAGAGGAAGAGTGAGTATACACTCTGGTAATAAGCCATGGCGGCCGGTTAAACGTGTCATTCGCCGCCTAAAGGTGGTTATCGGAAGAAAACTTCGCTGGATGTACCCAAAAAGAGGACTCCTGAAAGTTTATTTAAGAGGCAAAGGAAGACCAATCAGTTTTCACCGCGGACGTCCAAGGATCAAATTAGGGAATAAGTGGGTAGGCCAAAATCGAAAAAGGAAATATCCTAAGATGCGACTCAGATATAGAGGAAGGTACAGGAAAGTTCAGAGAAGACAAGGTTGCTGGAATATTCGATACCGAGGCAGATTCCGACGAGTCATATTGAGAGGAAAACAGTTTGGAGTCCGTGTAAGGGGACGATGGAGATATGTGCCTTCTAGAAGAGGAGCTTTGAAGATACGTCACAGGGGAAAGTGGCGACCTGTGCGAAATTGCTGTGACAAACTCAAGGCTGTGTTTAACGGTCGTCTTCGACAAGTACGCCTGCGCAACGGGAAGGTGAAGATACGAGGACGACTGGGTTGGAAAAAATTACGACGGGGTAGTCGCGGACCATTTGGTTTGAAAATGAGAGACAAAACCGTTAAACAAGATACCAAGAAGCAATCTTTGAGCTCAGAGGACAAGTACCTCATAGATCCCAGCCCAGTAACAAAAACTTCTGAGAAGGCGCAAGTGTACGATTTACCACCTACTACTGCTGACCAGCAAGAACCCGCCTCATCAGAGGCCGAGAAATCAAGCTTTGGAAGCAGTAATGACAAAACCGTTGAACAAGATACCAAGAAGCTATCTTTGAGCTCAGAGAAGAATTACTTCATAGATCCCAGCCCACTAACTGAAACTTCTGAGAAGGCGCAATTGTACGATTCACCACCCACTGCTGCTGACCAGCAAGAACCCGGCTCATCGGAAGCCGAGAGATCAAGCTTTGGGAGCGGCAATGGTGCGATCGTCGACGAAATGTTGCTGGAAAGTTGA

Transcript

rna-Spis3582_mrna

ATGGTGTGTAGGGATTTACAACATGCAGAGCAACATGTTTATAAACAGTTCACCATCAAAACCAGACGCTTCTGCACCGCAAGTCACCTAGAAATTTCGATCGACACGTCAATACTCCCTCGTGAAAGCACAGTAAACTTTGTATCACTCAAAATGGCTGAACCAAAAAGAATTCTTGTGACTGGTGGCACTGGCCTTGTTGGGAAAGCTCTAGAAGAAGTTGTAGCAACAGAAGCGAAAAGATCAGATGaaacttggttttttttgtcttctaaaGATGGCGACCTTTGtgATGCTGCAGCAACCAAAGCAATATTTGACAAGTACAAGCCAACTCATGTGATTCACTTAGCAGCTCTGGTAGGCGGACTTTTTAAGAACCTCAAGTACAATCTGGATTTCTGGaggatGAATACACTTATCAATGACAATGTTCTTTACAGCTGTCATCTAAGTAAGGTGAAAAAGTGCGTATCTTGTCTTTCAACGTGCATTTTCCCAGACAAGACAACATATCCTATTGACGAAACAATGGTTCACAATGGCCCGCCTCACTCTTCTAACTTTGGTTATGCATACTCCAAGCGTATGATTGATGTGCAAAACAGAGCATATCAGCAACAGTATCCAAGTGGATGCTCATTCACTTCTGTTGTTCCCACCAATGTTTATGGAAAGTATGATAACTTTAATCTGGAGGACTCCCATGTTTTACCTGGACTTATTCACAAAGTTTACTTGGCACAAAAAGAAGGCAAGCCCCTTGTAGTGTGGGGAACTGGTTCACCACGGAGACAGTTTATTTATTCCAAGGATCTGGCTAGGTTAATGATCTGGGTGCTGAGAGAATATGATGAAGTTGATCCTATTATTTTGTCAGTGGGAGAAGAGGATGAACTGTCAATAAAGGAGGCTGCAGAACTGGTTGTGGAAGGAATGGGTTTTGAAGGAAAAGTTGAATACGACACCAGCAAATCCGATGGCCAGTTCAAGAAGACTGCAAGCAATGCAAAACTGCGAAAATACTTGCCAGACTTCAAGTTTACCGATCCCAGGATAGCTATCAAAGACACCTGCGATTGGTTCTTGGCAAACTACGAGACATGTCGAAAATGCGGAGTAGTTCTTGTTGCAAGTGAAGTTCACTCATCGAACGTTTACAATGAGGACAATCCTGACTTCAAAAGTCAACAATCATTCCAAGACCGTCTATTAAATGACCTTATCAAGGCAGGCAAACCTAAAAAATTACCGGAAAAAAGTGACAGCAAGTTTATTCCAGAGAATCACATCAATGtatCTAACGATGGATTTAGAGTGGGAAACATACATATCACTGGTCTTGGGTCAAAACCTCGCTTGAGCAGTCTTTGCACGAGAAAAGGTATCGCAATAGGAGAATTGGAATCAGAGGTAGGAGAGGCTGGCGATGGCTGCGCAGAAAACCAATATAAGAATCAAACTGGACAGATCTCTTTCCGGCTTGGAAGACGACGATTGTACATAAGAAGTCGACCTCAGTTCAAGATTAACAACCGATGGCGTCCTGCAAGACGACACAGAGGCAAAATGAGTGTACGTGTTGGATTACGATACCGGCCAGTCAAGGTGAAGCGCGGAAGAGCCGTTTATAGAGGAAACAGTAGATGGAGAAGAATCAGGAGTCCAAAGATCAGAGGAGGAGCAGTGATGCGGATTAGATGCGGAGGAAGAATGAGAAAGATTTACAAGCGGGGAGGAAGACTGGTGTTGACTCGTAAAGGTCGATTACGAACAGTGAGATACGAAAATCCAACAGGACGAGTGTCTTACCGGCTCAGAAACCGACGACGCTACATCACAGGTCGACCTCAGTTCTTGATCAACAACCGATGGCGGCGTGTAACACGACACAGAGGCAAGAACACGACGGTTGAAGCGTTACCGACGACGAGAGCGGCGACAGGATCGACGTATAAGACGGAAGAGAAGGCGAATCAGCCCACTGAAGATTCATTATCGCAGAAAGACGAGAAAGATCTACAAATGGAGGGATTCCGAGGGAAATCAGTATTCTATCGCTCTAAAAGAGCAAGGAAATGGCGCCGTGTCAGGAACGCGTCACGGAACGTTAAGATTCGCGTGAAAGGAAGTTACAAACGAGTAAGGCCGTTTGGTAACAGACTTGGTGTTCGTTACCGCGGAAGGACCAGACCAATTCGAGTTGATCACGGAAAAGTAAGATTCTACAAAGATCTAAGATGGAGACGCACTTCGACTTCCCATGGTCGTCGGTCAAGAAAACGGAGAGAAGAGAAAGGGCTGATGAAGCGCTGGGCAAGGTTCGTGCGACGTAGAATAAAACAGCGACGCCGTTATGGGTTACGTAATGGAAGAGTCTTGTTCAAGTATGGCGGGAAATTTAGAAAGGTCCTGAGGAAGACTGGGCGACTACGATTCCATGTTGGTCATAAAGTCTTTGGTCTGAGaattaGAAGAGGAAGAGTGAGTATACACTCTGGTAATAAGCCATGGCGGCCGGTTAAACGTGTCATTCGCCGCCTAAAGGTGGTTATCGGAAGAAAACTTCGCTGGATGTACCCAAAAAGAGGACTCCTGAAAGTTTATTTAAGAGGCAAAGGAAGACCAATCAGTTTTCACCGCGGACGTCCAAGGATCAAATTAGGGAATAAGTGGGTAGGCCAAAATCGAAAAAGGAAATATCCTAAGATGCGACTCAGATATAGAGGAAGGTACAGGAAAGTTCAGAGAAGACAAGGTTGCTGGAATATTCGATACCGAGGCAGATTCCGACGAGTCATATTGAGAGGAAAACAGTTTGGAGTCCGTGTAAGGGGACGATGGAGATATGTGCCTTCTAGAAGAGGAGCTTTGAAGATACGTCACAGGGGAAAGTGGCGACCTGTGCGAAATTGCTGTGACAAACTCAAGGCTGTGTTTAACGGTCGTCTTCGACAAGTACGCCTGCGCAACGGGAAGGTGAAGATACGAGGACGACTGGGTTGGAAAAAATTACGACGGGGTAGTCGCGGACCATTTGGTTTGAAAATGAGAGACAAAACCGTTAAACAAGATACCAAGAAGCAATCTTTGAGCTCAGAGGACAAGTACCTCATAGATCCCAGCCCAGTAACAAAAACTTCTGAGAAGGCGCAAGTGTACGATTTACCACCTACTACTGCTGACCAGCAAGAACCCGCCTCATCAGAGGCCGAGAAATCAAGCTTTGGAAGCAGTAATGACAAAACCGTTGAACAAGATACCAAGAAGCTATCTTTGAGCTCAGAGAAGAATTACTTCATAGATCCCAGCCCACTAACTGAAACTTCTGAGAAGGCGCAATTGTACGATTCACCACCCACTGCTGCTGACCAGCAAGAACCCGGCTCATCGGAAGCCGAGAGATCAAGCTTTGGGAGCGGCAATGGTGCGATCGTCGACGAAATGTTGCTGGAAAGTTGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01370 all species →	Epimerase	NAD dependent epimerase/dehydratase family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR028614 all species →	Family	GDP-L-fucose synthase/GDP-L-colitose synthase	Interproscan
IPR001509 all species →	Domain	NAD-dependent epimerase/dehydratase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43238 all species →	GDP-L-FUCOSE SYNTHASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0050577 all species →	Molecular Function	GDP-L-fucose synthase activity	Interproscan
GO:0009226 all species →	Biological Process	nucleotide-sugar biosynthetic process	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K21027	TRMU, SLM3; tRNA-5-taurinomethyluridine 2-sulfurtransferase	EC:2.8.1.14	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.