Gene detail

Detailed information of PFX31602.1 in Stylophora pistillata

Genomic Location: Spis.scaffold33:176004...195589
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

GlyS

ATGTGCGACCCATCGTCTTGTTTTCGTCTGATTTTTCGCTTCTTTACTTCGTTCTTTGAAAGCACAGAAAGTATCCCGTTCATTTCTTTCTTCTCAAAATTGCAAAAACAAAGAGCACTGATGCGGAGTCGAAGAGATCAGACCGATGGTGACATGGAAACTATTCGATCGGGTATACAATCCTTGGAGCCAGCGGGGATACCTGAGAGCAAGTTCGAGGTTGGTTGTGAGCGAACTATGGAGAGGACGTTAAGTGGGGCTTCAGACATCTTAGTGCGCCCTTGGGATGGAGTTCCGAATCAGGAGCCACACTATTTTACCTTTGAAGTTTCGTGGGAAGTTGCTAACAAAGTTGGTGGGATCTATACTGTGATCAGATCTAAAGCACCGGCTGCAGTTGATGTACTAGGAAACAAGTATTGCTTGATAGGAATTTACAATGATCTGCAATGCAAGACTGAAGTTGAAATGATGGAACCTGAAGATCCTGCAATGAAAGGAGCTGTCCAAGCCATGAGAGACAGTGGTGTAGAGACTCACTTTGGGAGATGGTTGATTGATGGATATCCCAAGGTGGTTCTTTTTAACATTGGCTCAATTTACCACAAGCTGGGTCAAATGAAGAATGACTTTTGGAAGAAAACTCACATTGGTATCCCTGAGCCTGACACAGAGTGTAATGATGCTGTCGTGTTGGGATTCTTGGTTGCACAGTTTATTGGAGAGTTTCGCGCCAGATGTGAACCAGACCTACCTATAGCTGCACATTTCCATGAATGGCAGGCAGGGGTGGGACTTGTTCTCCTGCGAATGACAAATGTGGCTGTAGCAACAATTTTCACAACACATGCAACACTGTTGGGCCGATATCTTTGTGCAGCCAATGTGGACTTTTATAATAATTTGGATAGGTTTGATGTTGACAAGGAAGCTGGAGATCGTAAGATTTATCATCGTTACTGCCTTGAGCGAGCCGCTGCAAACAATGCCCATGTATTCACTACTGTATCACACATCACAGCAGATGAAGCAGAGCATTTACTGAAAAGAAGAGCTGAAATTGTCCTACCAAATGGTTTAAATGTTGTCAAATACACAGCTCTACATGAGTTCCAGAATCTTCATGCCATTTCCAAAGAGAAGATTTGTAACTTTGTGCGAGGTCATTTTCATGGACATCTAGATTTTGATATGGACAAGACACTGTTCTTCTTCAGTGCTGGAAGGTATGAGTACTTCAACAAGGGAGCTGACCTGTATATTGAAGCATTAGCAAGGCTTAACCACCTGTTGAAGTCCAGTGGCAGTGATGTTACCGTAGTCGCATTTCTGATATTTCCAGCACGGACCAGCAACTTCAATGTTGATTCACTGAAAGGACAAGCTGTCACCAAACAGCTCAGTGATACAGTCTCTGAAATCCAGGATAAAATCGGAAAACGAATATACGAGTCTTGTCTTGGGGGAAAGCTTCCGGATGGCAATAAGCTTTTAGAGGCAGATGAGATCATCAAGCTGAAGAGATGTATCCTTGGCGCTAAGCGTCCAAACCTTCCTGCCATTGTGACTCACAATATGTTAGAAGACTCTGTGGACCCCATTCTGTGTCACCTTCGCAGGACGCATCTTTTCAACAAGCCTGAGGACAGAGTCAAGGTTATTTTTCATCCTGAATTCTTATCCACGATTAGTCCTCTTCTTCCCATTGACTACAGCGAGTTTGTGCGAGGCTGTCATTTGGGAGTGTTTCCTTCTTATTATGAGCCTTGGGGCTACACTCCAGCGGAGTGTACTGTGATGGGAATCCCCTCCGTGTCCACCAATCTATCAGGATTTGGTCGGTTCATGGCAGAGCACGTGACTGATCCTACATCCTATGGCATTTATCTTGTGGACAGGAGATTCAAGTCAGCTGAAGAATCAATTGTCGAACTCACGCAGTACATGATGAGTTTTTGCAAACTGACAAGAAGACAGCGAATCATTCAGAGGAACAGGACAGAACGTCTTAGTGAACTCTTGGATTGGAGGAGTTTGCACCGGTATTACACCCGTGCACGGTTACTTGCCTTGCATCATCTTCAACCGGACAAATACGAGAAGCCGAGCATGACCGAGGAAGCGCAATCGAATTTCATTTATCCACGCCCAAGCTCAGAACCACCATCTCCGGTCCCCTCCGAATGTGGCTCGGACACTGGCGAAGATGAAGAAGACACAAAGCATCGACTCTTTAGTGATTAG

Transcript

rna-Spis3506_mrna

GGAACGCGAAGGCAACATCGCCTTCTGTTTGATTGTGTTTAAAAGATATATGGACTTTTTCGTGGTTGCTCTGTGAATACATGGAATGTGCGACCCATCGTCTTGTTTTCGTCTGATTTTTCGCTTCTTTACTTCGTTCTTTGAAAGCACAGAAAGTATCCcgttcatttctttcttctcaaaattgcaaaaacaaagagCACTGATGCGGAGTCGAAGAGATCAGACCGATGGTGACATGGAAACTATTCGATCGGGTATACAATCCTTGGAGCCAGCGGGGATACCTGAGAGCAAGTTCGAGGTTGGTTGTGAGCGAACTATGGAGAGGACGTTAAGTGGGGCTTCAGACATCTTAGTGCGCCCTTGGGATGGAGTTCCGAATCAGGAGCCACACTATTTTACCTTTGAAGTTTCGTGGGAAGTTGCTAACAAAGTTGGTGGGATCTATACTGTGATCAGATCTAAAGCACCGGCTGCAGTTGATGTACTAGGAAACAAGTATTGCTTGATAGGAATTTACAATGATCTGCAATGCAAGACTGAAGTTGAAATGATGGAACCTGAAGATCCTGCAATGAAAGGAGCTGTCCAAGCCATGAGAGACAGTGGTGTAGAGACTCACTTTGGGAGATGGTTGATTGATGGATATCCCAAGGTGGTTCTTTTTAACATTGGCTCAATTTACCACAAGCTGGGTCAAATGAAGAATGACTTTTGGAAGAAAACTCACATTGGTATCCCTGAGCCTGACACAGAGTGTAATGATGCTGTCGTGTTGGGATTCTTGGTTGCACAGTTTATTGGAGAGtttcgcGCCAGATGTGAACCAGACCTACCTATAGCTGCACATTTCCATGAATGGCAGGCAGGGGTGGGACTTGTTCTCCTGCGAATGACAAATGTGGCTGTAGCAACAATTTTCACAACACATGCAACACTGTTGGGCCGATATCTTTGTGCAGCCAATGTGGACttttataataatttggatagGTTTGATGTTGACAAGGAAGCTGGAGATCGTAAGATTTATCATCGTTACTGCCTTGAGCGAGCCGCTGCAAACAATGCCCATGTATTCACTACTGTATCACACATCACAGCAGATGAAGCAGAGCATTTACTGAAAAGAAGAGCTGAAATTGTCCTACCAAATGGTTTAAATGTTGTCAAATACACAGCTCTACATGAGTTCCAGAATCTTCATGCCATTTCCAAAGAGAAGATTTGTAACTTTGTGCGAGGTCATTTTCATGGACATCTAGATTTTGATATGGACAAGACACTGTTCTTCTTCAGTGCTGGAAGGTATGAGTACTTCAACAAGGGAGCTGACCTGTATATTGAAGCATTAGCAAGGCTTAACCACCTGTTGAAGtCCAGTGGCAGTGATGTTACCGTAGTCGCATTTCTGATATTTCCAGCACGGACCAGCAACTTCAATGTTGATTCACTGAAAGGACAAGCTGTCACCAAACAGCTCAGTGATACAGTCTCTGAAATCCAGGATAAAATCGGAAAACGAATATACGAGTCTTGTCTTGGGGGAAAGCTTCCGGATGGCAATAAGCTTTTAGAGGCAGATGAGATCATCAAGCTGAAGAGATGTATCCTTGGCGCTAAGCGTCCAAACCTTCCTGCCATTGTGACTCACAATATGTTAGAAGACTCTGTGGACCCCATTCTGTGTCACCTTCGCAGGACGCATCTTTTCAACAAGCCTGAGGACAGAGTCAAGGTTATTTTTCATCCTGAATTCTTATCCACGATTAGTCCTCTTCTTCCCATTGACTACAGCGAGTTTGTGCGAGGCTGTCATTTGGGAGTGTTTCCTTCTTATTATGAGCCTTGGGGCTACACTCCAGCGGAGTGTACTGTGATGGGAATCCCCTCCGTGTCCACCAATCTATCAGGATTTGGTCGGTTCATGGCAGAGCACGTGACTGATCCTACATCCTATGGCATTTATCTTGTGGACAGGAGATTCAAGTCAGCTGAAGAATCAATTGTCGAACTCACGCAGTACATGATGAGTTTTTGCAAACTGACAAGAAGACAGCGAATCATTCAGAGGAACAGGACAGAACGTCTTAGTGAACTCTTGGATTGGAGGAGTTTGCACCGGTATTACACCCGTGCACGGTTACTTGCCTTGCATCATCTTCAACCGGACAAATACGAGAAGCCGAGCATGACCGAGGAAGCGCAATCGAATTTCATTTATCCACGCCCAAGCTCAGAACCACCATCTCCGGTCCCCTCCGAATGTGGCTCGGACACTGGCGAAGATGAAGAAGACACAAAGCATCGACTCTTTAGTGATTAGACTGTTTTACCACGGGAATGATTTTTAGTTTAAATAAGCAACGTGTTCTTTAGATACAAGAATTTTCTTATCAAGTATTCCTTCAATGACTTAAAatccaaacaaaatttaaaaacaaggcATCTGTTACGCTTAAGTCATATCAGTTGCCTGGCTTAATCCTCGTCCTTGTGACTTCAGTCGATGTTTTTGTAACGTATTCTTTCGACGATGAGTCACGCTCTCTCTTCGAAATCGGCGTGACCAAAATTACCTGCTATTTGGGGAAAGAGTTGAGCCGAGTACCGAGCCAACTTTTCCCCATTTCACTCTGTTATTTAAGTAACGCTTATCTTTGAGATGCGGGATTTGACGAAGATTATGTTGCATTTATAGAGTGTTTTAAGTTATGTTTTATGGACTGAAAACCGAATTGATGCCAGTTAAGCCACAATTCATTTAGGGAACATATTTAAGAACCGGAGGGGATGGCGACAGTGGGTGTTCTTTCGAAGTGAAAATTCGTGGAAACAGCAATAGAATTTACGACTAGAATTCAATTAACATCGCTTTTACACGCACgcaca

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005905 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05693 all species →	Glycogen_syn	Glycogen synthase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008631 all species →	Family	Glycogen synthase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10176 all species →	GLYCOGEN SYNTHASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004373 all species →	Molecular Function	alpha-1,4-glucan glucosyltransferase (UDP-glucose donor) activity	Interproscan
GO:0005978 all species →	Biological Process	glycogen biosynthetic process	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00693	GYS; glycogen synthase	EC:2.4.1.11	Glycosyltransferases	ko01003	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.