Gene detail

Detailed information of PFX31774.1 in Stylophora pistillata

Genomic Location: Spis.scaffold31:42428...55754
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

nol6

ATGAAACGTAGAGTGCAGGCTACAGAAAACTCTTTAGCAGTTAATAATTTATCTAAAAAGAAAGCTGTATTTGAAAATGGAGAAGAAAATAATTCCAAAACAACAAATTACAAAGACAGTCTGTACCGACCACCCACTAGCGAGGAAATCACTGCCCTCAAGGAAACTGAAAATCTTTTCAAGTCCAGTCTCTTCCGTATGCAGATAACTGAACTTCTTGCTGAAGTGCAACCAAAGAAAGAGAGGAATAAAGCTCTTGATGAAGTCCTACATGAACTGAATACTCTTTTACTGTCATTACCTGATGAAGAGACAATACACGAGATTGAAGATCACTCATGGCTTCCCAAAGAAGTCAAATTTCCTCTTCCACCCAGTCTTTCACCTGTGAAAGGAAAGTTCTGCTTTAGAAGACCAGTGAGTGTGAAAGTTGTGGGGAGTTACCTTCTTGGTACAGTAACAAAACCAAACTTGAATGTGGATGTAGCTGTTGAAATGCCAAAGGAGTGCTTTCAACATAAGGACCACCTAAATCTCCGATATCAACACAAGCGAGCTTTTTACCTGTCCATCATTGCATCACATTTAACGAACACCTCTCTATTTGAGAGTGTCCAGTTCAGTTATATGAGTGGAGAGGTATTAAGGCCAATCCTTGTGCTTAAACCAGAAGGCAAAGCTGGCAAACAGTTTGTCATCAGATTGCATCCCTCTTTATCAGAAGGCACTTTCAAACCTCAGAGGCTTTCTCCAATCAGGAACAATGTTAAACGGCGTTGGTTCACAGGAGAGGAGGGTATGGCTGATGACATGGATGACACAGGGCTGCCAACCCCTCATTACAACGCATCAGTATTGTCAGACATGTTCCTGGAACATCACCTTCACCACTTGTACAAATGCATCACGGATTTTCCAGGAATGAAAGATGCTGTGGCTCTCATCAAAGTTTGGTTGCATCAGCGGGAACTTGATAAGGGCCAGGGTTGCTGCAGCGGATTTTTAGTGTCTATGTTCATCTCTCATTTACTACTTATCAAGAAAATCAACAAGCAGATGAGTTCATATCAGATCCTTAGAGTTTTCCTACAGTTCCTTGTGTCAAATGATTTGACAAAAGAAGGAATAACAATGACCAGGGAAGACAGTGATGACAGTAATGTGCCATCAAAGGCAGATTTTCATGCAGGGTTTGATGTGGTGTTTGTGGACCCATCTGGTTACCTAAACCTTTGTGCAGGAATGACTAGGGCACAGTACAATAGATTACAGTCTGAAGCCAGGTTATCTTTGGAATATTTGGATAACAGTTTTATGGATGGCTTTGAAGTTCTTTTTATGAAGTCTGTGCCATTTATTCAAACATTTGATCAATATCTGCAAATTCCAAATATTAGTTCTTTGGAGGTGGTTTGTAAGAAGGATGACCTTCTTGGTCACCTTATCGACCATCCTGGAGATTGGACTCCAGTTGTTACTGATTGGCTACTTCATCTTGTTGATAAGGGTCTGGGAAAGAGAGTAGACATGCTGTGCTTTGAGCCACAGGCACCTTGTCAGTGGCCAGTTGGCAAGACTCCACCCGACAGAGGTCAGAAGGCTTTGACTCTGGGTTTGCTGTTGAACTCTGATCATTCTGATGTCGTACTTGACACGGGACCCCCAGCCGACAGCGCAGAGGCGACATCTTTTCGATCATTTTGGGGCGAGAAGTCTGAGTTGCGTCGATTTAAAGATGGATCCATCCTGGAGGCGGTGTTATGGCCGTGCAACAGTTTAGCAGAAAAACGAACTATATGTGAAAAAATTATCAAACACCTTATTCAAAGGCACGGAGATGTCGACACTTCGTCGTTCACGTACGTTGCGAGTCAGTTGGACTGCGTACTGCAGACTCGTGCTGAATCTGCTAACAGTGGAACAGGCGAGGAGGATGCAGAGAGAGTGAATCAAGTTTATAACACCTTGTGTAAACAGATCCGAGCGTTGGAGCTGCCACTTAGTGTGAGCTCGTTGCAGGGAATAAGCCCGGTGTTTAGGGGAGCAGAGGTTTTTCCACCAAGAGCTTGCTTTAAAAATAGCAAAGTCAAACCGCAACCTGGCAAGGAAAACCTGGCAGACAATGTTTCACTGCCGTCTGAACTAAAGAACACCTCTTGGTGTCCAGCTATGGAAGTTGTCTTGCAGTTTGAAACGAGTGGAAAATGGCCGGATGACTTGACCGCCATTCAACACATCAAAGCGGCATTCCACATAAGACTTGCCGAGTTACTGAAGAGCAAATGTTCACTCGTTACTGCCGCTTCACGTCATCATTTAGACGTACTGAAGGATGGTTTTGTGTTCAGAGTAAAGATCATGCACTACCGTGAAATGGTGTTGCTCCAAAAAAGCGATATCTCTCAGGAGTCAAAAACAGATCACGAGAAGAAAGCTAAAGAACTAGAACGTGAATTAACACATCTACCATTATTGACAAGTACTCTTCATGGGATACAACAGCAGTTTAGTGGATATAGTGGAACTGTACGTTTGGCAAAACGCTGGATGTCGGCTCAACTGTTGTGTGATCATATGACTGAAGAGTGTATCGAGCTATTGGTTGCCTCTCTGTTCCTCTCCCCAGCCCCCTTCGCTCCTCCCAGATCTCCCTTCATTGGATTTCTTCGATTTCTTCATCTGCTGTCTTCGACCGATTGGCAAACAACGCCGATAGTTCTAAATTTCAATAATGACATTTCTGCTGAAGAATACCAGGAAATAACTTCCAAGTTTTCAAATAACAGAGCGCGGCTTCCAGCGATATTTATTTCTACTCCTAGAGACAAATTTACTTCTTTGTGGACAAAGGACAAACCCTCCAAACAGATTGTTAATAGACTTTCCTTGCTGGCGAGAGAGTCGCACTCAGTCTTGGAACATCAAATTAAAACGTGTGCTCTTCAAACAACAGATTTCAAGTTAATCTTCCGTCCGCCATTGGATCATTATGACGTCATCATCCATCTTCACCATCGTCTCCTCCCTCGAAGAACCCAGGCCTTGGATCGTGTGAAACATTCAACAGAGGACACCTCGATATCAAGTCCACCTGTTTTACTTCCGGTCGTCAACTTTGACCCTACGCGCTTGTATCTCGAAGAACTCAAGGAGGCGTTTTCCGAAGTCGCGGTGTTCTTTCACGATGTTTATGGAGGGGACATTATTGGAGTTTTGTGGAAACCCTACAGCTTTGTACCAGCTCAGTTTAAGGTTCTACACGTGCAGTACAAGATGCCATTAACCATTCCTCAAAAGAGTGCAAAGTCCAAGCAAGTCCCAAGCTGGGTCATACCGAGTATATCAGCCATCTTGTCTGACTTTCAAACAATCGGAGACGGATTGGTGAAGAAAATCGAGGTGATGAATGCTTGA

Transcript

rna-Spis3332_mrna

TGGCGAACTGAGCAAAGAAAGATTTTCGAAGGTGTATTTTGTTTTGCGAAATCTTATCGCGAAACATTATATCCACCATAATGAAACGTAGAGTGCAGGCTACAGAAAACTCTTTAGCAGTTAATAATTTATCTAAAAAGAAAGCTGTATTTGAAAATGGAGAAGAAAATAAttccaaaacaacaaattacaAAGACAGTCTGTACCGACCACCCACTAGCGAGGAAATCACTGCCCTCAAGGAAACTGAAAATCTTTTCAAGTCCAGTCTCTTCCGTATGCAGataaCTGAACTTCTTGCTGAAGTGCAACCAAAGAAAGAGAGGAATAAAGCTCTTGATGAAGTCCTACATGAACTGAATACTCTTTTACTGTCATTACCTGATGAAGAGACAATACACGAGATTGAAGATCACTCATGGCTTCCCAAAGAAGTCAAATTTCCTCTTCCACCCAGTCTTTCACCTGTGAAAGGAAAGTTCTGCTTTAGAAGACCAGTGAGTGTGAAAGTTGTGGGGAGTTACCTTCTTGGTACAGTAACAAAACCAAACTTGAATGTGGATGTAGCTGTTGAAATGCCAAAGGAGTGCTTTCAACATAAGGACCACCTAAATCTCCGATATCAACACAAGCGAGCTTTTTACCTGTCCATCATTGCATCACATTTAACGAACACCTCTCTATTTGAGAGTGTCCAGTTCAGTTATATGAGTGGAGAGGTATTAAGGCCAATCCTTGTGCTTAAACCAGAAGGCAAAGCTGGCAAACAGTTTGTCATCAGATTGCATCCCTCTTTATCAGAAGGCACTTTCAAACCTCAGAGGCTTTCTCCAATCAGGAACAATGTTAAACGGCGTTGGTTCACAGGAGAGGAGGGTATGGCTGATGACATGGATGACACAGGGCTGCCAACCCCTCATTACAACGCATCAGTATTGTCAGACATGTTCCTGGAACATCACCTTCACCACTTGTACAAATGCATCACGGATTTTCCAGGAATGAAAGATGCTGTGGCTCTCATCAAAGTTTGGTTGCATCAGCGGGAACTTGATAAGGGCCAGGGTTGCTGCAGCGGATTTTTAGTGTCTATGTTCATCTCTCATTTACTACTTATCAAGAAAATCAACAAGCAGATGAGTTCATATCAGATCCTTAGAGTTTTCCTACAGTTCCTTGtgtcaAATGATTTGACAAAAGAAGGAATAACAATGACCAGGGAAGACAGTGATGACAGTAATGTGccatcAAAGGCAGATTTTCATGCAGGGTTTGATGTGGTGTTTGTGGACCCATCTGGTTACCTAAACCTTTGTGCAGGAATGACTAGGGCACAGTACAATAGATTACAGTCTGAAGCCAGGTTATCTTTGGAATATTTGGATAACAGTTTTATGGATGGCTTTGAAGTTCTTTTTATGAAGTCTGTGCCATTTATTCAAACATTTGATCAATATCTGCAAATTCCAAATATTAGTTCTTTGGAGGTGGTTTGTAAGAAGGATGACCTTCTTGGTCACCTTATCGACCATCCTGGAGATTGGACTCCAGTTGTTACTGATTGGCTACTTCATCTTGTTGATAAGGGTCTGGGAAAGAGAGTAGACATGCTGTGCTTTGAGCCACAGGCACCTTGTCAGTGGCCAGTTGGCAAGACTCCACCCGACAGAGGTCAGAAGGCTTTGACTCTGGGTTTGCTGTTGAACTCTGATCATTCTGATGTCGTACTTGACACGGGACCCCCAGCCGACAGCGCAGAGGCGACATCTTTTCGATCATTTTGGGGCGAGAAGTCTGAGTTGCGTCGATTTAAAGATGGATCCATCCTGGAGGCGGTGTTATGGCCGTGCAACAGTTTAGCAGAAAAACGAACTATatgtgaaaaaattatcaaacacCTTATTCAAAGgcACGGAGATGTCGACACTTCGTCGTTCACGTACGTTGCGAGTCAGTTGGACTGCGTACTGCAGACTCGTGCTGAATCTGCTAACAGTGGAACAGGCGAGGAGGATGCAGAGAGAGTGAATCAAGTTTATAACACCTTGTGTAAACAGATCCGAGCGTTGGAGCTGCCACTTAGTGTGAGCTCGTTGCAGGGAATAAGCCCGGTGTTTAGGGGAGCAGAGGTTTTTCCACCAAGAGCTTGCTTTAAAAATAGCAAAGTCAAACCGCAACCTGGCAAGGAAAACCTGGCAGACAATGTTTCACTGCCGTCTGAACTAAAGAACACCTCTTGGTGTCCAGCTATGGAAGTTGTCTTGCAGTTTGAAACGAGTGGAAAATGGCCGGATGACTTGACCGCCATTCAACACATCAAAGCGGCATTCCACATAAGACTTGCCGAGTTACTGAAGAGCAAATGTTCACTCGTTACTGCCGCTTCACGTCATCATTTAGACGTACTGAAGGATGGTTTTGTGTTCAGAGTAAAGATCATGCACTACCGTGAAATGGTGTTGCTCCAAAAAAGCGATATCTCTCAGGAGTCAAAAACAGATCACGAGAAGAAAGCTAAAGAACTAGAACGTGAATTAACACATCTACCATTATTGACAAGTACTCTTCATGGGATACAACAGCAGTTTAGTGGATATAGTGGAACTGTACGTTTGGCAAAACGCTGGATGTCGGCTCAACTGTTGTGTGATCATATGACTGAAGAGTGTATCGAGCTATTGGTTGCCTCTCTGTTCCTCTCCCCAGCCCCCTTCGCTCCTCCCAGATCTCCCTTCATTGGATTTCTTCGATTTCTTCATCTGCTGTCTTCGACCGATTGGCAAACAACGCCGATAGTTCTAAATTTCAATAATGACATTTCTGCTGAAGAATACCAGGAAATAACTTCCAAGTTTTCAAATAACAGAGCGCGGCTTCCAGCGATATTTATTTCTACTCCTAGAGACAAATTTACTTCTTTGTGGACAAAGGACAAACCCTCCAAACAGATTGTTAATAGACTTTCCTTGCTGGCGAGAGAGTCGCACTCAGTCTTGGAACATCAAATTAAAACGTGTGCTCTTCAAACAACAGATTTCAAGTTAATCTTCCGTCCGCCATTGGATCATTATGACGTCATCATCCATCTTCACCATCGTCTCCTCCCTCGAAGAACCCAGGCCTTGGATCGTGTGAAACATTCAACAGAGGACACCTCGATATCAAGTCCACCTGTTTTACTTCCGGTCGTCAACTTTGACCCTACGCGCTTGTATCTCGAAGAACTCAAGgaggcGTTTTCCGAAGTCGCGGTGTTCTTTCACGATGTTTATGGAGGGGACATTATTGGAGTTTTGTGGAAACCCTACAGCTTTGTACCAGCTCAGTTTAAGGTTCTACACGTGCAGTACAAGATGCCATTAACCATTCCTCAAAAGAGTGCAAAGtcCAAGCAAGTCCCAAGCTGGGTCATACCGAGTATATCAGCCATCTTGTCTGACTTTCAAACAATCGGAGACGGATTGGTGAAGAAAATCGAGGTGATGAATgcttgaagaaagaaaaaacaatccAACAAATCCTCAAGGGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17403 all species →	Nrap_D2	Nrap protein PAP/OAS-like domain	Domain	Interproscan
PF17407 all species →	Nrap_D6	Nrap protein domain 6	Domain	Interproscan
PF17405 all species →	Nrap_D4	Nrap protein nucleotidyltransferase domain 4	Domain	Interproscan
PF17404 all species →	Nrap_D3	Nrap protein domain 3	Domain	Interproscan
PF03813 all species →	Nrap	Nrap protein domain 1	Domain	Interproscan
PF17406 all species →	Nrap_D5	Nrap protein PAP/OAS1-like domain 5	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035367 all species →	Domain	Nrap protein, domain 2	Interproscan
IPR035371 all species →	Domain	Nrap protein, domain 6	Interproscan
IPR035369 all species →	Domain	Nrap protein, domain 4	Interproscan
IPR005554 all species →	Family	NOL6/Upt22	Interproscan
IPR035368 all species →	Domain	Nrap protein, domain 3	Interproscan
IPR035082 all species →	Domain	Nrap protein domain 1	Interproscan
IPR035370 all species →	Domain	Nrap protein, domain 5	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR17972 all species →	NUCLEOLAR RNA-ASSOCIATED PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006364 all species →	Biological Process	rRNA processing	Interproscan
GO:0006409 all species →	Biological Process	tRNA export from nucleus	Interproscan
GO:0032040 all species →	Cellular Component	small-subunit processome	Interproscan
GO:0032545 all species →	Cellular Component	CURI complex	Interproscan
GO:0034456 all species →	Cellular Component	UTP-C complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14544	UTP22, NOL6; U3 small nucleolar RNA-associated protein 22	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.