Gene detail

Detailed information of PFX31829.1 in Stylophora pistillata

Genomic Location: Spis.scaffold31:207917...218668
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

NAGA

ATGTGCACAACCAAAACTTTCACCAAAACAAATCTGCTTACAGGAAATGAAACTCTAGAAGCCAAAACATTATCCCCACCAACCCGTGAGGGCCCTAAAGACAAGGAGATACCAGATATTTGCGTGCAATCTTGGCAGTCAACAGATGAAAACAAGAACTCACACACCAATCTAGATCATCTTGGAATAGACATGTGCTCTGCCACAAAGACTGCGTTAAAATTTCCGGCAAGAAACTGTGTCTTGAGAAGAATCAGCGAAGAAAGAATAGAAACGCAAAAAGATGATGGTAAACTGAAGCCAGATGATAAATCAGCGAGGAGAAGAAAACAAAGCTTATCGTTGGATCCACAACTAGTACTCCAGTGGGCTGCCACGTACAATGATGTTGATACCTTAAAAAATGTAGTGGAAGGCACGAAAGTCGATCTTAATGCTCCAGGAGTTGATGGGTCGTATGCCTTACATCGAGCTGCTAGCACAGGGAGCCTTGAATGTCTTCAGTATCTCGTGACCAAAGGTGCGCAGCTGGAGGTTCGCGACAAAGAAGGGTCCTCGCCGCTGGATGCTGCGGTTTGCGAAGGAGAATTTGACTGCGCGCGCTTTCTTATCGAAAAAGGCGCGAGTATCAGTCATATTAAAGACGGATTTACGGACAGGAATCTGGTTAAACCAGCATTTGTAACAAAACAGCTCTTAAAAGCAATGTCTGCTTTGGGCGAAGCAGTGTTTTTATGCCTGTTTTCGACGATTTTACAACAAGTTTGCTCGCTGGATAATGGCCTCGCAGTAACTCCACCAATGGGATGGATGTCGTGGGAGAGATTTCGCTGTGTTACAGATTGCGAGAAGGATCCTAGAAACTGCATCAGTGAAAGACTTTACATGGAAATGGCAGATGCAATGTATTTTGGTGGATATAGCACTGTTGGCTACAAGTATATCTGCATTGATGATTGCTGGACCGATATGAGTCGAACAAAAGATGGTCGGCTGCGGGCGGATCCAAAACGTTTCCCAAACGGAATTAAAAAGCTAGCAGATTACGTTCATGCAAGGGGTCTTAAGTTGGGAATCTATGCAGATTATGGAACCAAGACATGCGCAGGGTACCCAGGGAGCATCCATCATATAAAGAAAGATGCACAGACATTTGCAGATTGGGGAGTGGATTACCTCAAGCTGGATGGTTGTTATGCAAACCCCAAAAAGATGGACAAAGGATACCCAAAGTTTGCCAAGGCACTGAATAAGACAGGCCGCCCCATAGTGTTTTCATGCAGTTGGCCTGCGTACCAAGTCTTCACGGGCATAAAACCCAACTACAAGAAGATCGCGAAATATTGCAATTTATGGAGAAATTATGGTGATATACAGGATTCATTCCAGAGCTTGGTGAACATTTTAAGTTGGTATGGAGACAATCAGGATGACATGATACCAGTGGCAGGTAGCGGACACTGGAACGACCCTGATATGCTAATAATTGGAAACTTTGGTCTGAGTCATGAACAGTCCAAGCTACAGTTTGCTCTTTGGGCCATATTGGCATCTCCTTTGCTCATGTCAAACGATTTACGGGACATTGATGCCAGATCCAGAGAAATTCTTCTGAACACAGAAATAATCGCCGTAAACCAAGACAAGCTCGGAAAACAAGGAAAGCGAGTGATTAAGAACAAAGAAACATTTACAGAGGTATGGGCGCGCCCCTTGTCAGACTGCGGAAGCGTAGCTGTGGTGCTGCTTAGCCTGAGATCAGATCTACCGTCCGATGTGGAAGCCCCGTTCTCAGACGTTGGAATTTCAACAAAAAGTGCCTGCGCACGTGATCTATTCTCTCATCAGCAGCTAGGAATGTATAATGAAACATTCATAGCCAGAGTGAACCCCAGTGGAGTGGTCATGATGAAGCTGACACCGATCTGTGAAGAGGAAAAAAATATAGTCAAAAAGAGAAAAGGAAAAGGAAAAGAAAAACATAAGAAGAGTTGCTGCTTGACCAGTTGTTGA

Transcript

rna-Spis3344_mrna

ATGTGCACAACCAAAACTTTCACCAAAACAAATCTGCTTACAGGAAATGAAACTCTAGAAGCCAAAACATTATCCCCACCAACCCGTGAGGGCCCTAAAGACAAGGAGATACCAGATATTTGCGTGCAATCTTGGCAGTCAACAGATGAAAACAAGAACTCACACACCAATCTAGATCATCTTGGAATAGACATGTGCTCTGCCACAAAGACTGCGTTAAAATTTCCGGCAAGAAACTGTGTCTTGAGAAGAATCAGCGAAGAAAGAATAGAAACGCAAAAAGATGATGGTAAACTGAAGCCAGATGATAAATCAGCGaggagaagaaaacaaagcttATCGTTGGATCCACAACTAGTACTCCAGTGGGCTGCCACGTACAATGATGTTGATACCTTAAAAAATGTAGTGGAAGGCACGAAAGTCGATCTTAATGCTCCAGGAGTTGATGGGTCGTATGCCTTACATCGAGCTGCTAGCACAGGGAGCCTTGAATGTCTTCAGTATCTCGTGACCAAAGGTGCGCAGCTGGAGGTTCGCGACAAAGAAGGGTCCTCGCCGCTGGATGCTGCGGTTTGCGAAGGAGAATTTGACTGCGCGCGCTTTCTTATCGAAAAAGGCGCGAGTATCAGTCATATTAAAGACGGATTTACGGACAGGAATCTGGTTAAACCAGCATTTGTAACAAAACAGCTCTTAAAAGCAATGTCTGCTTTGGGCGAAGCAGTGTTTTTATGCCTGTTTTCGACGATTTTACAACAAGTTTGCTCGCTGGATAATGGCCTCGCAGTAACTCCACCAATGGGATGGATGTCGTGGGAGAGATTTCGCTGTGTTACAGATTGCGAGAAGGATCCTAGAAACTGCATCAGTGAAAGACTTTACATGGAAATGGCAGATGCAATGTATTTTGGTGGATATAGCACTGTTGGCTACAAGTATATCTGCATTGATGATTGCTGGACCGATATGAGTCGAACAAAAGATGGTCGGCTGCGGGCGGATCCAAAACGTTTCCCAAACGGAATTAAAAAGCTAGCAGATTACGTTCATGCAAGGGGTCTTAAGTTGGGAATCTATGCAGATTATGGAACCAAGACATGCGCAGGGTACCCAGGGAGCATCCATCATATAAAGAAAGATGCACAGACATTTGCAGATTGGGGAGTGGATTACCTCAAGCTGGATGGTTGTTATGCAAACCCCAAAAAGATGGACAAAGGATACCCAAAGTTTGCCAAGGCACTGAATAAGACAGGCCGCCCCATAGTGTTTTCATGCAGTTGGCCTGCGTACCAAGTCTTCACGGGCATAAAACCCAACTACAAGAAGATCGCGAAATATTGCAATTTATGGAGAAATTATGGTGATATACAGGATTCATTCCAGAGCTTGGTGAACATTTTAAGTTGGTATGGAGACAATCAGGATGACATGATACCAGTGGCAGGTAGCGGACACTGGAACGACCCTGATATGCTAATAATTGGAAACTTTGGTCTGAGTCATGAACAGTCCAAGCTACAGTTTGCTCTTTGGGCCATATTGGCATCTCCTTTGCTCATGTCAAACGATTTACGGGACATTGATGCCAGATCCAGAGAAATTCTTCTGAACACaGAAATAATCGCCGTAAACCAAGACAAGCTCGGAAAACAAGGAAAGCGAGTGATTAAGaacaaagaaacatttacaGAGGTATGGGCGCGCCCCTTGTCAGACTGCGGAAGCGTAGCTGTGGTGCTGCTTAGCCTGAGATCAGATCTACCGTCCGATGTGGAAGCCCCGTTCTCAGACGTTGGAATTTCAACAAAAAGTGCCTGCGCACGTGATCTATTCTCTCATCAGCAGCTAGGAATGTATAATGAAACATTCATAGCCAGAGTGAACCCCAGTGGAGTGGTCATGATGAAGCTGACACCGATCtgtgaagaggaaaaaaatatagtcaaaaagagaaaaggaaaaggaaaagaaaaacataagaaGAGTTGCTGCTTGACCAGTTGTTGACATAATCAGGAGCTCTTGACTGTGTT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17450 all species →	Melibiase_2_C	Alpha galactosidase A C-terminal beta sandwich domain	Domain	Interproscan
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF16499 all species →	Melibiase_2	Alpha galactosidase A	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017853 all species →	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR035373 all species →	Domain	Alpha galactosidase A, C-terminal beta-sandwich domain	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR002241 all species →	Family	Glycoside hydrolase, family 27	Interproscan
IPR013785 all species →	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan
IPR013780 all species →	Homologous_superfamily	Glycosyl hydrolase, all-beta	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11452 all species →	ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004553 all species →	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0004557 all species →	Molecular Function	alpha-galactosidase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0009311 all species →	Biological Process	oligosaccharide metabolic process	Interproscan
GO:0016139 all species →	Biological Process	glycoside catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for PFX31829.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.