Gene detail

Detailed information of PFX32026.1 in Stylophora pistillata

Genomic Location: Spis.scaffold28:582770...601473
NR annotation: no NCBI-NR hit recorded
Species abbreviation SPIST · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

mis3

ATGATGGCGGACGGCGAGTCAGCAGGAACAGAACAGACGGGTGGCAGCAAGAAAAGAAACTACAGGAAAGACAAACCCTGGGATCACGAGGGAATTGACCATTGGAAAATCGAACCATTCTCAAATGAAGACAATCCTCATGGCATGATAGAGGAGAGTTCGTTCGCAACTTTATTTCCTAAATATAGAGAAAAATACCTGCGGGAGTTCTGGCCTTTGGTGGAAAAGAAGTTGAAGGAATCTGCTCAGCGTGTTTTAGAAGATGATGTTGCATGTGACATCATTAAGATAGGATCTCTTGTTCGTAACCGAGAAAGGTTTGTGAAGAGAAGACAAAGGCTGCTAGGTCCAAATGGAGCTACATTAAAGGCTCTTGAATTACTCACACAATGTTATATCATGGTACAAGGCAATACTGTGGCATCACTTGGTCCATACAAAGGACTTAAACAGGTTCGTAAAGTGGTGGAAGACACAATGAAGAACATACATCCGATTTATAACATCAAGACACTAATGATAAAGAGAGAGTTAGCCAAAGATCCAGAGTTGAAAAATGAATCTTGGGACAGATTTTTGCCCAAGTTTAGACAGACCACTGCAAAGAAGGTTAAGAAAGCCAAGTTTAAGAAGAAGGAATATACTCCATTCCCTCCGCCTCAAACAGAGAGCAAGATTGATAAACAGTTAGCCAGTGGTGAATATTTTCTACAAGAAAAAGAAAGGAGACTGAAAGCTCAGCAGGAAAAGAAGGTCATTATCAAGTCTCATGATAGTCTCAAGTGGAAATACATGAAGTACTGTAATGAAAACAATGGAGGGTGCCCAGCATATGCTTTTTATGAAAAAGCTAAGATTCCTGAGTCAGCCAAGAGCAAAACTAAGGCGTCAGGGGCCACTAGAATGCAGTCCTCTTCAAAAGCCACCGGGAGACCACATTGCCTCGAGTACTGTGATGGGAATGTTGCAGAGTTTTATTGTCCAGAATGTGGTGCCATGTTTTGCAGTAGTTGTTATGACAGAGAACACTGTGGAAATGAACGGAAAGCACAGCATGGGAAACTAACTGAACTTAGAGCTATTTGCAGCGAGCACAAACACACTCTTGATTATTTTAACCTGACCCTGCTTCAACCAATGTGCATCATATGCAAAAAGGAGAGTATGCTTTTACCTGAACATGAACACCATGTTATTGAACACATAGAAACAACTGTATCAACACTAAGATCTCTCATGGAAAAGAAATTACAAGATGCTGCAGAATCAATTGGAAGGATAGCATGTCAACTAGCCAAGGGTGAAACTTCAACCCACAGTGGGTTGAATGCCTCAATCAGCCATGTTCAGTGCTGTTTTGCTAAGCTGCGGCAGATACTTGATGAGAGGGAAGCCCAACTTGTGCAAGATACCAAAAAGTATTTTGATGAGTTCCTCGAAAGTGGTGAAGGAATAGCACAAGCCAGAAACATGTTAAGAAATCTCAGGTCTCTCACTGAGGAAGGAAAGCTGCTCTTGAATAAAGATTCTAGAAGCCTTGTGGTAGAATTCCCAGCAGTCTTCATGCGCCTCAAAGAACTGTGTGCTTTGACTGCCAATGAATGCCAGATGAAAAGTCTCAAAATTGCAATTTATTTTGGACAAGATGTAGTGAAACAGCTAAGACAAGCTGGGGTTATGAGTGCAGAGTATTCTTATCTGTCTAAAGCAAATGGAAGGCAGGAGAATTCAAATGATTTAGACAGTGGTTGTACCTGCAGCTCTATGCAGGATTGTCATACAGGTATTGTCAAAAGTCCATATCATTCTATAGAACTTATTGGTAATAAAGGAATTATGATATTTGGCTGTAAGAATGACAAGCAACTCATAACAAATGTGGGTGAATCAGCTAAAGGAAGTGGGTGTGATGACAAGAAAAAAATATCTTCAAATGAAATTGCAAATATTGTTGTATTTTGTGATGTAGTAGATGTTGATACAAAGAGGTGCATGGCAGACTCTCCTGGAGGACTTTGCAAAGAACCCACCTCTGATCAAGCCAAGAAAAGTGGTGCCAAGAGGCACTCTTCTGATGTGTCTGGAAGTCCTCTCAAGAAAGCTAGGAAAATTGATGCAACAGTTGATTTCCCTGAAGAGCAGGAAAAGTCTCTCATATCTAGAACCCCAGACAAAGTTGAAGCAGGAACACCAGCCAGAATCATGTCACCCTCACCTTTAAAGCCATCAAAACTTAACAAATTGAGGGTTTTATTGAAAACCTCACCACAGCACAGCCCTGTTGCCTCTCCAAGTAGGAAGACTTGTGTGGCATCACCACAGCACAGCCCTGTTGCCTCTCCTAGTAGGAAGACTTGTGTGGCATCACCAAGGAGAAAGAGGGGAGGAGAAATGAGCAAAGAATTTATGAAGTGCGACATAATTCTAAGAGAAATATGGGCTCACGACGAGAGCATCCCATTTGTTCGACCTGTGGATAAAAAACAGTCACCAGATTACTATAAAGTCATCAAGAAGCCCATGGACCTGACTATTGTGAGAGAGAAGTTGCATTCTCTTCAATATGCATCTGTCGTGGACTTCTTAGAGGATATAAGTTTGATGTTGAACAACTGCAAAACGTACAATAAGCCGGGAACGTACGTGTATGATTCAGGTGAAGATTTGAGCAACATCTTCAACCGTTTGGTACAAGAGAACTTTCCAAACTTTGAAGAGGCGCTTTTGCAAGATTCGGAGAATGGGACTCAGTGA

Transcript

rna-Spis3148_mrna

ATGATGGCGGACGGCGAGTCAGCAGGAACAGAACAGACGGGTGGCAGCAAGAAAAGAAACTACAGGAAAGACAAACCCTGGGATCACGAGGGAATTGACCATTGGAAAATCGAACCATTCTCAAATGAAGACAATCCTCATGGCATGATAGAGGAGAGTTCGTTCGCAACTTTATTTCCTAAATATAGAGAAAAATACCTGCGGGAGTTCTGGCCTTTGGTGGAAAAGAAGTTGAAGGAATCTgctcagCGTGTTTTAGAAGATGATGTTGCATGTGACATCATTAAGATAGGATCTCTTGTTCGTAACCGAGAAAGGTTTGTGAAGAGAAGACAAAGGCTGCTAGGTCCAAATGGAGCTACATTAAAGGCTCTTGAATTACTCACACAATGTTATATCATGGTACAAGGCAATACTGTGGCATCACTTGGTCCATACAAAGGACTTAAACAGgTTCGTAAAGTGGTGGAAGACACAATGAAGAACATACATCCGATTTATAACATCAAGACACTAATGATAAAGAGAGAGTTAGCCAAAGATCCAGAGTTGAAAAATGAATCTTGGGACAGATTTTTGCCCAAGTTTAGACAGACCACTGCAAAGAAGGTTAAGAAAGCCAAGTTTAAGAAGAAGGAATATACTCCATTCCCTCCGCCTCAAACAGAGAGCAAGATTGATAAACAGTTAGCCAGTGGTGAATATTTtctacaagaaaaagaaaggagactGAAAGCTCAGCAGGAAAAGAAGGTCATTATCAAGTCTCATGATAGTCTCAAGTGGAAATACATGAAGTACTGTAATGAAAACAATGGAGggtgcccagcatatgctttttatgaaaaagctaagattcctgagtcagCCAAGAGCAAAACTAAGGCGTCAGGGGCCACtagAATGCAGTCCTCTTCAAAAGCCACCGGGAGACCACATTGCCTCGAGTACTGTGATGGGAATGTTGCAGAGTTTTATTGTCCAGAATGTGGTGCCATGTTTTGCAGTAGTTGTTATGACAGAGAACACTGTGGAAATGAACGGAAAGCACAGCATGGGAAACTAACTGAACTTAGAGCTATTTGCAGCGAGCACAAACACACTCTTGATTATTTTAACCTGACCCTGCTTCAACCAATGTGCATCATATGCAAAAAGGAGAGTATGCTTTTACCTGAACATGAACACCATGTTATTGAACACATAGAAACAACTGTATCAACACTAAGATCTCTCATGGAAAAGAAATTACAAGATGCTGCAGAATCAATTGGAAGGATAGCATGTCAACTAGCCAAGGGTGAAACTTCAACCCACAGTGGGTTGAATGCCTCAATCAGCCATGTTCAGTGCTGTTTTGCTAAGCTGCGGCAGATACTTGATGAGAGGGAAGCCCAACTTGTGCAAGATACCAAAAAGTATTTTGATGAGTTCCTCGAAAGTGGTGAAGGAATAGCACAAGCCAGAAACATGTTAAGAAATCTCAGGTCTCTCACTGAGGAAGgaaaGCTGCTCTTGAATAAAGATTCTAGAAGCCTTGTGGTAGAATTCCCAGCAGTCTTCATGCGCCTCAAAGAACTGTGTGCTTTGACTGCCAATGAATGCCAGATGAAAAgtctcaaaattgcaatttattTTGGACAAGATGTAGTGAAACAGCTAAGACAAGCTGGGGTTATGAGTGCAGAGTATTCTTATCTGTCTAAAGCAAATGGAAGGCAGGAGAATTCAAATGATTTAGACAGTGGTTGTACCTGCAGCTCTATGCAGGATTGTCATACAGGTATTGTCAAAAGTCCATATCATTCTATAGAACTTATTGGTAATAAAGGAATTATGATATTTGGCTGTAAGAATGACAAGCAACTCATAACAAATGTGGGTGAATCAGCTAAAGGAAGTGGGTgtgatgacaagaaaaaaatatcttcaaatgAAATTGCAAATATTGTTGTATTTTGTGATGTAGTAGATGTTGATACAAAGAGGTGCATGGCAGACTCTCCTGGAGGACTTTGCAAAGAACCCACCTCTGATCAAGCCAAGAAAAGTGGTGCCAAGAGGCACTCTTCTGATGTGTCTGGAAGTCCTCTCAAGAAAGCTAGGAAAATTGATGCAACAGTTGATTTCCCTGAAGAGCAGGAAAAGTCTCTCATATCTAGAACCCCAGACAAAGTTGAAGCAGGAACACCAGCCAGAATCATGTCACCCTCACCTTTAAAGCCATCAAAACTTAACAAATTGAGGGTTTTATTGAAAACCTCACCACAGCACAGCCCTGTTGCCTCTCCAAGTAGGAAGACTTGTGTGGCATCACCACAGCACAGCCCTGTTGCCTCTCCTAGTAGGAAGACTTGTGTGGCATCACCAAGGAGAAAGAGGGGAGGAGAAATGAGCAAAGAATTTATGAAGTGCGACATAATTCTAAGAGAAATATGGGCTCACGACGAGAGCATCCCATTTGTTCGACCTGTGGATAAAAAACAGTCACCAGATTACTATAAAGTCATCAAGAAGCCCATGGACCTGACTATTGTGAGAGAGAAGTTGCATTCTCTTCAATATGCATCTGTCGTGGACTTCTTAGAGGATATAAGTTTGATGTTGAACAACTGCAAAACGTACAATAAGCCGGGAACGTACGTGTATGATTCAGGTGAAGATTTGAGCAACATCTTCAACCGTTTGGTACAAGAGAACTTTCCAAACTTTGAAGAGGCGCTTTTGCAAGATTCGGAGAATGGGACTCAGTGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21800 all species →	KRR1-like_KH2	KRR1 small subunit processome component, second KH domain	Domain	Interproscan
PF00439 all species →	Bromodomain	Bromodomain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036612 all species →	Homologous_superfamily	K Homology domain, type 1 superfamily	Interproscan
IPR036427 all species →	Homologous_superfamily	Bromodomain-like superfamily	Interproscan
IPR048549 all species →	Domain	KRR1 small subunit processome component, second KH domain, eukaryotes	Interproscan
IPR048548 all species →	Domain	KRR1 small subunit processome component, second KH domain	Interproscan
IPR001487 all species →	Domain	Bromodomain	Interproscan
IPR018359 all species →	Conserved_site	Bromodomain, conserved site	Interproscan
IPR004087 all species →	Domain	K Homology domain	Interproscan
IPR024166 all species →	Family	Ribosomal RNA assembly KRR1	Interproscan
IPR000315 all species →	Domain	B-box-type zinc finger	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12581 all species →	HIV-1 REV BINDING PROTEIN 2, 3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0032040 all species →	Cellular Component	small-subunit processome	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for PFX32026.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.