Gene detail

Detailed information of PFX32061.1 in Stylophora pistillata

Genomic Location: Spis.scaffold27:435552...453871
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

patl1

ATGGCGGACCCTCTGTACGGTTTCAGTTCTGAGATTCCGGCGTTTGAGGACGAAGAATTGTCTGAATTAGATCCATCGCTGACGAATCTCGCGGAAGGAGATGAATATGATCAACTAAACGACGATACATTCGGCGATGGAGCATTAGAAGATGATTGGGAATTTGGTCACAGAAAACTTGCAGGTTTGCCATTAGAGGATGAAGCCTCAGAAAGAGCCCAATTCGAGGAGTGGCTAAAGAAAAAGGGGCTCGGATCAACAGGTGATGGTCCTGGGGCAAAGTTTGTAGAGAGAAACATTGAGGAAGATTTTGAAGATGACTTGGATCGAGAAGAGTTTCTCCTCACTTGCTGGAAATTTAGTAGGCTTCATTTTGGTGTAGAGATTTTTCAGAAACTACTCATTATTTTCAAACCACATGCTCAGAAAGACTGGGCCAAGAAGCTCCTACAACAACAGCAAGAGAACGCAGCAGAGCTTAAGCGGGTTCAGGAAGAGTTAAAGGGCGCAAAGTCGCATAAGAGTCAGCAGCCTCGTGCAGCAGATCCTGAGTTTCGTTTTGCCGGTAACAAGAAGCAGTACTTGCTCAATAGGGATGTAATGGATAAGATCGACGAGGCCCTTGAGGCTGAAGACAATGAAGAACATACGCAAAAACTTACGGAAAAAAGCACTAACAAAGCACTGGAGGAGTCAAGGGATTTGTATATTTACTTATTTGGACGATGGTGCAGGATGTCTAGATCACGGTTTGCTTGGTTTGCTCGCTTGGATAGCTGTTGGAGCCCTCACACCATTGACCGCTTTGCCAGTGTGAAAACTAAGCAGCTCGACAGATTTTGTAGCAGATTCCTCAATCCTGGTTGTGAAGCTGTGGATACTTTCACTGTGTCTTGGAAGGGGTTGTCATTTGCTTGTGTTGCAGTGGTGCAGCCTATCTCATGGGAGGTTACTCTTCCAGCAGAATTTGGAGTGGGGTGTTTTGATGATCCAGAGTTGAGGCATTTGGCAAGTTTTCTACCAGCTGTGTTAGTACAGGATAGAGCCACTTCAACAGCAGTAGCCTATCTTCGTGCATACAAGTCCTGGAAGTCATGGGTTGAGCAACACAGTGCCTCTTATTTCCCTGCAGACCCTGTGGTGTTTACTCTCTATTTTGTGTCTATTATCCAGCAGTCCCGCTCAGTGTCCTCCGTTAATATTGCAGTGTATGGGACGTCAAAGAAAGGAGTCCATCTGAGGAGAGAGGGGATGTCATTTAGTCGTGCTAACGAGCGTCTTAAGAAGGAGCTTCTCAAAGAAGGGTTGGACCTGGCAAAATTTGGAATTCACAGCTTGCGTGCAGGAGGGGCTTCCACAGCTGCTGCACTGGGTGTGCCGGACAGACTTTTTCAGAGGCATGGGGGGTGGCAAAGTGAGAAAGCAAGAAACAATTATGTAAAGGAGTCGTTGAGTTCGCTTCTACTTGAAATTCTTGAGCAGAACTTGACAAAACTGGTAGATGATGATGATGGTGACTCTATCCCTGTGCCTAAAGCTTCTTCCAAGTACAAGGACATCAAGCACCCCTCAGGCATTAACCCAGCCTGGGATGGCACATCACCTCTCTCGAGTCCAACTTCAGCTACTTCTTTACATGATTTGATCTCTCCATCTTCCAATATTTGGGGATCACCTTCTAAACTTGACAAGGAAAATACCAACAAAGGACCAGCTAATACTCAATCACCACTTGCAGAGCTGCTTAAGGCAGAGGGTGAAAAGAAGCATGTGCCAAGCAGGCCTTTCTCACCAGCCTTTGAGGATGACTCAATTGTCCAGGCTGTTCCTCGCCAAAGCCTTATACCACCAAGTCGTTTCACAACAAAGCCTCATCCGGCTAATGCAATCAAACTAGAAGATCTGGAAAAGGAACTCACAACAGGTCGTGAAGGTGCCCCTCAGCAAGTTCCAGAAGTGGTTAGGCAAACACCTCACAATTCCATGATAGGACGACCACCTCCTGGCATTCCAAGGCCAATGATGACACCCCCAGGTTTCTCTTCTCCAGTAGCAAGGATGAGCACTCCACGGATGCCTCCCCAGATGTTCCAACAAAGACCTAATCCATCAAAACATCCAATGCCAAGTATGTCTGGAATGCCTGGCATGCCTAGAATGCCTGGTATGCCAGGCCCAAGCCCTCACTTAATGAGAACACCAAGAACACCACATTACCCAAGACATCCATTTCCCATGGTTCACTCAGATCCAGGTCACCTGATGATGAGGGGTGGTATGATGAATTTTCCATTGAGTCCACATCACCAAAGGTTCAGTAGCCCTCAGTTTCCAAACAGAAGATTTCAGGACCCAAGACAGAACTATCAAAGGCAACACTATGATGGCAGAATGTCAAATGATAATCACTCACCCAGACAGCAGGACAGGGGAGAACACCATCATCAGTTTACTGATTTAGAGAAGAAAATTCACAGTATTTTGACAGCAGCTGAAAGTGGCCCAAACCGATTTGATCCCTACGCTGGTATCATGTCAAGACGAGAAAAGGAATGGTTGATTAAGATTCAGCTTCTTCAACTCACCAGCAATGAACCAGAACTGGATGATTATTATTTTCAGACATACACCAGGCGGAAGGCTGCAAAGGAACGGTCAAAGCAAAGTGAGGGCGTGCAGCAGAATGTTGAAGATAACAGAGCAAGTGGAGCGCCAAGAAACATGGCCCTACCTCAGTTTGAACGAGAGAAAAAGAGCTACACTCCACTGGACTTTCAAGGTACTTTAGGGAAGGTGTCTTCATCGTCTGTGCAACATCCAAGACAAATGGTGGATCTAATGCACCTTAGTAAAGCATCTGAACAGGAAAAGCAAGGAAGTTCAACTCCTTTGAAGGATACCAAGCGACGAAGCCAGCTCTTACTTAACATTGAAAAGGGTTATGATTACCTTTTGAACATTGAAAGCTTAGAGAAAAGGTTGATTCTTGTGGGAGAAAAAGAGAGGAAGGAACTCTATGAAACCAGGCAAAACAATGTGAAGAAGCTGTTTGATCTCTTAAAGCTCTCCACGGAGGGTTCTTCAAAGGGTGATGATGAACTCTTCGTGCAATTTACATCTGTTTCTAAGGGTAAACGTCTCCTCTGTAGAGCTCTATCCTTATTTAGCACGGTTCAAATGGAAGCTGTGCTGATGGCAATTACTAGGAACATTTCATCTTTGATTAAAAAAGACAACAGTGAACAGAGTTGGCAGCATTTAATGGTTCCTCTTAATCGCGCTTGTGAACTGGCATCTCCGTCAGTCGTAATTGAGTGTCTTAAGGACATGGTGTCCACACCCAGTATCTCTAACTCACAAGGATCACTTAGTGCAGTGCTTCTCAATCAGTTTGGCGTAGGAGTTCTGAGTATACTGTTAGGGAGAGCAGCCGTCATTTCTAGCAGTTTAACTGAATCAGATGATGACATGCGGAAATCCTGGTTAAGCATTGTTTCTCAAGTGGCAAGCAAGTTTCAGGACCTGCCAGTAAAACAGCTGGGAAGAAACCTTGTAGCAGCCGACAGATTAGTTGCGCTTCTGTCAACCTGTACAGACGTACAGACCAAAGCTTTACTACAGGAGCACTTGAGATTGGCTGCCTCTGCTAAGTCAGAAATCTCGGCGTAG

Transcript

rna-Spis3054_mrna

ATGGCGGACCCTCTGTACGGTTTCAGTTCTGAGATTCCGgCGTTTGAGGACGAAGAATTGTCTGAATTAGATCCATCGCTGACGAATCTCGCGGAAGGAGATGAATATGATCAACTAAACGACGATACATTCGGCGATGGAGCATTAGAAGATGATTGGGAATTTGGTCACAGAAAACTTGCAGGTTTGCCATTAGAGGATGAAGCCTCAGAAAGAGCCCAATTCGAGGAGTGGCTAAAGAAAAAGGGGCTCGGATCAACAGGTGATGGTCCTGGGGCAAAGTTTGTAGAGAGAAACATTGAGGAAGATTTTGAAGATGACTTGGATCGAGAAGAGtttctcctcacttgctggaaatttagtaggcttcattttggtgtagagatttttcagaaactactcattattttcaaaccacatgctcagaaagACTGGGCCAAGAAGCTCCTACAACAACAGCAAGAGAACGCAGCAGAGCTTAAGCGGGTTCAGGAAGAGTTAAAGGGCGCAAAGTCGCATAAGAGTCAGCAGCCTCGTGCAGCAGATCCTGAGTTTCGTTTTGCCGGTAACAAGAAGCAGTACTTGCTCAATAGGGATGTAATGGATAAGATCGACGAGGCCCTTGAGGCTGAAGACAATGAAGAACATACGCAAAAACTTACGGAAAAAAGCACTAACAAAGCACTGGAGGAGTCAAGGGATTTGTATATTTACTTATTTGGACGATGGTGCAGGATGTCTAGATCACGGTTTGCTTGGTTTGCTCGCTTGGATAGCTGTTGGAGCCCTCACACCATTGACCGCTTTGCCAGTGTGAAAACTAAGCAGCTCGACAGATTTTGTAGCAGATTCCTCAATCCTGGTTGTGAAGCTGTGGATACTTTCACTGTGTCTTGGAAGGGGTTGTCATTTGCTTGTGTTGCAGTGGTGCAGCCTATCTCATGGGAGGTTACTCTTCCAGCAGAATTTGGAGTGGGGTGTTTTGATGATCCAGAGTTGAGGCATTTGGCAAGTTTTCTACCAGCTGTGTTAGTACAGGATAGAGCCACTTCAACAGCAGTAGCCTATCTTCGTGCATACAAGTCCTGGAAGTCATGGGTTGAGCAACACAGTGCCTCTTATTTCCCTGCAGACCCTGTGGTGTTTACTCTCTATTTTGTGTCTATTATCCAGCAGTCCCGCTCAGTGTCCTCCGTTAATATTGCAGTGTATGGGACGTCAAAGAAAGGAGTCCATCTGAGGAGAGAGGGGATGTCATTTAGTCGTGCTAACGAGCGTCTTAAGAAGGAGCTTCTCAAAGAAGGGTTGGACCTGGCAAAATTTGGAATTCACAGCTTGCGTGCAGGAGGGGCTTCCACAGCTGCTGCACTGGGTGTGCCGGACAGACTTTTTCAGAGGCATGGGGGGTGGCAAAGTGAGAAAGCAAGAAACAATTATGTAAAGGAGTCGTTGAGTTCGCTTCTACTTGAAATTCTTGAGCAGAACTTGACAAAACTGgtagatgatgatgatggtgactCTATCCCTGTGCCTAAAGCTTCTTCCAAGTACAAGgACATCAAGCACCCCTCAGGCATTAACCCAGCCTGGGATGGCACATCACCTCTCTCGAGTCCAACTTCAGCTACTTCTTTACATGATTTGatcTCTCCATCTTCCAATATTTGGGGATCACCTTCTAAACTTGACAAGGAAAATACCAACAAAGGACCAGCTAATACTCAATCACCACTTGCAGAGCTGCTTAAGGCAGAGGGTGAAAAGAAGCATGTGCCAAGCAGGCCTTTCTCACCAGCCTTTGAGGATGACTCAATTGTCCAGGCTGTTCCTCGCCAAAGCCTTATACCACCAAGTCGTTTCACAACAAAGCCTCATCCGGCTAATGCAATCAAACTAGAAGATCTGGAAAAGGAACTCACAACAGGTCGTGAAGGTGCCCCTCAGCAAGTTCCAGAAGTGGTTAGGCAAACACCTCACAATTCCATGATAGGACGACCACCTCCTGGCATTCCAAGGCCAATGATGACACCCCCAGGTTTCTCTTCTCCAGTAGCAAGGATGAGCACTCCACGGATGCCTCCCCAGATGTTCCAACAAAGACCTAATCCATCAAAACATCCAATGCCAAGTATGTCTGGAATGCCTGGCATGCCTAGAATGCCTGGTATGCCAGGCCCAAGCCCTCACTTAATGAGAACACCAAGAACACCACATTACCCAAGAcatccatttcccatggttCACTCAGATCCAGGTCACCTGATGATGAGGGGTGGTATGATGAATTTTCCATTGAGTCCACATCACCAAAGGTTCAGTAGCCCTCAGTTTCCAAACAGAAGATTTCAGGACCCAAGACAGAACTATCAAAGGCAACACTATGATGGCAGAATGTCAAATGATAATCACTCACCCAGACAGCAGGACAGGGGAGAACACCATCATCAGTTTACTGATTTAGAGAAGAAAATTCACAGTATTTTGACAGCAGCTGAAAGTGGCCCAAACCGATTTGATCCCTACGCTGGTATCATGTCAAGACGAGAAAAGGAATGGTTGATTAAGATTCAGCTTCTTCAACTCACCAGCAATGAACCAGAACTGgatgattattattttcagACATACACCAGGCGGAAGGCTGCAAAGGAACGGTCAAAGCAAAGTGAGGGCGTGCAGCAGAATGTTGAAGATAACAGAGCAAGTGGAGCGCCAAGAAACATGGCCCTACCTCAGTTTGAACGAGAGAAAAAGAGCTACACTCCACTGGACTTTCAAGGTACTTTAGGGAAGGTGTCTTCATCGTCTGTGCAACATCCAAGACAAATGGTGGATCTAATGCACCTTAGTAAAGCATCTGAACAGGAAAAGCAAGGAAGTTCAACTCCTTTGAAGGATACCAAGCGACGAAGCCAGCTCTTACTTAACATTGAAAAggGTTATGATTACCTTTTGAACATTGAAAGCTTAGAGAAAAGGTTGATTCTTGTGGGAGAAAAAGAGAGGAAGGAACTCTATGAAACCAGGCAAAACAATGTGAAGAAGCTGTTTGATCTCTTAAAGCTCTCCACGGAGGGTTCTTCAAAGGGTGATGATGAACTCTTCGTGCAATTTACATCTGTTTCTAAGGGTAAACGTCTCCTCTGTAGAGCTCTATCCTTATTTAGCACGGTTCAAATGGAAGCTGTGCTGATGGCAATTACTAGGAACATTTcatctttgattaaaaaagacaACAGTGAACAGAGTTGGCAGCATTTAATGGTTCCTCTTAATCGCGCTTGTGAACTGGCATCTCCGTCAGTCGTAATTGAGTGTCTTAAGGACATGGTGTCCACACCCAGTATCTCTAACTCACAAGGATCACTTAGTGCAGTGCTTCTCAATCAGTTTGGCGTAGGAGTTCTGAGTATACTGTTAGGGAGAGCAGCCGTCATTTCTAGCAGTTTAACTGAATCAGATGATGACATGCGGAAATCCTGGTTAAGCATTGTTTCTCAAGTGGCAAGCAAGTTTCAGGACCTGCCAGTAAAACAGCTGGGAAGAAACCTTGTAGCAGCCGACAGATTAGTTGCGCTTCTGTCAACCTGTACAGACGTACAGACCAAAGCTTTACTACAGGAGCACTTGAGATTGGCTGCCTCTGCTAAGTCAGAAATCTCGGCGTAG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09770 all species →	PAT1	Topoisomerase II-associated protein PAT1	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011010 all species →	Homologous_superfamily	DNA breaking-rejoining enzyme, catalytic core	Interproscan
IPR013762 all species →	Homologous_superfamily	Integrase-like, catalytic domain superfamily	Interproscan
IPR039900 all species →	Family	Pat1-like	Interproscan
IPR019167 all species →	Domain	mRNA decay factor PAT1 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21551 all species →	TOPOISOMERASE II-ASSOCIATED PROTEIN PAT1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006310 all species →	Biological Process	DNA recombination	Interproscan
GO:0015074 all species →	Biological Process	DNA integration	Interproscan
GO:0000290 all species →	Biological Process	deadenylation-dependent decapping of nuclear-transcribed mRNA	Interproscan
GO:0000932 all species →	Cellular Component	P-body	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0033962 all species →	Biological Process	P-body assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for PFX32061.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.