Gene detail

Detailed information of PFX32161.1 in Stylophora pistillata

Genomic Location: Spis.scaffold26:966820...978997
NR annotation: no NCBI-NR hit recorded
Species abbreviation SPIST · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ORC1

ATGAGTAGTTTCGGAGTTTATTTGCTCAGATTACCGCCATACTTATGCACGATGCCAATGAAAAAAAATAGAGAAATCTCCACTAATACCCTAGAATGGATTGGTAATGGGACTATAGACGATGGAAAAGTATTTTACAGGCTCTCTAGGAAGTCTATATCAAACATGGAACAGGTCTCTGTGAAAAGGATAATTCATGTTAGAACTCCAAAGCATACCCCAAGGAAGATAAACAACACTACAAAAACACCACAAGCTGAAAAGGTGCCAGCTAAGGAAAAGGATAATTCCACTTTGAAGACAAACAAGAAAACTCCTAAGTCAACAAAGAAATTGACAATTGCCAAGAAGTGCATGGTGTCTATAGAGCCATTGGTCTTTAATAGAGAAAGCAGGGCTTCTTTGAAAAGAAGAGCAAGCGGCAGTATTCCAGATGAATCTTCAGTGACACCTAAAAGAAAAAAAGGCCTTCAAAGTACAAGGAAAACAAAAGAACAATTTTTATCTCCAAGGCAGAGATATGGTACAGCAGAAGTCCTTGAACAAGTTCTTGAGAGTGAATCAAGATGTAGCGATGTTGTCAATGATGATGATGATAATGATGAGGATGATAATGATGATGAAATTAGTCATGATGATGATGATGATGTGTTTCATCCAAGCAATGTCAGTGATTTAACAGATGACAGTGACAGGGATGATGAAAGCAATGAAGATAGTGATTGGGTTGTGGAAAAGATTGGTAAAACAAGAAGTGAAGGTACATGCACACCAATAAGAACACTGAGGTCATCCTCCAAGAGCAAGAGTACATTCACAGCAATACAGGACACACCTAAGGGTAAACCTACAGCTAAAACTCTAGCTAGAGTGAAATCGTCACACAAAACACCTCAAAAAACCCCAGCACAGAAACAGTCAAAAACTCCAAAGACTGCGCGAAAAACGCCAAAGACACCAGCCATAAACATCAGTAGGCAGCCATCTCAAAAGAAAGTGAAGACACCAAGTATTCCTGAGAGGCAACAGCCCTGTAAAATACCGGGAACACCTCTTGAAATGGCCAGGAAAAAACTGCACGTGTCAGCAGTTCCTTCGTCTCTTCCTTGTCGTGAAAAGGAGTTTACAGATATCTATAACTTTGTTGAGGGGAAACTTGAGGATGGGACAGGAGGTTGCATGTATATCTCTGGAGTCCCGGGGACTGGAAAAACAGCCACTGTGCATGAAGTATTACGCAGTATACAAGAAGATGAAGACCAGCGGGAATTCACGTTTGTGGAAATAAATGGAATGAAGCTCACAGAACCAGCCCAGGCCTACTCCACCTTCTTTAAGCTGCTCACAGGACAGAAGGCCACACCCGAACACGCCTCTAATCTGTTGGATAAACGGTTCAGTACACTAGTACCTAACAGGGATCCTGTTGTCTTATTGGTGGATGAGTTAGACCTGTTTTGGACACGTAAACAACACGTGCTGTACAACTTGTTTGAATGGCCGACACGGAGACATTCCCGGCTGATTGTTCTCGCCATTGCTAATACCATGGATCTACCGGAACGAATTATGATGAAGCGAGTCTCAAGTCGCTTGGGACTGACTCGACTGACTTTTCAGCCCTACACATTTTCACAGCTACAGGAGATTGTTATGTCTCGCATCATGGGTTTAAACGCTTTTGAACCGGATGCGATACAGCTGGTCTCCAGAAAGGTGGCAGCTGTTTCCGGTGATGCGCGCCGCTGCTTAGACATCTGCCGCAGGGCAGTAGAGATCGCTGACTCGCGATCCAAGAAGAAAGGAACAGCGTTGGTTGGAATGAGTCACGTGGACGCTGCATTGCAGGATATGTTTTCATCGCCGAAGATACGAGCCATGAAATGCTTAACACAAATGGAGGGTCTGTTTCTGAAGTCGGTTATTGCCGAGTTTCGTAGTTCAGGACTGGAAGAGGCAACGTTTGGAGATGTTTTCCAGCAACTTCTCGATTTTTGTCGTATTGAGGGTCTTTCCACACCGACACCATCTCAAGCCGCGGGAGTTTGTTGTCGATTGGGGGCTTGGAAACTACTTCTTGTGGAGGCTGGCCGTCGTGATCTAGAACAGAGAATACGTTTGAATGTCAATCAAGATGATGTACTGTATGCTCTTGAAAAGAAGCACAGGTGA

Transcript

rna-Spis3007_mrna

CGGCCAGATTCGAGTTCTTATGAGTAGTTTCGGAGTTTATTTGCTCAGATTACCGCCATACTTATGCACGAtgccaatgaaaaaaaatagagaaatctCCACTAATACCCTAGAATGGATTGGTAATGGGACTATAGACGATGGAAAAGTATTTTACAGGCTCTCTAGGAAGTCTATATCAAACATGGAACAGGTCTCTGTGAAAAGGATAATTCATGTTAGAACTCCAAAGCATACCCCAAGGAAGATAAACAACACTACAAAAACACCACAAGCTGAAAAGGTGCCAGCTAAGGAAAAGGATAATTCCACTTTgaagacaaacaagaaaactcctaagtcaacaaagaaattgacaaTTGCCAAGAAGTGCATGGTGTCTATAGAGCCATTGGTCTTTAATAGAGAAAGCAGGGCTTCTTTGAAAAGAAGAGCAAGCGGCAGTATTCCAGATGAATCTTCAGTGacacctaaaagaaaaaaaggcctTCAAAgtacaaggaaaacaaaagaacaatttttaTCTCCAAGGCAGAGATATGGTACAGCAGAAGTCCTTGAACAAGTTCTTGAGAGTGAATCAAGATGTAGCGATGTTgtcaatgatgatgatgataatgatgaggatgataatgatgatgaaattagtcatgatgatgatgatgatgtgtTTCATCCAAGCAATGTCAGTGATTTAACAGATGACAGTGACAGGGATGATGAAAGCAATGAAGATAGTGATTGGGTTGTGGAAAAGATTGGTAAAACAAGAAgtgaAGGTACATGCACACCAATAAGAACACTGAGGTCATCCTCCAAGAGCAAGAGTACATTCACAGCAATACAGGACACACCTAAGGGTAAACCTACAGCTAAAACTCTAGCTAGAGTGAAATCGTCACACAAAACACCTCAAAAAACCCCAGCACAGAAACAGTCAAAAACTCCAAAGACTGCGCGAAAAACGCCAAAGACACCAGCCATAAACATCAGTAGGCAGCCATCTCAAAAGAAAGTGAAGACACCAAGTATTCCTGAGAGGCAACAGCCCTGTAAAATACCGGGAACACCTCTTGAAATGGCCAGGAAAAAACTGCACGTGTCAGCAGTTCCTTCGTCTCTTCCTTGTCGTGAAAAGGAGTTTACAGATATCTATAACTTTGTTGAGGGGAAACTTGAGGATGGGACAGGAGGTTGCATGTATATCTCTGGAGTCCCGGGGACTGGAAAAACAGCCACTGTGCATGAAGTATTACGCAGTATACAAGAAGATGAAGACCAGCGGGAATTCACGTTTGTGGAAATAAATGGAATGAAGCTCACAGAACCAGCCCAGGCCTACTCCACCTTCTTTAAGCTGCTCACAGGACAGAAGGCCACACCCGAACACGCCTCTAATCTGTTGGATAAACGGTTCAGTACACTAGTACCTAACAGGGATCCTGTTGTCTTATTGGTGGATGAGTTAGACCTGTTTTGGACACGTAAACAACACGTGCTGTACAACTTGTTTGAATGGCCGACACGGAGACATTCCCGGCTGATTGTTCTCGCCATTGCTAATACCATGGATCTACCGGAACGAATTATGATGAAGCGAGTCTCAAGTCGCTTGgGACTGACTCGACTGACTTTTCAGCCCTACACATTTTCACAGCTACAGGAGATTGTTATGTCTCGCATCATGGGTTTAAACGCTTTTGAACCGGATGCGATACAGCTGGTCTCCAGAAAGGTGGCAGCTGTTTCCGGTGATGCGCGCCGCTGCTTAGACATCTGCCGCAGGGCAGTAGAGATCGCTGACTCGCGATCCAAGAAGAAAGGAACAGCGTTGGTTGGAATGAGTCACGTGGACGCTGCATTGCAGGATATGTTTTCATCGCCGAAGATACGAGCCATGAAATGCTTAACACAAATGGAGGGTCTGTTTCTGAAGTCGGTTATTGCCGAGTTTCGTAGTTCAGGACTGGAAGAGGCAACGTTTGGAgatGTTTTCCAGCAACTTCTCGATTTTTGTCGTATTGAGGGTCTTTCCACACCGACACCATCTCAAGCCGCGGGAGTTTGTTGTCGATTGGGGGCTTGGAAACTACTTCTTGTGGAGGCTGGCCGTCGTGATCTAGAACAGAGAATACGTTTGAATGTCAATCAAGATGATGTACTGTATGCTCTTGAAAAGAAGCACAGGTGAAAAGACGCGTCACCATAGTTAGAATGGCTTCCAAGCTGCTGTTTAGATCGCTCGACTTTTGTTTAGATAAGTTTATTTGACATGCTGAAACGATTTGAATTCGTGTGATGCGgagaaattatttcgttactgtATTTATTAAGATAGGATCAAGCAAAATTTATGGctatttttgaattttcattctcATTTTCCAGAttttatactgaatacttttgtGGAATCATTtttgtattatttcttttgaatgCGTCGAACATCGTTAGGAATGCTTGAATGTATGTTAGATACTTTTATTCatacttttgtaaaataatgtACTTAAGGcgattaaaatgtaaattttttttgcac

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09079 all species →	Cdc6_C	CDC6, C terminal winged helix domain	Domain	Interproscan
PF17872 all species →	AAA_lid_10	AAA lid domain	Domain	Interproscan
PF00004 all species →	AAA	ATPase family associated with various cellular activities (AAA)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015163 all species →	Domain	Cdc6, C-terminal	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR050311 all species →	Family	Origin Recognition Complex 1/Cell Division Control Protein 6	Interproscan
IPR041083 all species →	Domain	AAA lid domain	Interproscan
IPR003959 all species →	Domain	ATPase, AAA-type, core	Interproscan
IPR016314 all species →	Family	Cell division protein Cdc6/18	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10763 all species →	CELL DIVISION CONTROL PROTEIN 6-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0003688 all species →	Molecular Function	DNA replication origin binding	Interproscan
GO:0005664 all species →	Cellular Component	nuclear origin of replication recognition complex	Interproscan
GO:0006270 all species →	Biological Process	DNA replication initiation	Interproscan
GO:0033314 all species →	Biological Process	mitotic DNA replication checkpoint signaling	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0051301 all species →	Biological Process	cell division	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02603	ORC1; origin recognition complex subunit 1	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.