Genomic Location: Spis.scaffold23:601544...644045
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families
| CDS |
| Col1a2 |
| Transcript |
| rna-Spis2734_mrna |
| Protein |
| PFX32411.1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000267 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00092 all species → | VWA | von Willebrand factor type A domain | Domain | Interproscan |
| PF01391 all species → | Collagen | Collagen triple helix repeat (20 copies) | Repeat | Interproscan |
| PF01410 all species → | COLFI | Fibrillar collagen C-terminal domain | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000885 all species → | Domain | Fibrillar collagen, C-terminal | Interproscan |
| IPR002035 all species → | Domain | von Willebrand factor, type A | Interproscan |
| IPR008160 all species → | Repeat | Collagen triple helix repeat | Interproscan |
| IPR050149 all species → | Family | Collagen superfamily | Interproscan |
| IPR036465 all species → | Homologous_superfamily | von Willebrand factor A-like domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR24023 all species → | COLLAGEN ALPHA | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005201 all species → | Molecular Function | extracellular matrix structural constituent | Interproscan |
| GO:0005587 all species → | Cellular Component | collagen type IV trimer | Interproscan |
| GO:0005615 all species → | Cellular Component | extracellular space | Interproscan |
| GO:0030020 all species → | Molecular Function | extracellular matrix structural constituent conferring tensile strength | Interproscan |
| GO:0030198 all species → | Biological Process | extracellular matrix organization | Interproscan |
| GO:0031012 all species → | Cellular Component | extracellular matrix | Interproscan |
| GO:0062023 all species → | Cellular Component | collagen-containing extracellular matrix | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K19721 | COL5AS; collagen type V/XI/XXIV/XXVII, alpha | - | Glycosaminoglycan binding proteins | ko00536 | deepkoala |