Detailed information of PFX32411.1 in Stylophora pistillata

Genomic Location: Spis.scaffold23:601544...644045
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000267 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00092
all species →
VWAvon Willebrand factor type A domainDomainInterproscan
PF01391
all species →
CollagenCollagen triple helix repeat (20 copies)RepeatInterproscan
PF01410
all species →
COLFIFibrillar collagen C-terminal domainFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000885
all species →
DomainFibrillar collagen, C-terminalInterproscan
IPR002035
all species →
Domainvon Willebrand factor, type AInterproscan
IPR008160
all species →
RepeatCollagen triple helix repeatInterproscan
IPR050149
all species →
FamilyCollagen superfamilyInterproscan
IPR036465
all species →
Homologous_superfamilyvon Willebrand factor A-like domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24023
all species →
COLLAGEN ALPHAInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005201
all species →
Molecular Functionextracellular matrix structural constituentInterproscan
GO:0005587
all species →
Cellular Componentcollagen type IV trimerInterproscan
GO:0005615
all species →
Cellular Componentextracellular spaceInterproscan
GO:0030020
all species →
Molecular Functionextracellular matrix structural constituent conferring tensile strengthInterproscan
GO:0030198
all species →
Biological Processextracellular matrix organizationInterproscan
GO:0031012
all species →
Cellular Componentextracellular matrixInterproscan
GO:0062023
all species →
Cellular Componentcollagen-containing extracellular matrixInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K19721COL5AS; collagen type V/XI/XXIV/XXVII, alpha-Glycosaminoglycan binding proteinsko00536deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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