Gene detail

Detailed information of PFX32465.1 in Stylophora pistillata

Genomic Location: Spis.scaffold23:383253...395410
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-Spis2716_mrna

CCGTGTTGAACTGTCATTCTACAAAACTTTCAGCGTTCTTATCCAATTTGTCGCCAACATATCCTGTCCACTTATACGTGAATGGGTAAAATAGCATTGATGATCTCAAACTGATGTACTCTTGAGGGCGAATGCCGTAAAAATCGCCTCAAGATGGCAAGCAATACAAGCTGGCGAATGGACGACATGGATGGCGGTTTGGACGGTGGACTCGCTTCAGAATTACTGAATCTTACTGGTCTTGGCAACGAGTATGGAGCGGATGGTGCATATAACATGAGtGATGTCCTCAACTTGCCGATTTTCAAGGATGAGCCTCCCGGTGGTCCCCTAAACATGGACACCATTGGCTCTATTTCTTCTGCAGTGACAGAAGTAAATGCTGAGTTGAATTCTTTAGACTCTGCCCTCCAAACAAAGCAGGAAACTCCCATGGCTTGTGGCATGTCACCTTCAACGCAGTCATCACCAATGTCATCTGCTGGAGGTTTAGAGGGTAAAAGTCTGAGTTATGGATTTATTTACATTCTGAAAGCACCAACTTCTCCTACAAAGCGTCTTGAAGAGGACTCCTTAACTTACCTTAATCAAGGGCAGGCGTATTTGATGGAAATGATGTACCTCCCAGTGGAGGCTGCGAAATTTGAGGGCAAACATTTAAAAAGTGTGATGAAGCTGTGCTTTTATGAGAGGAAACTTCAAGTCCAAGAATCTGAAAAATATGAAGAGTGGAAAAACAACAGGCCGGCTGACAGAATATTGgaaatagatGTTCCCATGTCAAGTGGTGTTTCGAACATCAGAAGTAAAGGAAACTTGCTCAATTGTTATGAATTTGAGTGGGATCCAAGCAAAGGGGCTGAAGTTTATGTAATTATCAACTGTGTCAGCTCAGAGTTTACCAAGGGAAAGAGTGGTGGAGAAAGTGGTGTCCCATTCAGATTACAAGTAGACTCGTTCTCTCCCAATTCATTGACTGACGCTCTTCCCATCCACAGTGCGGGTTGCCAAGTCAAGGTGTTCAAATCCAAAGGTGCTGATAGAAAGCTGAAAGTTGAAATGCAGAAACTGGAACTTAAAAATAAGGAAGATTTGGATCAGTTGAGACCCATAAGTGCTTTCACAGAACTAACAGAACTTCCACTGATTATAGAGGAGGACAACAATTCTTGCTGGATGTCTCCAGGGTCAGTTGCTGGCTCCATGTCTTCTCCATCTCCAGCAGGCCAGGTCATGGCAACAACCCTGTCGTCACCCTCATCAGTAATGTCTTCACCACCTCCAGCCCTACAGATGTCACCATCTAGTAGTGGGCTGTCCAATTCACCCTCCACAACATGTGGAATGGGATTGACATCAGAGTCTTCTGTCGATGAAACTAGACTCTGGTTACAAAATAACAGATTTCAAAACTACCTAAACTTGTTTGCCAACTACACAGGTGGTGATCTTCTTAGATTAACCAAACAAGACATGGTCCAAATCATGGGGCCTGCTGATGGTATACGCTTGTATAACTCGCTTCAAGCAAGggcTGCTCGTCCACTTCTAACAATGTACATTTGCCTGGAATCAGCCCAACAGAACTCGGGGATGAAAGAATACTATGCTATGTTTCTGGAAGTTCTTAGTCTCAGTGAATTAAGAAAGAAACTTGCGTTAAAATGTAACCTAAATGCTGAGCAGATTGTTGCTTTATACAGacaAGGGCCAACAGGAATTTATGTATTAATTGACGATGAGaTGGTCAGGAATTTTGTGGATGAAGGACATTTTATTGTACAACTAGTCAGAGATGATGATAATACATATcaacttgttttaaaataaaaccagGAAATTACCAGAACAAGGCCATGAATTCATAGTAAGATACTCACAATGTGGATGTGAGTGATTATCAGGCAAATTGCAGGGGTCCTCACTTGAAGGAATATTTGAACAGAGTTGTCTTCCTGGAAAAGGAGTTGTTGAGGTTGTATGAggtggagagagagagaaagagacaAGTCAGGATCAAAACATCATTTTGCTGGCATGCTGAACCTTTGCTGGAATTATGGTGAAGCCATTGACAGAATGGTCAAAAATGGTTTAAAGTGTTGTTTCAGCTGTAGGAGTTTTGTTATGTAGATTTCTGGTGGATATTGTGTGAACAATCGACAGACTTAATTGATGGAGGGATGTCACAAGCAAGACAAGGGAAATAGAAATCGCTGAGCAGTTGCTGGCATGTATGAACacagttttaaagaaaaagaaaataattatttaaactttCATGATCACTGGTTTAAGAAAGTGGAGAGCAATTTGTAATACACAAGAAGAGATTTTGTTGGCAGAAACAGTTATAACTCTTCCTTTCTGTGTGACCAGTGCGCAGGATGCCCTCACCAATCTTTCTTGCAGTGTTTGGTTCAAAcataattttccttaaaaaagtaTCATATCTCAAAATATCCCTCCGGCCTAGGAATTGAGTATTCAAGTATTCCTGCTTGTAACAATGATTAGTACGAAATTGCTGCAGATTCCCAGAACAAGAATAATTGTAATAGTTTGTCCAACCAGAAAGACTAGCTGGAAAAAAAACTGCCCAAATTGTTATGCCACTTTAAAgcagcttagaaaaaaaaatttaattactcAAAACTTATTGAAATTATTATACCTTGTAATATTGATACTCGAGCTAAAAGCTAAGGATctggttttgttggttttatGGTTTAAGTTACATTGCCTTTGAGGCATTTTACACATCAGCATTCACCTTTCAAGCACtatggattttttatttttgtaatgcaaagaatcaaatgaaagtTAGGCAATTTTTCCACACATTGTATTCTTTTTACTAGTTTTAGCTTAACCATTCTTCTACCTCGTTAATCAAAACTTTGACATTATTCCCAAAGTGATTGGTCGTCAGTAGTGCAATTTAGGctgtaatcatactcgtgattaTCTAATTAGACTCCTGCTTCACAGCCCTCCGATTATGTTATCAATTTTTACTAGTTTGAACTTTTCCATTCTTCTACATCATCGATCAAAACTGTGACAAAATTCTCAAATGTGATTGGTCATCAGTAGAGCAATTCAGGCTGTAATAATACTTGTGATTGTCCAATCAGACTCCTGCTTCACAATCCTCTGGTTTTTTCAACCACTCCGCTGTATGATTAGTAATAATTAGTTGTAGGAATGAGTGGAGTTCAACCCAGTCTGTAACCATATGtcaagtgattaacaaaatcacATGACCCCAAAGGGGGAGTCTGATTTATTAAATTGCAAGTATCTTTCCAGATGGAACAGGATGACATGAAGTTTTGTTATCATATAATCAAAGCTATCATGACAAAACATGAGAAACCAACTAGCTATTTGGTAGACATTTTTGTTTGATGCATACTGTCCAATTACACAGGCATGATCCATTTATTGTCCAATTACACTGTCCAATTGCAAGCATGATGCATACTCTGTCCTCTTAGTGCTCAAATCAGGCCAGTGATAACCAATTGGATGTAAgaattttttatagttttgaatTAAGGACCAAATTGAAGCCATTATGGGCCCACCACCATCTTCAAGAGCTTGGCCaaaatatttgctaaataaatatatgttgtGTGTAGATTCACAGGGTAATATAAAACAATCTCACTGATATGGGAAATGCAGCTCAGCAGAGAAAATCTTTATGTCCTCTTGTTGattgataaatgataaattattttttgctaaTTATAGTATTGAAGGCTAGTTATCTTAATCATTAGAACTAATGTCTCCAATGAGAAATACGAAGCAGCCTGAGAATTTTTGCGATAATCCTCCCAGTTTTCTTGGGCCTGAGTCTCAAGTTTTTGTTGGTtacattttaacaaatggtaaacatcacagcgtacactattgagtt

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18016 all species →	SAM_3	SAM domain (Sterile alpha motif)	Domain	Interproscan
PF04516 all species →	CP2	CP2 transcription factor	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR040167 all species →	Family	Transcription factor CP2-like	Interproscan
IPR041418 all species →	Domain	SAM domain	Interproscan
IPR007604 all species →	Domain	CP2 transcription factor	Interproscan
IPR013761 all species →	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11037 all species →	TRANSCRIPTION FACTOR CP2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0001228 all species →	Molecular Function	DNA-binding transcription activator activity, RNA polymerase II-specific	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09275	TFCP2; transcription factor CP2 and related proteins	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.