Gene detail

Detailed information of PFX32474.1 in Stylophora pistillata

Genomic Location: Spis.scaffold22:1094931...1100877
NR annotation: no NCBI-NR hit recorded
Species abbreviation SPIST · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-Spis2676_mrna

AGGCTAGTAAGATGGCGTACGCTAAGCAGGGACAAGAAGGAAAGACAAGGCTTGAACGTTTTCAACAAACTGCACGCGATTTTGGGCACTTCCTTTACAATAAAGATGGCGAAAATGGTGAAGTGCAGGTCATGGGCAGAAATGGCAAGAGCTGGGCGAAGATCACGGTGTTCTTCTTGATATTTTATGGCTGCTTAGCAGGATTTTTCGCCTCAATGTTAGCCATATTCATGACTACGGTACCACCTCGAGAGGAAGGGCCGAAAATGACGAGATATTTAGCGGGAAAACAagGCCTTGTACCTGTCCCATTCTATGAAATAAAGGACTATGGTAATGAAAAGGAATCATATGTGGACAAAATCAACAAACTTTTGCAACctTACAAGGATGCTCTTGAAAGTGATGATTACAACCAGAACTGTACTGAGAGTGAACGTGAAAAGGGTTCTAAGCCCTGTGCCATGGACCTTTCTTCTCTTGGTCCCTGCTATAGCAATGAGACTGATTTTGAATATGGCTATGACGAAGAAAAGCCGTGCATCTTTATGAAGATTAATAGGGTGTACAAGTGGGTCCCTGAACCTAAATCTGGCAAGGATTATGTGGAATTGTCCTGCATATTTCATGAAGGTGGCTCTCCGAATCAGCTGGAAATCTACCCATCAGACAAGCCTGGCTTTGCTACAAGTTTTTACCCTTATCTCTCTGAAGAAAATTGGCTTCCCCCAATTGCTGCCATTAAAGTCAACACCACTAGCCCAGCAGTGATTCGTTGTGAAGCCATTGCCGAAAATATTGAGCGATCTGAGACATACCGTCTTAACCGAGGTGCTACAGGAAGGGTCCGTATTGAAATTAAGCAGAAATAGTGAAGCAGAGGTAAATTGTGAGGTGCAGAATCTGATTGCGCTCAACAATTTAGTGacaggtgttttttttctttattgccACACTAGGTAATGCCTCGTATATACCTTGAATTTTGCCATTACCTAAGTTTGAATTGCTTTAGTTACCATATTCCTTAACCTAGTTCTCtcgaactgaattttttttaagttactcCAAACTTTTGAACTAAGATATTTAAATTGTAGTCATTGAAAACTTCAAACAGAAGTGGGCTGGACAGTTTGGTTTCTGTTTGCAACAGAATGCACCTCAGGCTTCTTAATGATGAGTTTTCTAAATCTGAGTCACATTTAACTTCCAAGGCAACACTTTTAATAAAACTGCAGCATCATTGATTAGGTAAAATTATGGAAAGAAATTCTTTTATTGTCAAACTAAGACAAACTCTTTTTATGTTTGAGGTGGGCAGCATTTATtgtgttttcaatttcttttgttggCCTTACAGTTTACTAACAAGCAGTAGCTATATACTATTCTATTAGGTTAATGGCCTCACAGTAATTTCATTAAATTCAACTTGGTGttaaatttttgcatttgtttaagATCGGTAATGTTTTAGTCTAAGCAGCTACACATTTGGTCATTTTTAATTGGATGAAATATATTTGTGATGAAAATTATTCatgttttattaactttttgatatttaaagTAGTTCTGTCTTGCACAGTTTGAGACATATGTATGATGCACTATGTGTGCATCTATACTTGATTAGTTGATTAGTGTTAAGTTAGCTTAGTCTCTTGCCAATAATCGAAACCCTCTTGAGGACTTTCTTGcattaatgatgatgattactATAGTCACATCTGTGCGGTTATCTGTAGAAGACAATTCAACATTCAGAAGGTTCAGTTTCCTTTGTGtagcttttttttgttaaaaagcaTGCATTTTGATTGACCTTGGACAGTTTTAGGCACACTACCTTTTGTTAAATACATGACTTCTGGTCATGACTTAGAAAATCACCCTTTctataggattttttttttttttattcaagcaCACTTTATCAATGTTTATTAGCTTCTATATAATAGGCATTGCCATAAATTCTGTTATCAACATCATGGGGAGTTATTTGACCATATGCAGGGCTTATTGAGACCATAGCAATCAAGTACACAGAGAGATTGTCGAtcagtttcttttattatgCATGTACTTGTGAAGTTGAGATGATTAGATGTCACCTTCAGCACCTTTCCTGATACATCAAACCTCGTGATGTTTTAGACAGCCACAGTGAAGGAATCGTTGTTTGCTGAAGGATAGCATAGTAAGCTTAGTATTTGAAACTGGTCTTCAATGTGGGAAATCTGTTTTGATGGCAGTGGAAGCATTGGGAGGTAGTCGTACATTCTAAGATCAGTGCAGATTGAAGATTACATTAGGTAGTTACTTGTGTGAATGCTGGTATAACTGATGACAGTTTTCTGTCCCATAAAATTTGTTGATGCATCCTAGTGCCATATTATACTAAGTGTCATTTAAACTTAgtcttttcaattgaaaaatcaCAAACCCTTAGTATGTTActgatgcaatttttttataatgttcctgataattttttcactGTGGTCTTGCTTGTTATCAAGGGTCGTATTAAAGGTGTCTTAAATTT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00287 all species →	Na_K-ATPase	Sodium / potassium ATPase beta chain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038702 all species →	Homologous_superfamily	Sodium/potassium-transporting ATPase subunit beta superfamily	Interproscan
IPR000402 all species →	Family	Sodium/potassium-transporting ATPase subunit beta	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11523 all species →	SODIUM/POTASSIUM-DEPENDENT ATPASE BETA SUBUNIT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005890 all species →	Cellular Component	sodium:potassium-exchanging ATPase complex	Interproscan
GO:0006813 all species →	Biological Process	potassium ion transport	Interproscan
GO:0006814 all species →	Biological Process	sodium ion transport	Interproscan
GO:0001671 all species →	Molecular Function	ATPase activator activity	Interproscan
GO:0006883 all species →	Biological Process	intracellular sodium ion homeostasis	Interproscan
GO:0030007 all species →	Biological Process	intracellular potassium ion homeostasis	Interproscan
GO:0036376 all species →	Biological Process	sodium ion export across plasma membrane	Interproscan
GO:1990573 all species →	Biological Process	potassium ion import across plasma membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01540	ATP1B, CD298; sodium/potassium-transporting ATPase subunit beta	-	CD molecules	ko04090	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.