Gene detail

Detailed information of PFX32501.1 in Stylophora pistillata

Genomic Location: Spis.scaffold22:871010...881315
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ints4

ATGAAGAGATCAAGCCCCGACTATTCCACCACTGTCGTGGAAGAAAAGCCGGTAGAGACTCTAGATTATGGCACTCAAAATCAGCCAGTTTTGAAATTGAAGAGGAGTCGACAAGCTCTCGATGCTTCCAAGAGGCTTGCATTTGAACTGTCACAGTTCTCTACTCAACAAGAAATCCTTCAAACTCTTGTAGATCTCGAAAAAGAGCTTCCTTTAGAGTCGCTAGAAGTTGTGGAATTCGCCATTAGATCTTTGTGGGAGAGGTTTTACCATACTGAAGACGCTGCTGTTAGGGTGAAAGTTATTTCTTTGCTTGGAAGTGTGACTAGATTTCCCGGAGTCAATGTCCAGGCGATCGCTGAAGAGTTAATCAAACTACTAAACGTAAAGGATGAAGACAGGACTAAAGATTCTCACAAAGTATGCTCTCAAATATTCGATACTCTCTTAAGACTTGGAAGACTTTTTGATGAGGAGGCAAAGATTGTCCACCACATTGAGAAGAGTGCCATTGAGCATCTTAAGGACCCTCATTTTTCAGTACGCTGCCGATGCCTTTGTCTGATTGGTCATCTGAATCAAGGAACAGAAGGCTCCCCAAGCAAGGTGGGGTCTGAACCACAGGTTGTGGCACAGAGCTTGTTAGCAAGTTTTGCAAAAGACAGTGACCCCAGGGTACGAACAAGTGCTTTGCAAGCCTTGCTGACATTGCATGACAGAGGGCAGAAACTGGACATGGCGGTTTATGATCAGGCGTCGCTGGCTTTGAATGATGACTATGAGGATGTGCGTATGGCAGCCATCAAGTTAGTTTGGGTTTTCAGTCAGGCTGATCCTGAAAGGACTGTAAAGTTACCATCATCTGATGAGGTTCGCCTGGTGGACGATGCCTTTATAAAGATCTGGCACATGGTGAATGATCTGTCCATGACTGTCCGCAGAGAGGCAGCCGGTTTACTTGGCTCTCTTCATCTCGTTAGTCAAAAGTTTTTGGAGCAGACATTGGATAAAAAGCTTATGTCCCATCTTAAGAGAAAGAAAACGGAACACGAGAAGCGACGTGAGATTCACGCCTCGGGGGGAGCAGATGGCGGGGGGTGGAGCACGGGGCGCACATGGGGTGACAAGGCCCCTGAACCTGAAATCGACCCGGAGGGCGTCAGTCTGATGAGCAGCGGGGCGTGCGGCGCGTTTGTGCACGGGCTGGAAGACGAATTCATGGAGGTACGTTCCGCGGCTGTGGATTCTCTTTGTGAGCTGGCCTATCGCAATTCATCTTTCGCTGTGCAGTCCTTAGACTTCCTGGCTGACATGATGAATGATGAAATAGAAAGCGTCCGGCTCAGTGCTATCAACAGCTTGCGGAAAATCAGCCAGCACATTCAGCTGCGTGAGGACCAATTGGAGACGCTCCTCGGTGTCCTGGAGGATTTCTCGGGGGATACCCGAGAGGCTGTGCGTGAGTTGTTATGTCACTGTGTGTTCGCCACAAGGGCGTGTCTTCACGCTGCCATTCACGCGTTGCTTGGAAACCTGTCAAAATATCCTCAGGATAAATCGTCCATCTGGAGGTGTTCCAAGTTTTTGGGTGAAAAGCATCAACATATTGCTTCCTCGCTTGTACCAGAACTTCTTTCTACCCATCCATTTTTTGCCACCCCAGAGCCATCCATCGATGATCCAGCTTACGTTGCAATTCTTATCCTCGTGTTTAACGCTACAGCCAAAAGTCCCACAATGTTAGCTATGTTCCCAGATCACACCACTCGACATTACGCTTATTTGCGGGACAGTCAACCCGACCTCGTCCCGCATCTTGATAACGAGAAGAGCGTCTCAGATGTGCATAGTAAAAGGTTTGAGGAAGGAGGATCACAAACTGCTAAGAGCTTCTTTGAAAGCGTACAATTGCGGCTTCAACACGTCACATCACTTAAGCTAGTAAACAAACAACAAATATTGAAAACAGCCATTCAAGACCTTAAACACGTAAAGAGCATTGATTCACGGCTTAGCGCCGATGCAGAATGTCTTTGCCTTTATCTCCAATGCAAGCTGATGATCGTTCAGGCTCAACAAGACAAGATGTGGACTGTTCCAGCGGCTATGTGTACTCATCAAAGTTCTGGTCTCAAATCCCTGGTTGAAAGCATCCTGTCGACATCGTATCGTGTTGAGCATACCTTTACTGGTTTGAGTTCTCAGCAAATCTTCCTTCTTCGACAATTAAGACTCATTGCACATGCGTTACAGATCTTAGTCACACAGCGATCTAGTCGAACTAACGAGAGAAACCTAAATTCCATGGTACAAGTTTGGGAATCATTTTTAACCAGAATAAAAACCTTCTCCAACTTCATCAACACAGAGAACATCAACACGGATGCTTTCTGCGCAGAGGTAGTTTCGTTTCCCGGTTTCTTCGAGTCCAACATAACAAATCCGTCCGGAGTAGTGGATTATGTTCAATCTATCATGCTTTCTCATGAAGTCCCATGGTTAGAATTGCACTCTAGCCTGAGCCAGGCATCTGCAGTACTAAATGAACCCCGCGGAAGTTCGGATAATCCCCTTTGCTTTTCTGCTGGCCTAACACTGGGTATCAATGTTGAAGCTATGTTGGAGAACGTCCCGGATGCGAGAAAAGTGAGAGTGCAGGTTGTGTTTCCTGATCTGAGGTGTCATTGGTTTATTCCCAAACGTGACGATATCCACGTGCTTTCTCCAGCGAAGCAGCGACTTGCCACGACTGTCATTTTGTCGCACTCGGCATGGTCAGAACCCGGTTTGGTAGATGTATCCTTAGTTCTCAAGTACACACCTGAAGTTGATGAAGAAAGTGTACTGAAACTCGGTTCACGTGAAGATAGCTCCACAGATGTAGAGACGCAAGGTATAAAGCAGACGAAAAGCGCCAAGGACAGTTTGGTCGACGGCGTAATAAATCTTTGTCCACCTGTTCAAGTATGCATCATGCCAAAGGCGCTAAGATGA

Transcript

rna-Spis2663_mrna

TGGCGCCCGAACTTGGGTTTTTGTTATCTCTATGTTACTCACCTGAACGTGCTTAAATATCTCAAACGATCAAAGCCATGAAGAGATCAAGCCCCGACTATTCCACCACTGTCGTGGAAGAAAAGCCGGTAGAGACTCTAGATTATGGCACTCAAAATCAGCCAGTTTTGAAATTGAAGAGGAGTCGACAAGCTCTCGATGCTTCCAAGAGGCTTGCATTTGAACTGTCACAGTTCTCTACTCAACAAGAAATCCTTCAAACTCTTGTAGATCTCGAAAAAGAGCTTCCTTTAGAGTCGCTAGAAGTTGTGGAATTCGCCATTAGATCTTTGTGGGAGAGGTTTTACCATACTGAAGACGCTGCTGTTAGGGTGAAAGTTATTTCTTTGCTTGGAAGTGTGACTAGATTTCCCGGAGTCAATGTCCAGGCGATCGCTGAAGAGTTAATCAAACTACTAAACGTAAAGGATGAAGACAGGACTAAAGATTCTCACAAAGTATGCTCTCAAATATTCGATACTCTCTTAAGACTTGGAAGACTTTTTGATGAGGAGGCAAAGATTGTCCACCACATTGAGAAGAGTGCCATTGAGCATCTTAAGGACCCTCATTTTTCAGTACGCTGCCGATGCCTTTGTCTGATTGGTCATCTGAATCAAGGAACAGAAGGCTCCCCAAGCAAGGTGGGGTCTGAACCACAGGTTGTGGCACAGAGCTTGTTAGCAAGTTTTGCAAAAGACAGTGACCCCAGGGTACGAACAAGTGCTTTGCAAGCCTTGCTGACATTGCATGACAGAGGGCAGAAACTGGACATGGCGGTTTATGATCAGGCGTCGCTGGCTTTGAATGATGACTATGAGGATGTGCGTATGGCAGCCATCAAGTTAGTTTGGGTTTTCAGTCAGGCTGATCCTGAAAGGACTGTAAAGTTACCATCATCTGATGAGGTTCGCCTGGTGGACGATGCCTTTATAAAGATCTGGCACATGGTGAATGATCTGTCCATGACTGTCCGCAGAGAGGCAGCCGGTTTACTTGGCTCTCTTCATCTCGTTAGTCAAAAGTTTTTGGAGCAGACATTGGATAAAAAGCTTATGTCCCATCTTAAGAGAAAGAAAACGGAACACGAGAAGCGACGTGAGATTCACGCCTCGGGGGGAGCAGATGGCGGGGGGTGGAGCACGGGGCGCACATGGGGTGACAAGGCCCCTGAACCTGAAATCGACCCGGAGGGCGTCAGTCTGATGAGCAGCGGGGCGTGCGGCGCGTTTGTGCACGGGCTGGAAGACGAATTCATGGAGGTACGTTCCGCGGCTGTGGATTCTCTTTGTGAGCTGGCCTATCGCAATTCATCTTTCGCTGTGCAGTCCTTAGACTTCCTGGCTGACATGATGAATGATGAAATAGAAAGCGTCCGGCTCAGTGCTATCAACAGCTTGCGGAAAATCAGCCAGCACATTCAGCTGCGTGAGGACCAATTGGAGACGCTCCTCGGTGTCCTGGAGGATTTCTCGGGGGATACCCGAGAGGCTGTGCGTGAGTTGTTATGTCACTGTGTGTTCGCCACAAGGGCGTGTCTTCACGCTGCCATTCACGCGTTGCTTGGAAACCTGTCAAAATATCCTCAGGATAAATCGTCCATCTGGAGGTGTTCCAAGTTTTTGGGTGAAAAGCATCAACATATTGCTTCCTCGCTTGTACCAGAACTTCTTTCTACCCATCCATTTTTTGCCACCCCAGAGCCATCCATCGATGATCCAGCTTACGTTGCAATTCTTATCCTCGTGTTTAACGCTACAGCCAAAAGTCCCACAATGTTAGCTATGTTCCCAGATCACACCACTCGACATTACGCTTATTTGCGGGACAGTCAACCCGACCTCGTCCCGCATCTTGATAACGAGAAGAGCGTCTCAGATGTGCATAGTAAAAGGTTTGAGGAAGGAGGATCACAAACTGCTAAGAGCTTCTTTGAAAGCGTACAATTGCGGCTTCAACACGTCACATCACTTAAGCTagtaaacaaacaacaaatattgaaaacagCCATTCAAGACCTTAAACACGTAAAGAGCATTGATTCACGGCTTAGCGCCGATGCAGAATGTCTTTGCCTTTATCTCCAATGCAAGCTGATGATCGTTCAGGCTCAACAAGACAAGATGTGGACTGTTCCAGCGGCTATGTGTACTCATCAAAGTTCTGGTCTCAAATCCCTGGTTGAAAGCATCCTGTCGACATCGTATCGTGTTGAGCATACCTTTACTGGTTTGAGTTCTCAGCAAATCTTCCTTCTTCGACAATTAAGACTCATTGCACATGCGTTACAGATCTTAGTCACACAGCGATCTAGTCGAACTAACGAGAGAAACCTAAATTCCATGGTACAAGTTTGGGAATCATTTTTAACCAGAATAAAAACCTTCTCCAACTTCATCAACACAGAGAACATCAACACGGATGCTTTCTGCGCAGAGGTAGTTTCGTTTCCCGGTTTCTTCGAGTCCAACATAACAAATCCGTCCGGAGTAGTGGATTATGTTCAATCTATCATGCTTTCTCATGAAGTCCCATGGTTAGAATTGCACTCTAGCCTGAGCCAGGCATCTGCAGTACTAAATGAACCCCGCGGAAGTTCGGATAATCCCCTTTGCTTTTCTGCTGGCCTAACACTGGGTATCAATGTTGAAGCTATGTTGGAGAACGTCCCGGATGCGAGAAAAGTGAGAGTGCAGGTTGTGTTTCCTGATCTGAGGTGTCATTGGTTTATTCCCAAACGTGACGATATCCACGTGCTTTCTCCAGCGAAGCAGCGACTTGCCACGACTGTCATTTTGTCGCACTCGGCATGGTCAGaACCCGGTTTGGTAGATGTATCCTTAGTTCTCAAGTACACACCTGAAGTTGATGAAGAAAGTGTACTGAAACTCGGTTCACGTGAAGATAGCTCCACAGATGTAGAGACGCAAGGTATAAAGCAGACGAAAAGCGCCAAGGACAGTTTGGTCGACGGCGTAATAAATCTTTGTCCACCTGTTCAAGTATGCATCATGCCAAAGGCGCTAAGATGAGAAAGGACTGGTTGGATCACAACCATTGAAGGCTAGAAAGCTCGTCACCCGTTATACAGGCCTTTTTTCACGCTGTGATTTAATGCACGCATGTTTGCGGTCTGTGACAGTTTCCAATACCTTCATGCCTAACTGCACTTACCACGCCAGTTTGTTACCATCACATTTTGCCGGGTTCCGCGTCTTTTTTCCCAGCTAAGTGCTTCACTTCGTTCGTGCTTTCGGTTATCTTCCTTTTTCACGATTTTGCGCTGCGACCTTCCATCAATATCGCAACTAAGGCAGTAAGAACTTAATAAGCATTGTAGCATTTTTAGACAACATTTAGTCAAACTACACTGcgacaaataaaatgaaaaataattttcaatgttgTTGTACTTGGAATTAG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13646 all species →	HEAT_2	HEAT repeats	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR20938 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016180 all species →	Biological Process	snRNA processing	Interproscan
GO:0032039 all species →	Cellular Component	integrator complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13141	INTS4; integrator complex subunit 4	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.