Gene detail

Detailed information of PFX32525.1 in Stylophora pistillata

Genomic Location: Spis.scaffold22:134402...183290
NR annotation: no NCBI-NR hit recorded
Species abbreviation SPIST · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Hyou1

ATGCCAAATAAAAAGAAAAGCAATCAGGCGAAGAACGCATTTTACTTCTTTATGGTTTCTTTGCGGCCCCAGCTACAAAGGCAGGGGGTAGTTTTGGAAAATGGCATGCAGTCGTTAGCGGAAATTGCTGGCCCTCGATGGAAGGAACTGCCTGAGCATGAGAAAGAGGTTTATCAAGAAATGGCTCGGCAAGACAAAGCTAGTAAGAAATATCGCTCTGCCCGAAATGATAAAATGGACTGCACAGGAGAGTATATATCAAAACGTGTAGATACTGTTAGTTTGAATGAAAAACGTAGGAAAGAAGAAAGAGAAGAAGTAAAGAGGGGTTGGTTACCAGGACGAGCAATATGTGATGAGAAGTTTTATATGATTGGGTTTATGTCCCTGTATGATCTTCCTGATGAAGGATTCCTTCCTTGTGAGTTGGGTGTAGTGGAATATTCACTAAATGGAGGTATAATGCGGAAGATGCACTATTTTATCAAACCAGGAAATATTAGAGTAGGCCTTCGGTACACAGCCATGAGTACAAGTGAAAGAACACATCAGATCCCAGTTGAAGGTTTGGCAAAGAGAGATGACAGCTACCGAAAGATCTGGCTGGACCTGTTACGCTTTGTCAATCAAGAACAAACTCCAGTTTTTCCTCCTGTGTATTGCAGGGCAACAAATGGCCAGTGCGGCTACTGCATATCAGATGTCCTGTGCTCAGTTTATGGCATCCCTCTGACTTCTAGCCATCTACCAGAAAGACCAGATGGAGTCTTCTGCACTGTGATTAAGCCCATAGATAGCAAGGGATGGTCCTCCAAAGAAGAAACACAGCCCAGATATTCACGTAGACCTGTGGAAGACAATGGGCCTTTCGCCTCGAGAGATTATCGCTATTATAATGGTGGAGCTAGAAGTGAAGAAATGCCAAACAAATTGAAGAAAGTGTATGATTTAGAAGGACTGGTGTGTGACTTACACTCACATTTCACAGCTGAATCTGGTAGTACCATGGGGATTTCCAAGTCAAAGGCAACAGAGCTTCTCTCCAGTACTATTTTTGATTATGAACCTAATTCAAGGTGTGACTGGCATGAAAAACAAGAAGTGAAGTTCTGTGCTTTGGGAACAGTCCTGCGGTACTGTACTGCTGTCACAAATAAGGCATCGCCCCTTGGAGGTAACATGGCAGCATGGACTGGAACAGATTTTCCACCACCCCCAGTCGGTCGAGATTTCTCCAGTAATCAAGGTGTGTATACTCGCTCAGGACCCACCTACGACCAACAGAGTCTGCGTGATGATGACAAAGATAATGATGATGATACTGTATACGAGAGGGGAGCTCAAGCACCACCACAGTCCACGGCTTGGCAGTTTTCCCAAAGGCCTCAGTCCCAAGCCCACCAACAAACATCTACCTTTGGAGTGGGTAGAGGTCGGGGAAGAGGACGTGGTAGTCAACTCTCACAACCTCTTCGGCGACCAAACATTCTCAGCATGGCAGCAGGAGGAGCCTCAGCTCGTCAAGTTCTGGACAACACCAGTCATCTACCAGTAATGTTAATTAGAAAGTCAGGAGCAGTGTTATTCAAAGTAGCTGTGGCACTATGCTTCTTTGTCTACTCGTCAGATGGTTTAGCTGTGATGTCTGTGGATCTTGGTAGTCAGTTTATGAAGATAGCCATAGTGAAGCCTGGTGTACCAATGGAAATTGCCCTGAACACGGAATCGAGACGGAAAACACCAGTAGCTGTATCTCTCAGAGATAATGAGCGCTTATTCAGTGATGGTGCTTTGACCACGTCAGTCAAGTATCCAAAGAGTTCTTACATTTACATTCAAAATGTTTTGGGGAAAAAATTCAACAACCCAATGGTAGAACAGTACAAGCAAAGGTTTCCATGGTATGACCTTGAGGAAGATAAAGAGACTGGAACTGTTCTCTACAGACATGATAGTGAGACCACCTTTACTCCAGAGGAAATTCTGGGAATGATACTAAATCACTCTAGAAATATTGCAGAGAAATTTGCTGATCACCCAATGAAAGATGTGGTCCTCACAGTCCCTTCATTTTTCAACCAAGCTGAACGGCGATCTGTTTTAAGGGCTGCAAAGTTGGTGGGGTTAAATGTTCTTCAGTTAATGAATGAAAATACAGCAGTTGCGCTTCACTATGGAGTATTCCGTCGAGCGTCTTTTAACAATACTGAGAGATTTATTATGTTCTATGACATGGGAGCCACAAGCACAGTTGCTACTATTGTGGGCTACAGTACCGTAAAAACAAAAGACAGAGGAATCACTGAGACAGCCCCTCAAGTAGTTGTGAAAGGAGTTGGATTTGATCGTACTCTGGGAGGTCATGCCATGGAAATGTTAATGAGAGATCATCTCATTAAACTGTTCAAGGAGCAACACAAGACACAGGGGGATGTGACGCAGTCTCCTCGTGCCATGGCGAAATTTCTGAAGGAGGCAGCAAGAGTGAAACAAGTTCTAAGTGCGAACACAGAGATCTATGCACAGATTGAGGGTGCATTTGAGGAGAAGGATTTTCGTGCCAAGGTTACACGTGAAGAGTTCGAAGAAATGTGCAGCGGCCTATTGAAAAGAGTCTCGGGTCCCGTCGAACAGGCTCTGAAATCTTCAGCCATTCCATTGGATGAGATTGAAAGTGTGATCCTCGTGGGAGGAGGAACTCGTGTACCGAAAGTGCAAGAACTACTTTTGAAAGCTGTAAAAAAATCAGAACTTGGAAAGAATGTGAACACGGATGAGGCTGCTGCATTAGGCGCTGTTTATCAAGCTGCCAATCTTGGCAAGGGATTCAAAGTGAAGAAGTTTCTTGTGAAAGAAGCTAATATCTACCCAGTACAGGTGTCATTTGAGCGTGTGAATAAGGCAGAAGATGGAAGCGAGACTGTCAAACACATCAAACGTATGTTGTACCACAGAATGAACGCGCTGCCGCAGAAAAAAGTGATGACGTTTAACAGACATACGGACGATTTCTACTTCCACGCAAGCTACACTGATCTGGATTTCTTGAGTGAAGACGAACAGAGCATGCTTGGGTCATTGAATTTGACCACAGTGAACGTCAAGGGCGTGGCCGCTGCGTTAGATAAGCATACACCGAAAGGAGAATCTAAAGGGGTCAAGGCGTACTTTAGGATGGACGAAAGTGGAATTCTAAACCTGGAGAAGGTGGAGTCTGTGTTTGAAAAGCCTGAGGAGAAGTCGGAAGAAGAACAGTCGACGTTTGCAAAAATAGGAAGTAAGATTTCAAGCTTCTTTGGCAGCTCAAAGGAAGAGGAAAATAAGGAGAGTAAAGTTGAGGAAGGAGATAAATCCGAGGGAGTAGAAGGCGAGAAGACCGAAAAAGACAAAACTGGAGAAGAGGCGAAAGCGAAAGAAGATGAAAAATCTGAAGAAAAACCTGCAGAAAAAGACGATGACAAAAAACAGGAGGAGGTAAAGAATGAGGATAAACAGGATGAACAAGGTAAAGAAGATGAAAAAAAAAAGAGTGATGAAAAGAAAGAAAGAGAGGAAAAGGAAGAAAAGAACGAGGAGAAGAAAGAAGAATCGTCTGAAGAGAAAAAAGATGGCGACAAACAGGAGGAGAAGGCTGGAAACAAAACTGAGGAAGTGAAGAACGAAACAACGGACGCGAATAAGCCCAGTAAACCTGTGACTGTCCGTGAACCTCTTGAGATGGCGTTACAATGGGTGGACGTCAGTGACTCGAGCGATGACGCTATATCTGCCTCTGTGAAAAAACTCAAAGACCTGCAGGCGAAGGACGAAGCAAAAGCCGCCAATGAACGAGCGAAGAACTTGTTGGAGACACACATCTACGGCATGAGAGAAGAACTGTTTACTGATACGGGAGTATTATTGTCTACTGAGGAGGAGAGAGAAAAGATCGACCAGGCCCTCAGTGAGGCCTCCGAATGGCTGGACGACGAGGGCTGGGACTTAACTGCCGACGTGTACGAGGCCAAACTGCAAAAACTAAAAGATCAATCGTACGAGTTTAGAATTCGCCTAAAAGAGCACAAGGAAAGACCCAAAGCCTTAGAGATGTTGAAGAACAGCTTAAACCTGTCCAGAACTTTCCTGGTCCAGATAGACAATATCCCAGATAAAGATGAGATTTACACTGCTAAGGATTTGGAGGAACTCAGCAAATTGATCAATGATACAACGGAATGGATTCAAAAGAACGAACAGAAACAAAAGGAGACAAAACCCAGCGACAAGCCTGTCTTGTTAGTAAAGGACATCGAAACTAAGCATGGCAAAGTGGACCGTGAGTTGGTTTATCTTTTAAACAAGGCCAAGTATTACGTGCCCAAGCCAAAAGTCAACGAAACAGCGTCAAACGCGACAAAACCCAAGGCGGACACTAAGAAAGAAAAGCAAGAAAAAGGCAGCAAACCTGAAGGAGCGAGTGCAGATAAAAAAGGAGATAAAAAGGAGAAAGAAGGAGAAAAATCCACCAAAGATGATGATGAAAAGAAAAAGAATGAAAATATGGGAACACAAGAAAAACCTGACGAGTCAAATAAGAAACAGGATGAACAAGATAAAAAAGACTCGGACGAGGCAGAGCCTTTGCCTCTCCCTAGCGCCGAGGCTGAGTCCTCAACAACTGGTGAGCCCGCGGAGAGCTCAAGCTCATCAGAAGGAGATAATACAGAACAGAATGCACAGTCGTCTGATAGCAGCTCTAGCAAAAAACCTGGCGACGAATTATGA

Transcript

rna-Spis2619_mrna

ATgccaaataaaaagaaaagcaatcaGGCGAAGAACGCATTTTACTTCTTTATGGTTTCTTTGCGGCCCCAGCTACAAAGGCAGGGGGTAGTTTTGGAAAATGGCATGCAGTCGTTAGCGGAAATTGCTGGCCCTCGATGGAAGGAACTGCCTGAGCATGAGAAAGAGGTTTATCAAGAAATGGCTCGGCAAGACAAAGCTAGTAAGAAATATCGCTCTGCCCGAAATGATAAAATGGACTGCACAGGAGAGTATATATCAAAACGTGTAGATACTGTTAGTTTGAATGAAAAACGtaggaaagaagaaagagaagaagtaAAGAGGGGTTGGTTACCAGGACGAGCAATATGTGATGAGAAGTTTTATATGATTGGGTTTATGTCCCTGTATGATCTTCCTGATGAAGGATTCCTTCCTTGTGAGTTGGGTGTAGTGGAATATTCACTAAATGGAGGTATAATGCGGAAGATGCACTATTTTATCAAACCAGGAAATATTAGAGTAGGCCTTCGGTACACAGCCATGAGTACAAGTGAAAGAACACATCAGATCCCAGTTGAAGGTTTGGCAAAGAGAGATGACAGCTACCGAAAGATCTGGCTGGACCTGTTACGCTTTGTCAATCAAGAACAAACTCCAGTTTTTCCTCCTGTGTATTGCAGGGCAACAAATGGCCAGTGCGGctacTGCATATCAGATGTCCTGTGCTCAGTTTATGGCATCCCTCTGACTTCTAGCCATCTACCAGAAAGACCAGATGGAGTCTTCTGCACTGTGATTAAGCCCATAGATAGCAAGGGATGGTCCTCCAAAGAAGAAACACAGCCCAGATATTCACGTAGACCTGTGGAAGACAATGGGCCTTTCGCCTCGAGAGATTATCGCTATTATAATGGTGGAGCTAGAAGTGAAGAAATGCCAAACAAATTGAAGAAAGTGTATGATTTAGAAGGACTGGTGTGTGACTTACACTCACATTTCACAGCTGAATCTGGTAGTACCATGGGGATTTCCAAGTCAAAGGCAACAGAGCTTCTCTCCAGTACTATTTTTGATTATGAACCTAATTCAAGgtgTGACTGGcatgaaaaacaagaagtgaagTTCTGTGCTTTGGGAACAGTCCTGCGGTACTGTACTGCTGTCACAAATAAGGCATCGCCCCTTGGAGGTAACATGGCAGCATGGACTGGAACAGATTTTCCACCACCCCCAGTCGGTCGAGATTTCTCCAGTAATCAAGGTGTGTATACTCGCTCAGGACCCACCTACGACCAACAGAGTCTGCGTGATGATGACaaagataatgatgatgatactGTATACGAGAGGGGAGCTCAAGCACCACCACAGTCCACGGCTTGGCAGTTTTCCCAAAGGCCTCAGTCCCAAGCCCACCAACAAACATCTACCTTTGGAGTGGGTAGAGGTCGGGGAAGAGGACGTGGTAGTCAACTCTCACAACCTCTTCGGCGACCAAACATTCTCAGCATGGCAGCAGGAGGAGCCTCAGCTCGTCAAGTTCTGGACAACACCAGTCATCTACCAGTAATGTTAATTAGAAAGTCAGGAGCAGTGTTATTCAAAGTAGCTGTGGCACTATGCTTCTTTGTCTACTCGTCAGATGGTTTAGCTGTGATGTCTGTGGATCTTGGTAGTCAGTTTATGAAGATAGCCATAGTGAAGcCTGGTGTACCAATGGAAATTGCCCTGAACACGGAATCGAGACGGAAAACACCAGTAGCTGTATCTCTCAGAGATAATGAGCGCTTATTCAGTGATGGTGCTTTGACCACGTCAGTCAAGTATCCAAAGAGTTCTTACATTtacattcaaaatgttttggggAAAAAATTCAACAACCCAATGGTAGAACAGTACAAGCAAAGGTTTCCATGGTATGACCTTGAGGAAGATAAAGAGACTGGAACTGTTCTCTACAGACATGATAGTGAGACCACCTTTACTCCAGAGGAAATTCTGGGAATGATACTAAATCACTCTAGAAATATTGCAGAGAAATTTGCTGATCACCCAATGAAAGATGTGGTCCTCACAGTCCCTTCATTTTTCAACCAAGCTGAACGGCGATCTGTTTTAAGGGCTGCAAAGTTGGTGGGGTTAAATGTTCTTCAGTTAATGAATGAAAATACAGCAGttgcGCTTCACTATGGAGTATTCCGTCGAGCGTCTTTTAACAATACTGAGAGATTTATTATGTTCTATGACATGGGAGCCACAAGCACAGTTGCTACTATTGTGGGCTACAGTACcgtaaaaacaaaagacagaGGAATCACTGAGACAGCCCCTCAAGTAGTTGTGAAAGGAGTTGGATTTGATCGTACTCTGGGAGGTCATGCCATGGAAATGTTAATGAGAGATCATCTCATTAAACTGTTCAAGGAGCAACACAAGACACAGGGGGATGTGACGCAGTCTCCTCGTGCCATGGCGAAATTTCTGAAGGAGGCAGCAAGAGTGAAACAAGTTCTAAGTGCGAACACAGAGATCTATGCACAGATTGAGGGTGCATTTGAGGAGAAGGATTTTCGTGCCAAGGTTACACGTGAAGAGTTCGAAGAAATGTGCAGCGGCCTATTGAAAAGAGTCTCGGGTCCCGTCGAACAGGCTCTGAAATCTTCAGCCATTCCATTGGATGAGATTGAAAGTGTGATCCTCGTGGGAGGAGGAACTCGTGTACCGAAAGTGCAAGAACTACTTTTGAAAGCTGTAAAAAAaTCAGAACTTGGAAAGAATGTGAACACGGATGAGGCTGCTGCATTAGGCGCTGTTTATCAAGCTGCCAATCTTGGCAAGGGATTCAAAGTGAAGAAGTTTCTTGTGAAAGAAGCTAATATCTACCCAGTACAGGTGTCATTTGAGCGTGTGAATAAGGCAGAAGATGGAAGCGAGACTGTCAAACACATCAAACGTATGTTGTACCACAGAATGAACGCGCTGCCGCAGAAAAAAGTGATGACGTTTAACAGACATACGGACGATTTCTACTTCCACGCAAGCTACACTGATCTGGATTTCTTGAGTGAAGACGAACAGAGCATGCTTGGGTCATTGAATTTGACCACAGTGAACGTCAAGGGCGTGGCCGCTGCGTTAGATAAGCATACACCGAAAGGAGAATCTAAAGGGGTCAAGGCGTACTTTAGGATGGACGAAAGTGGAATTCTAAACCTGGAGAAGGTGGAGTCTGTGTTTGAAAAGCCTGAGGAGAAGTCGGAAGAAGAACAGTCGACGTTTGCAAAAATAGGAAGTAAGATTTCAAGCTTCTTTGGCAGCTCAAAGGAAGAGGAAAATAAGGAGAGTAAAGTTGAGGAAGGAGATAAATCCGAGGGAGTAGAAGGCGAGAAGACCGAAAAAGACAAAACTGGAGAAGAGGCGAAAgcgaaagaagatgaaaaatctGAAGAAAAACCTGCAGAAAAAGACGATGACAAAAAACAGGAGGAGGTAAAGAATGAGGATAAACAGGATGAACAAGgtaaagaagatgaaaaaaaaaagagtgatgaaaagaaagaaagagaggaaaaggaagaaaagaacgaggagaagaaagaagaatcgtctgaagagaaaaaagatgGCGACAAACAGGAGGAGAAGGCTGGAAACAAAACTGAGGAAGTGAAGAACGAAACAACGGACGCGAATAAGCCCAGTAAACCTGTGACTGTCCGTGAACCTCTTGAGATGGCGTTACAATGGGTGGACGTCAGTGACTCGAGCGATGACGCTATATCTGCCTCTGTGAAAAAACTCAAAGACCTGCAGGCGAAGGACGAAGCAAAAGCCGCCAATGAACGAGCGAAGAACTTGTTGGAGACACACATCTACGGCATGAGAGAAGAACTGTTTACTGATACGGGAGTATTATTGTCTACTGAGGAGGAGAGAGAAAAGATCGACCAGGCCCTCAGTGAGGCCTCCGAATGGCTGGACGACGAGGGCTGGGACTTAACTGCCGACGTGTACGAGGCCAAACTGCAAAAACTAAAAGATCAATCGTACGAGTTTAGAATTCGCCTAAAAGAGCACAAGGAAAGACCCAAAGCCTTAGAGATGTTGAAGAACAGCTTAAACCTGTCCAGAACTTTCCTGGTCCAGATAGACAATATCCCAGATAAAGATGAGATTTACACTGCTAAGGATTTGGAGGAACTCAGCAAATTGATCAATGATACAACGGAATGGATTCAAAAGAAcgaacagaaacaaaaggagACAAAACCCAGCGACAAGCCTGTCTTGTTAGTAAAGGACATCGAAACTAAGCATGGCAAAGTGGACCGTGAGTTGGTTTATCTTTTAAACAAGGCCAAGTATTACGTGCCCAAGCCAAAAGTCAACGAAACAGCGTCAAACGCGACAAAACCCAAGGCGGACActaagaaagaaaagcaagaaaaagGCAGCAAACCTGAAGGAGCGAGTGCAGATaaaaaaggagataaaaaggagaaagaaggagaaaaatccaccaaagatgatgatgaaaagaaaaagaatgaaaatatggGAACACAAGAAAAACCTGACGAGTCAAATAAGAAACAGGATGAACAAGATAAAAAAGACTCGGACGAGGCAGAGCCTTTGCCTCTCCCTAGCGCCGAGGCTGAGTCCTCAACAACTGGTGAGCCCGCGGAGAGCTCAAGCTCATCAGAAGGAGATAATACAGAACAGAATGCACAGTCGTCTGATAGCAGCTCTAGCAAAAAACCTGGCGAcgaattatga

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13017 all species →	Maelstrom	piRNA pathway germ-plasm component	Family	Interproscan
PF00012 all species →	HSP70	Hsp70 protein	Family	Interproscan
PF09011 all species →	HMG_box_2	HMG-box domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009071 all species →	Domain	High mobility group box domain	Interproscan
IPR029047 all species →	Homologous_superfamily	Heat shock protein 70kD, peptide-binding domain superfamily	Interproscan
IPR024970 all species →	Domain	Maelstrom domain	Interproscan
IPR013126 all species →	Family	Heat shock protein 70 family	Interproscan
IPR050451 all species →	Family	Heat Shock Protein 70 (HSP70)	Interproscan
IPR036910 all species →	Homologous_superfamily	High mobility group box domain superfamily	Interproscan
IPR029048 all species →	Homologous_superfamily	Heat shock protein 70kD, C-terminal domain superfamily	Interproscan
IPR043129 all species →	Homologous_superfamily	ATPase, nucleotide binding domain	Interproscan
IPR018181 all species →	Conserved_site	Heat shock protein 70, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45639 all species →	HSC70CB, ISOFORM G-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0060964 all species →	Biological Process	regulation of miRNA-mediated gene silencing	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0140662 all species →	Molecular Function	ATP-dependent protein folding chaperone	Interproscan
GO:0030968 all species →	Biological Process	endoplasmic reticulum unfolded protein response	Interproscan
GO:0034663 all species →	Cellular Component	endoplasmic reticulum chaperone complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for PFX32525.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.