Gene detail

Detailed information of PFX32592.1 in Stylophora pistillata

Genomic Location: Spis.scaffold21:360879...368743
NR annotation: no NCBI-NR hit recorded
Species abbreviation SPIST · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

PIGN

ATGATCCCTTACCAATCGACTCTAAAAGCGCCCGCTAAGCGGTTGGTTTTATTTGTTGCCGATGGATTACGAGCAGACAAATTTTATGAACTTGACGAACACGGAAAAACTCGCGCACCATATTTAAGGGATTTAATCGAAACGAAAGCTAGTTGGGGTGTCTCTCACACACGAGTACCCACAGAGTCTCGGCCTGGACATGTTGCTCTCATTGCTGGGTTCTATGAAGATGTTAGCGCCGTGGCCAAAGGTTGGAAAGAGAACCCAGTGGAGTTTGATTCTACTTTTAATGAAAGCAGATACACATGGGCTTGGGGAAGTCCTGATATCCTACCAATGTTTGCAAAGGGGGCCAGTGGTGACCATGTTTTTACATCCATGTATGAAGATGTTGCAGAAGATTTTGCAAATGAGGATGCTGCTAAGCTTGACACTTGGGTGTTTAATGAAGTAAGAAACTTCTTCAGTGCTGCAAGAAATAATGAAACTTTGAAGAGGATGCTTCATGAGGAGAAAATTGTATTTTTCTTTCACCTTCTAGGAATTGACACCAATGGCCATGCACACAGACCAACCTCCAAAGAATATCTCAGGAATATTGCTGTTGTGGACAAAGGGGTAAAAGAGATGGAAAATGTAATTGAAGAATTTTATGGTCATGATCATGGAACAGCATTCGTGTTGACAGCTGATCATGGTATGACTAACTGGGGGTCCCATGGGGCAGGACATCCTCATGAAACACTGACGCCCTTAGTAGCTTGGGGGGCTGGTGTACAAGGACCAATGGCTCCTGTACGCAGTGTCGATATTGTGGAGGAAACAATAAGGTGGAATCTTGGTCATCTGAAGAGAATAGATGTCAATCAAGCTGATATTGCACCGCTGATGACTTCTCTGATTGGTGTTCCATTTCCTCTGAACTCTGTGGGAATTTTGCCATTGGACTATCTCAACAACTCCGAGCAATACCTGGCAGAAAACCTCTTCATGAATTCACAGCAGATTCTTGCTCAGTATGATGTGAAAGAATTGTTCAGAAAGGAAACTTCTCTGTGGTTTCAGCCCTTCTCTTCCTTGGCAGGTGCAAAGAAAACAGGAATGATTCGCGACATAAAAGAGTTCATGCGAGCCACGAAGTATAAAGAAGCCGAGAGCCTAAGCAGAGATCTAATCAATCTTGCATTGGAGGGACTCAATTACTACCAGAACTACGACAGAGTGTTCTTAAATTTAGTGGTCACTCTTGGATTTTTGGGATGGATATTATGCATCATCCTACAGATTGTCGAAGATCATAGTGAAGTCATCAAAGAGGCGTCCAAACTCGGTAAAGAGAACCTTCAGCCATTGGTGAAGACAGCGCCTCTGGACACCGCTACTTTGGTTCTCGCTTTTCTCGCGGTGATTCTTTTAATTATTCAAAAAGCACCTTGGATGTATTATAGCTACTGCTTAATGCCTTTAGTATTTTGGAATCGCATTGCCAAGAGACTTCACGTGGTCAGAGCTGCCTGGAGCTATATCCGTGAAAAACAGTTGCAGCATAGAGTTCTATTTACCTTTTTGTTCGGTAGTTTCTCGTTAGAGATTCTTGTCATGAGCTTCTTCAGGCGAGAGATTCTCTCTGTAGGTCTTGTGTGTCTTGCTCTGTGGCCGTTCACCACTCAATTGTACAAAACTTGCACGCCATCTGTAGCAGGCTGGATGAGCCTTAGCTTTGCTCTTTCCGTGTTTCCTCTTCTACCTGTTGTCGGACGTGAGGCCAACTATTTCCTGGTGACTGCGGCAGGATTCTTAACTTTGATCATTTTTTGTTCGCTGTTGTTTTACGTTTCCACCGTATCTCAGTTAATGAACACGGAATTAACAAAATCGTGTAAAATCCTGCTCCTTCAAGCTCTACTCACGGCACTAGCAATTTATATCGTGAACAGTACAGCAGCAAGTTTAAAACGAAAACTCGGACTCCCGTTAGTAAACCAGCTTGGCAGTTGGACTATTCTTGTGTCATCCTTTCTGTTACCACTGATCAACTCGAGTAATTTAACGATACGACTGTCGAGTATAGCTATGGCGTTTTCCTCATTGTATCTGTTGATGAGCACTGCCTACGAAAGCCTGTTTTTGCTAGTTCTGTCGCTGCTTATGGGTGCATGGCTTTTGTCTGAACACAAACTCTCTGGCAAAACTCTCGACGCGCTGTTAGAAACGCAACTAAGCAACGCCAGCTCCACGACCACCTATCAGCCAGCTTGGAAGGCCCTTACGAGAGGCATGGACGCTCCTGTGATGAGAAAACTCACTTTAGAGGACCTTCGCTGCGCTTATTTTTTCGTTTTCTTCATCGTAGTGGCCTTCTTTGGAACAGGAAACATTGCTAGTATAAATAGCTTTGACCCTGCGTCCGTTTACTGCTTCTTGACTGTATTCTCGCCCTTTGTTATGGGCAGTTTACTACTCTGTAAAGTTCTCATTCCGTTTGTGATTGTAACATGCGCATTCGACGCAATACACGTAGTGCTCTCGATCCCTGTTCAAAGTCTAGTGTTAGTAGTGCTAGTGATGACGGATTTAATGGGACTGCATTTCTTTTTCCTTGTGCAGGATAGCGGCAGTTGGCTGGATATTGGAACAAGTATCAGTCACTTTGTCATCATGATGGCTTTTATTATATTCTTGCTTCCAATATTCGGTCTGGCTAGGCTCTTTACAGGGGCTTCCCTACCGTTCAGGACGAGCAAGAAAATAGCTTAA

Transcript

rna-Spis2542_mrna

ATGATCCCTTACCAATCGACTCTAAAAGCGCCCGCTAAGCGGTTGGTTTTATTTGTTGCCGATGGATTACGAGCAGACAAATTTTATGAACTTGACGAACACGGAAAAACTCGCGCACCATATTTAAGGGATTTAATCGAAACGAAAGCTAGTTGGGGTGTCTCTCACACACGAGTACCCACAGAGTCTCGGCCTGGACATGTTGCTCTCATTGCTGGGTTCTATGAAGATGTTAGCGCCGTGGCCAAAGGTTGGAAAGAGAACCCAGTGGAGTTTGATTCTACTTTTAATGAAAGCAGATACACATGGGCTTGGGGAAGTCCTGATATCCTACCAATGTTTGCAAAGGGGGCCAGTGGTGACCATGTTTTTACATCCATGTATGAAGATGTTGCAGAAGATTTTGCAAATGAGGATGCTGCTAAGCTTGACACTTGGGTGTTTAATGAAGTAAGAAACTTCTTCAGTGCTGCAAGAAATAATGAAACTTTGAAGAGGATGCTTCATGAGgagaaaattgtatttttctttcaccttcTAGGAATTGACACCAATGGCCATGCACACAGACCAACCTCCAAAGAATATCTCAGGAATATTGCTGTTGTGGACAAAGGGGTAAAAGAGATGGAAAATGTAATTGAAGAATTTTATGGTCATGATCATGGAACAGCATTCGTGTTGACAGCTGATCATGGTATGACTAACTGGGGGTCCCATGGGGCAGGACATCCTCATGAAACACTGACGCCCTTAGTAGCTTGGGGGGCTGGTGTACAAGGACCAATGGCTCCTGTACGCAGTGTCGATATTGTGGAGGAAACAATAAGGTGGAATCTTGGTCATCTGAAGAGAATAGATGTCAATCAAGCTGATATTGCACCGCTGATGACTTCTCTGATTGGTGTTCCATTTCCTCTGAACTCTGTGGGAATTTTGCCATTGGACTATCTCAACAACTCCGAGCAATACCTGGCAGAAAACCTCTTCATGAATTCACAGCAGATTCTTGCTCAGTATGATGTGAAAGAATTGTTCAGAAAGGAAACTTCTCTGTGGTTTCAGCCCTTCTCTTCCTTGGCAGGTGCAAAGAAAACAGGAATGATTCGCGACATAAAAGAGTTCATGCGAGCCACGAAGTATAAAGAAGCCGAGAGCCTAAGCAGAGATCTAATCAATCTTGCATTGGAGGGACTCAATTACTACCAGAACTACGACAGAGTGTTCTTAAATTTAGTGGTCACTCTTGGATTTTTGGGATGGATATTATGCATCATCCTACAGATTGTCGAAGATCATAGTGAAGTCATCAAAGAGGCGTCCAAACTCGGTAAAGAGAACCTTCAGCCATTGGTGAAGACAGCGCCTCTGGACACCGCTACTTTGGTTCTCGCTTTTCTCGCGGTGAttcttttaattattcaaaaagCACCTTGGATGTATTATAGCTACTGCTTAATGCCTTTAGTATTTTGGAATCGCATTGCCAAGAGACTTCACGTGGTCAGAGCTGCCTGGAGCTATATCCGTGAAAAACAGTTGCAGCATAGAGTTCTATTTACCTTTTTGTTCGGTAGTTTCTCGTTAGAGATTCTTGTCATGAGCTTCTTCAGGCGAGAGATTCTCTCTGTAGGTCTTGTGTGTCTTGCTCTGTGGCCGTTCACCACTCAATTGTACAAAACTTGCACGCCATCTGTAGCAGGCTGGATGAGCCTTAGCTTTGCTCTTTCCGTGTTTCCTCTTCTACCTGTTGTCGGACGTGAGGCCAACTATTTCCTGGTGACTGCGGCAGGATTCTTAACTTTGATCATTTTTTGTTCGCTGTTGTTTTACGTTTCCACCGTATCTCAGTTAATGAACACGGAATTAACAAAATCGTGTAAAATCCTGCTCCTTCAAGCTCTACTCACGGCACTAGCAATTTATATCGTGAACAGTACAGCAGCAAGTTTAAAACGAAAACTCGGACTCCcgttagtaaaccagcttggCAGTTGGACTATTCTTGTGTCATCCTTTCTGTTACCACTGATCAACTCGAGTAATTTAACGATACGACTGTCGAGTATAGCTATGGCGTTTTCCTCATTGTATCTGTTGATGAGCACTGCCTACGAAAGCCTGTTTTTGCTAGTTCTGTCGCTGCTTATGGGTGCATGGCTTTTGTCTGAACACAAACTCTCTGGCAAAACTCTCGACGCGCTGTTAGAAACGCAACTAAGCAACGCCAGCTCCACGACCACCTATCAGCCAGCTTGGAAGGCCCTTACGAGAGGCATGGACGCTCCTGTGATGAGAAAACTCACTTTAGAGGACCTTCGCTGCGcttattttttcgttttcttcatcGTAGTGGCCTTCTTTGGAACAGGAAACATTGCTAGTATAAATAGCTTTGACCCTGCGTCCGTTTACTGCTTCTTGACTGTATTCTCGCCCTTTGTTATGGGCAGTTTACTACTCTGTAAAGTTCTCATTCCGTTTGTGATTGTAACATGCGCATTCGACGCAATACACGTAGTGCTCTCGATCCCTGTTCAAAGTCTAGTGTTAGTAGTGCTAGTGATGACGGATTTAATGGGActgcatttctttttccttgtgcaGGATAGCGGCAGTTGGCTGGATATTGGAACAAGTATCAGTCACTTTGTCATCATGATGGCTTTTATTATATTCTTGCTTCCAATATTCGGTCTGGCTAGGCTCTTTACAGGGGCTTCCCTACCGTTCAGGACGAGCAAGAAAATAGCTTAAAAGGCAGAACACACGAGGCCATAATATGCTGAAGCAGGTTCCCCGCGCCAAATCGCTCCCCCCTCCCTTTTTTCGTTCAACCCGTAAGTACCCGCAAAACTCGTCGCTGCGACTTGTTTTAAGGAAAGAATGCTGTTAAGGAGATAcagatttttatgaaaaaaattctatGTCACACGAAGTGAATTGTCACCGAATGTGTTCTGACCTGAAGTACGGTAGGCTCAAGCCGTAAGGAAACTTTAGGATATGACTGAGTATCgtgaaataatgaaatagtAACTTATAACTGCAGAAACAAAAGGAACATTGGATAGTCAAAAGTTGGAACAGGTGCATAAAGGTGGTGAAATTTCAAACGCATTGTCTTTGggaaatttgaaatacaaaggaccaaaacttttcaagcttacacatttttcttgaaaattttatccTTAACGCTTGAAAATCAAGATAGGTATCTGCTCTGTTAAACAATGAGattttcaataaacaaatattttcaacgAGGCCCTCTAGTAAAATTAAGAAACAACTATCGATGCAACATAATGACgttaagtttatttcaaagtttttcagtCCTTAACGACGCTTAAAATGAGTAACAACCACTTTGCTCTTAATTCCAGCAGATACATCGCACTTTCTGCGTAATTTTTAGCTGTTAGGATTGCAATCCTGACTTCAAGTAGTTAACTCTTCC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04987 all species →	PigN	Phosphatidylinositolglycan class N (PIG-N)	Family	Interproscan
PF01663 all species →	Phosphodiest	Type I phosphodiesterase / nucleotide pyrophosphatase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017852 all species →	Domain	GPI ethanolamine phosphate transferase 1, C-terminal	Interproscan
IPR037671 all species →	Domain	GPI ethanolamine phosphate transferase 1, N-terminal	Interproscan
IPR007070 all species →	Family	GPI ethanolamine phosphate transferase 1	Interproscan
IPR017850 all species →	Homologous_superfamily	Alkaline-phosphatase-like, core domain superfamily	Interproscan
IPR002591 all species →	Family	Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12250 all species →	PHOSPHATIDYLINOSITOL GLYCAN, CLASS N	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005789 all species →	Cellular Component	endoplasmic reticulum membrane	Interproscan
GO:0006506 all species →	Biological Process	GPI anchor biosynthetic process	Interproscan
GO:0016740 all species →	Molecular Function	transferase activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0051377 all species →	Molecular Function	mannose-ethanolamine phosphotransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05285	PIGN; GPI ethanolamine phosphate transferase 1	EC:2.7.-.-	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis	ko00563	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.