Gene detail

Detailed information of PFX32708.1 in Stylophora pistillata

Genomic Location: Spis.scaffold19:279642...286623
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

AWC38_SpisGene2369

ATGGCCTGGTATTACGGTGTTAACAACTCGGAATTGTACGGATCGAATTTCTCCACAGTGCTAGCGGATGCACCACCTCCTTTGGATGACACTTTCGATGAAGACGATAACGAAATCGTTTTTCCGAATGAAGTAAATAAATCAAAAAAGTACAGCGGGAATTCGCGCAATGAAAAATTCAGTGATAAATCAAAGTTCGATGGTGACCTTACAAATGGTATGAACAAGCCAGGAAAGCCAGATCATGTCGAAGAGGATTCCGATTTTGGTGACTTTGCTGGTTTTGCCGATTTCGGGTCCGCTTTTGAACAGGAAAGTAATGGAGAATCACAAAACTGGTTCGCAAGTAATGAAAACAGCATCAAAACAGCAAGTGGTGAACCAGCCAATGCTGACGAATTCGCCGATTTTGCAGCATTTGGGGACGATAAGAGCAGTATGAATCAAGAAAAAATTACCAATGGGGGTCTTAATCAAGGTGATTCAATGGCTTATGTCTTGAACAATCATGACAAAAATGAAGCTGGAAATGAAGGACTGCCAAGTAATGGTTCTTATGACATTGAATCTGATGATGAATTTGGAGAATTTGCAAGTACAGACTTACCTACAGTGAAGTCTGAACAGACCTCTTTAGAAAGTGACAGCAAGAGTCATGAACTTCAGACAGACATTGAAATGAGTTCTCTGTTTCAAGGAAAAACTTGCATGGAAGACAAAGTGAAATCTGATGGAGTCAGTGTAGTCAGTGAAGAAACGGGAGGTGTCATGTCAGACAGTGATGTTGATGATGTAAAAACAGTCAGCCATTTACTAGAAATCTCGACTCCAGAATTCTCTAACAAGTTTAATAAGGAAACTAATCATGTTCAAAAAGAAATATCATCATCCACACAGGAAGGAAAAGTTTTTCATCCTGTCATAAAGAATGGTGAATCAGTTCAGTTCAAAAGTTTATCACCAGCTGAGACACAAGAAAACATTGAAGAGGAAGAAAAGGCAGACAGTAGTTTATCCAGAAAATCTGATAAGGTAAACAATATCAAGAATAACATAAGTGATTCTAGTAAAGTTGAACATGGTTCAGGTGGAGAAGAAGGACACGAAGATAATAATTCAGATGAGGATGGATTTGGTGAGTTTTCTGACTTCTCACGTTTTTCTATGAGACCACCATCATTAGGTGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGAGAAGCAATGTAATGCACAACTTGATTCACCTGGAGTCTCCAAGCCGGCTGGTAGTCAAGAAGGCACAGATTCATCATTTATAAAAGGTGTCTCAGTGCAAGATGAAAATTGTGTTATTGATGATGAGGATGACTTTGGCGATTTTGGTTCATTTAATGAAAAATACGATCAGAGCTCTATAGGTGACACAGATTTTCCTGTGGAGGATTCTAAACAAAAGTATTCACCCAATGACAATGGTGTGGCTGAAGTTGATGATGACTTTGGAAATGTCCACTCCTCAAATTCTGAAGGGAGAACTTTGCCATCCAACAATGAAGACAACAATGATTTTGGTGTAACTGATTCAAGTACAAAAGATTCCCAGAAAGAAACCAATGATGATGATGACTTTGGGGAATTTGGTTTTTCTGATTCTGCAGGGAAATTGTTTCCTGCTGTAGCTCAAATCAAGGACAAATTTGGTGACTTTGATCATTTTGATTCAAATGGGGAAGAGCTTAAAAAAGACAAAGATGGTAACAATCACTTTTCAGAGTTTGGCTCTCCTACTTTGGAAGGAAAAAGTTTACCAGCCGAAGATCAAGATGATGATTTTGATGATTTTGGTTCATTTCGATCGAGTGCTGGAGATTCCAAGAAAGCTGATGACAACTGCACAGATGAATTTGGAGATTTTGGTAATTTTGAGAGCAGTAACTCCAAAAACTCCCAAAAGTGTGAGGGAGATGATGACTTTGGGGACTTCAGCAATTTTGAGTCAAATACGAAAGTTACCCAGGAAGATGATTCCAACTACAACAGCTTTGGAGACTTTGGTGCATTTGATTCCAATGAAAAGGATTCACGAGAAAAGAATGAAAGTGAATTTGGAAGCTTTGGTAGTTTTGAATTCAAAGTGATAGATGCACCAAAAGAGAATGACAAGAACTTAAACAATGTTGTCAAGTCTACTGACAATACTGAAGATTTTAGAACTTCTGATGGGCAGCTAAATGTAAAAATGAAGAAAAATGCTAACGAACCCAACAAAAATGATGTTTTTGGTGTTTTTAATGGTGAAAGTAAAGAAGATGATAGTAGTTTTGCCTCATTCTCTGCCTCAAAGACTCTTACAGAATCCCCCAGGGAGGATATTGTCCCAAAAGAAAAGTCAGGAGGAAGTCTTTATTTTGTTCCTGGTGATAGTGTTATCATAAGGCAAGTGGGAGATCCAGTTTCACTGTGCTTTTCCTCAGAAGTGAGGCATATTTCACAATTTCAATGTGATGTTCTGTCTATGAAAGTCAAGAAAGGTTTTCAGAGTGAATTGGGATTGTGGCACCAACTAGAGCGTACTGATAAGGAAGGCAGAATACCCTTTCATTGGTTGAATTCCTTCAGCCAACACAAAAAATTTTTGTCCTTGAGGATACGACCAGACAGACCTCCTCCAATTCAGGGTGGTTCCATGCTGAAACCCACAGTCTCATCTCAGTTTCCACCTTTTGGAGGTGGACTGGCTGGATCAGTGTTAATGCCTGCACCTCTTGGCAAATTACCAAATTCTTCATCTGGACTGGGTTTCTTGGAACCTGTGAAAGGATCACACCTTCCAGTCCATAGTATTACACAGGATAAAACTGCAGGCCATCATTCAGTTCACCCAGAAATGGGTCTCCCAGATCTAAGTGTAAGTTTAGTGCAAATTTTGTCTTTATTGTCAGAAAAGGCTCCAAAGTTCAAGGATACCGTATCAGATTCTACATGTGAATCATCTTCCCTTGACCTGGATATCTTTGCCCCCAGCATGACGCAAGCCTCAGATGCAAAGTCAGACTCCAAAGGCTTGTACGAGACAGACCTGTTGGGTCTGGATATTTTCTCATCATCAGTGGAACCTCAAAAATTGGACAGCCCTAAGCTGCAAAAACCATCAGATACAAATAGAGTGTGGCAACATGGAGGAGTCACCATACCTCTCACATCACAACAACAAAGAGCACCACTGAGTGCTGCTGCCAAGGCTGTTTTCAATGATCTTGAAGATTTAAGTTTCATGGGTTCATCAGTTCTTATGTTTCCCTTGAAGGCTGAATAA

Transcript

rna-Spis2369_mrna

CAAAATGGCGCTCGATCACCCGGTAGTAGTCGGAGGATGTATTAATTTGTGACATAGCTTAAACACTATTCAACGACAAGAACAACTACTTTCAGAAATCCTCGATCAAGCAAATTTACCACAGGGAGTAGAAGGGAACATTTCAGCTCGTAGTACGCTGACATTTGCACCTCTTCTTCCAAGTTTCTTCATCAATTTATCACAGTTGCATCTCCTTTCAATGATTGCGCTGTAGGTTGCATTGGCGAACAATATTGTGGATTCACTGGTAAAAATTATGTGAATTTTTCACGAGGTAGtttgtttagaatttttttacaagaaagaaaGATAATGCCAAGACACTGAGAGCCGTTTCTTTCGGGACTACAAGAAATGGCCTGGTATTACGGTGTTAACAACTCGGAATTGTACGGATCGAATTTCTCCACAGTGCTAGCGGATGCACCACCTCCTTTGGATGACACTTTCGATGAAGACGATAACGAAATCGTTTTTCCGAATGAagtaaataaatcaaaaaagTACAGCGGGAATTCGCGCAATGAAAAATTCAGTGATAAATCAAAGTTCGATGGTGACCTTACAAATGGTATGAACAAGCCAGGAAAGCCAGATCATGTCGAAGAGGATTCCGATTTTGGTGACTTTGCTGGTTTTGCCGATTTCGGGTCCGCTTTTGAACAGGAAAGTAATGGAGAATCACAAAACTGGTTCGCAAGTAATGAAAACAGCATCAAAACAGCAAGTGGTGAACCAGCCAATGCTGACGAATTCGCCGATTTTGCAGCATTTGGGGACGATAAGAGCAGTAtgaatcaagaaaaaattaccaATGGGGGTCTTAATCAAGGTGATTCAATGGCTTATGTCTTGAACAATCATGACAAAAATGAAGCTGGAAATGAAGGACTGCCAAGTAATGGTTCTTATGACATTGAATCTGATGAtgaatttggagaatttgcAAGTACAGACTTACCTACAGTGAAGTCTGAACAGACCTCTTTAGAAAGTGACAGCAAGAGTCATGAACTTCAGACAGACATTGAAATGAGTTCTCTGTTTCAAGGAAAAACTTGCATGGAAGACAAAGTGAAATCTGATGGAGTCAGTGTAGTCAGTGAAGAAACGGGAGGTGTCATGTCAGACAGTGATGTTGATGATGTAAAAACAGTCAGCCATTTACTAGAAATCTCGACTCCAGAATTCTCTAACAAGTTTAATAAGGAAACTAATcatgttcaaaaagaaatatCATCATCCACACAGgaaggaaaagtttttcatcCTGTCATAAAGAATGGTGAATCAGTTCAGTTCAAAAGTTTATCACCAGCTGAGacacaagaaaacattgaagaggaagaaaaggCAGACAGTAGTTTATCCAGAAAATCTGATAAGGTAAACAATATCAAGAATAACATAAGTGATTCTAGTAAAGTTGAACATGGTTCAGGTGGAGAAGAAGGACACGAAGATAATAATTCAGATGAGGATGGATTTGGTGAGTTTTCTGACTTCTCACGTTTTTCTATGAGACCACCATCATtaggtgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgagaagCAATGTAATGCACAACTTGATTCACCTGGAGTCTCCAAGCCGGCTGGTAGTCAAGAAGGCACAGATTCATCATTTATAAAAGGTGTCTCAGTGCAAGATGAAAATTGTGTTATTGATGATGAGGATGACTTTGGCGATTTTGGttcatttaatgaaaaatacGATCAGAGCTCTATAGGTGACACAGATTTTCCTGTGGAGGATTCTAAACAAAAGTATTCACCCAATGACAATGGTGTGGCTGAAGTTGATGATGACTTTGGAAATGTCCACTCCTCAAATTCTGAAGGGAGAACTTTGCCATCCAACAATGAAGACAACAATGATTTTGGTGTAACTGATTCAAGTACAAAAGATTCCCAGAAAGAAaccaatgatgatgatgactttggGGAATTTGGTTTTTCTGATTCTGCAGGGAAATTGTTTCCTGCTGTAGCTCAAATCAAGGACAAATTTGGTGACTTTGATCATTTTGATTCAAATGGGGAAGAGcttaaaaaagacaaagatgGTAACAATCACTTTTCAGAGTTTGGCTCTCCTACTTTGGAAGGAAAAAGTTTACCAGCCGAAGATCAAGATGATGATTTTGATGATTTTGGTTCATTTCGATCGAGTGCTGGAGATTCCAAGAAAGCTGATGACAACTGCACAGATGAATTTGGAGATTTTGGTAATTTTGAGAGCAGTAACTCCAAAAACTCCCAAAAGTGTGAGGGAGATGATGACTTTGGGGACTTCAGCAATTTTGAGTCAAATACGAAAGTTACCCAGGAAGATGATTCCAACTACAACAGCTTTGGAGACTTTGGTGCATTTGATTCCAATGAAAAGGATTCACGAGAAAAGAATGAAAGTGAATTTGGAAGCTTTGGTAGTTTTGAATTCAAAGTGATAGATGCACCAAAAGAGAATGACAAGAACTTAAACAATGTTGTCAAGTCTACTGACAATACTGAAGATTTTAGAACTTCTGATGGGCAGCTAAAtgtaaaaatgaagaaaaatgctAACGAACCCAACAAAAATgatgtttttggtgtttttaatGGTGAAAGTAAAGAAGATGATAGTAGTTTTGCCTCATTCTCTGCCTCAAAGACTCTTACAGAATCCCCCAGGGAGGATATTGTCCCAAAAGAAAAGTCAGGAGGAAGTCTTTATTTTGTTCCTGGTGATAGTGTTATCATAAGGCAAGTGGGAGATCCAGTTTCACTGTGCTTTTCCTCAGAAGTGAGGCATATTTCACAATTTCAATGTGATGTTCTGTCTATGAAAGTCAAGAAAGGTTTTCAGAGTGAATTGGGATTGTGGCACCAACTAGAGCGTACTGATAAGGAAGGCAGAATACCCTTTCATTGGTTGAATTCCTTCAGCCAACACAAAAAATTTTTGTCCTTGAGGATACGACCAGACAGACCTCCTCCAATTCAGGGTGGTTCCATGCTGAAACCCACAGTCTCATCTCAGTTTCCACCTTTTGGAGGTGGACTGGCTGGATCAGTGTTAATGCCTGCACCTCTTGGCAAATTACCAAATTCTTCATCTGGACTGGGTTTCTTGGAACCTGTGAAAGGATCACACCTTCCAGTCCATAGTATTACACAGGATAAAACTGCAGGCCATCATTCAGTTCACCCAGAAATGGGTCTCCCAGATCTAAGTGTAAGTTTAGTGCAAATTTTGTCTTTATTGTCAGAAAAGGCTCCAAAGTTCAAGGATACCGTATCAGATTCTACATGTGAATCATCTTCCCTTGACCTGGATATCTTTGCCCCCAGCATGACGCAAGCCTCAGATGCAAAGTCAGACTCCAAAGGCTTGTACGAGACAGACCTGTTGGGTCTGGATATTTTCTCATCATCAGTGGAACCTCAAAAATTGGACAGCCCTAAGCTGCAAAAACCATCAGATACAAATAGAGTGTGGCAACATGGAGGAGTCACCATACCTCTCACATCACAACAACAAAGAGCACCACTGAGTGCTGCTGCCAAGGCTGTTTTCAATGATCTTGAAGATTTAAGTTTCATGGGTTCATCAGTTCTTATGTTTCCCTTGAAGGCTGAATAATTTACCAAATAATTATGGAACATATGATATTCATAcgaatttgaatttgaagacATTATTTTATAATCAAATTATAGGAAATGTAGAGCCTTATGCATGTTATCTATGTCTCCAGGAGAAGGATGAAGTGATTTTATGTTATGCTCTAACATTGGAAAATTAGAGGTTAAAAGCCAAAGTCTTAGGTTTAGAATCCTGACAGAAATTTTAGCAATTCCTAATTTTCCCTCTCTATTTTGCTGGGTAGTCTTTTGAGGAGAAATTGCTCGGCTTGATTACAGTATTTTCCAGATTATAAGGGGCagcttttttcagtaaaaacCTGTCTGCCATAATTGAATATTTTCCGAAAAAGAAAGAAGGGGTATTTGGATTTTTATACTGTCAAAGGGTAAGAATGATGAAGTAGAGGAAATGGGTTTGATGTCAGTGTGAAAATTGTTTGTAACTTATAGATGTAGGTTTACCTTCActtaaaaattacagaaattcTTTATTAAACCAAACAAATTGTAGGAAATTTGGAGGTGAAGTTGGCATTAGGGCAGATGTTCAtgcatctgtttttttttttttttttttt

Protein

Pfam domain

No Pfam domain signature was detected for PFX32708.1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR046359 all species →	Family	Aftiphilin-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16156 all species →	AFTIPHILIN A-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0030121 all species →	Cellular Component	AP-1 adaptor complex	Interproscan
GO:0030276 all species →	Molecular Function	clathrin binding	Interproscan
GO:0032588 all species →	Cellular Component	trans-Golgi network membrane	Interproscan
GO:0046907 all species →	Biological Process	intracellular transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25218	AFTPH; aftiphilin	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.