Gene detail

Detailed information of PFX32770.1 in Stylophora pistillata

Genomic Location: Spis.scaffold19:1289592...1310051
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

WDR27

ATGGCGGCAAGTCAGGAAGGTTTGCTTCGTGTTTCTTCTTCTCCGGGACAATTGCAGATGACCTGTACAGGCGAATTTGTTGCATTGCCTTTGACGAAGACTATTGTGGGAGTTTGGTGGCTTGGAGATATCTCGAGGAAGCCTTTACAGCTCTCTGCCCACAGTGGAATAGTAAGCACCACTTGTTTTGGACGAAAGGACAGACCCCTTCTCCTCTGCACAGCATCAGAAGACTTCATATACATCTGGAACATTGACAAGCTTTTGCTTATTGACAATATAACTAGTGATCACAGTAGTGGGATAGCAGTTGGTAAAGATTTGGGACATGTCCAACATCTTAGCTTCAGCATGTCTGACAGGTTGATAACAGCATGTATAGAGAAAGAAATATGGGTCATTAACATCCAGACTAGCAAACTGGACACTTTGTTGGAGGGCCATACCAGCATTGTAACATGTGCAGAGTTTTCTCCTAAAAACGAGTCAATTGTTGTGTCGATAAGTGAAGACAGAACTTTTAAGGTATGGAACATTGAGCAATCATGTTTGGTGTACCAGTCAGCCATTTTGTCAGCTCATCCATTCCTTTCACTTGCTTTGGATTCTGTTCAAGAGCAGATGGTAATTGGTTCTGCTGATGGGAAGGTTCACTTGTATGACCTAGCTTACAATGGTCGTTACCGATGCCTTTATGAACTGGATGTCAATAAGTTGATGCAAAAACATTGGAGGCAGAAAGAAACTGTTAGGGAAACACCAGAGAATGGGCCATCCATAATAAACAGTCAGCGTTCCTGGCAAAGCAAGAGCACTCCAGATGATGAAAATGAAGCTGTTCTGGAACCAGGAATGGCTGTACTTGCTGTCAGCTTCATAACAAACCCTCATCAACAAAGTGCTGCACACAGAGATGCAGGAACACACAGGATCCTTTTTGGTTCACACAGTGGATCAGCCATTAATAGTGAGTTGGACGATGTTCAATATCACATTTCGACTCCAGGTTCATTTGCGTTTGCGGAGAGGCCTGATGGCAATATCGCCTGTTTGATCGGCAGTTTGTTTCAAAATACGGTGAACGTGGTTAACATCAAGAAGCCGAATACTAACACGGGGACAGAGAATCCCCACGAGGACTTGTCTCAAAGGCTGTCCCAGTCGGTAGATATAAGTTCCCATGGTGACCAGGAGGAAGGAACGTCACCAATAAGGGGTGCCGAGATGGCAACAAACACCGCCGTCACTGTCCTATCCAGTGCACCATTGTGTAGTAATTCACCTTTAAAAGCAGAACTTGTACCAAAAACAGCAACCAAACAGAGGCAGAAACAAAAACCTTCTACCAAAGGTATGAAAACAGAAGTTTTTGATCAGCCTCTAACATTCCACTCAAAAGTGAAATCATCTGGCTATTCATCATCAGCGGCAAGATCCAAAATGTTTTCACCGAGCACAAGCGCTTCAAAGCCAAAAAAAGCTTCGGCATTCCCGTTGAAGAAAGCGGCCTCTACCTCTCTCTGCTCTGGGGCGTCATTAAAGGAGTACCCTATGGATAGCGAAGCACCGACCGACTTGCAGCATAAACTTTCGCATACTGAGAAACCAGCCCCCATCAACTGCATCGTGTTTTCAGACGATGGAAAGCACATCGCTTGTGGTTTGGCTAATAAAAGTGTTCATATGATGAGACCTCCACCCTCAAGCAAGGAGACAGTGTTTACAGGACATGACGGATCAGTGACCAGTGTTAGCTTCAGTCATGACAGTCGCTGGCTTATGACGTCATCAAGTGACAAGACTGTCAAACTGTGGAGCTCCGCCCACTCGGATCCTGGGATGACATTTTCATCTGTCAATCATAACTTTGCATCAGAACTTACTAACTCTACAAATGTTAAGGATAATCCTCCGTTTTCCAAGGAAATAACTCAAGCTAAATTTTACTATATTGACAAATTTGTCCTTCTGGCCAGTGGCAACGGCCTTCACATGTACAAGTACCACATTGGTACCGGGCAAAAAGATGACGTTAAAAGATATCAAACAAACAATAAATACAAGTTGGTGAAAATATTTCAGCAGGAAAGGGCTCAACAAATTACCTGTTTCTCTGCCATCAACGGATTTCACTCCTATATAGTGTTGTGTTGTGGTTCCAACAAGTCAATCCAGGTTTTTGATATGAACGCGGCTCGCACTGTCCGAGTGGTCATGGATGCTCACACTCGCCCCGTACACACGATATGTCAGAATGAGGGTTCCATGTTTGTCTCGCACCCTCCAAACGCTTACGACCTGTTCTTGACAGCTGCGGTTACTGATGGAATCAAATTATGGGACTTGCGCACTAACAGGTGCGTTCGCCGGTATGATGGCCACGTGAACAGATCACAGCCAATCGGGGTGGCTATCAGTCCGTGTGCAAGATTCATTGCGACTGGTTCTGAGGACAGATCGGCGTACCTGTACGACATTCGAGGGAACACATTTTGTCATCGGCTCACTGGGCATACGGACGTGGTGTCGGAAGTAGCTTTTCATCCTGCGCAACCTCAGGTGTTAAGGCCGGGAGCTCTCTTCTCTAAGATATGTGATCGACACTTTTTCTTGTTACGGCTTCCCTGGACGGACGGTTACGGTTTTACTCCGGATCACGGAAACAGGTTTGAGGTAAGTGTGGCAATGTTTATGGGTAACGAGCGTAGGATGATAACAGAACGTGTACACGGAGTTAAACGCAAGCTTACCGAAGTTGACGGCGATGATGAGGTGCATGGCCGCAGTCTTCAACGACAAACAGTGTTCAATATTTCGATCTGCAAGTTGCAGAAAAGATTCACACGGCCAGAGCCCATCCTCTTCAAAACCGTTCTTATCTCTAATACGCTTCGTCTCATCGAAGAAGACATCAGAGAAGAGCGGAGGAGTTTAGAAACAAATGATTTGAACGGACCTAGCGACGAGAAAACGTTCGCTCGAGTAGTCAACATGCACGAACCAACGAATCGCCCTGGTCTAAATATCGGCACGCGATCACGCGACGCCTGTGAAACTTCGAAAAGTTCTCTAACTTTTGAACAAGAACTAAATATTCTGGGCGACAAAATGGTTAAAGAACTTGAGCTGGACAGGGAAAATTCTAAACTACTCGAAGAAAAATCAGAACTACTCACTCAAAACCCTTTAACGCGCTCTGCTGCCGATTCGAACAACAATACCCCGGGGTTCGAGGAACGTGAGAGAGCGGTCACCTCCAACTCGGAAGAAATCATTCGAGAATTCACTTGCGGTAGTCTACTGGGACTGGAATTAACCGAAGAACTGGAGTTTAAGGACGTTGACGTTTCGCTCTATGACTTCGACGTTCCAAACGGATCGTTCCCGATTGATTTTGACGAGTTTTGCAGCGTGTGGAACCTTGGATCAACCAGTGTGGCAGCGCGGAGTTTGCCCAGTAGATGTAGTGACAGCGTTAAGCTTGAGCGAGCAAACGAACATAATTTTGACGATCTAGACCAAGTTATGCAAATTTTAGTGGGATCTTAA

Transcript

rna-Spis2437_mrna

atggcggcaaGTCAGGAAGGTTTGCTTCGTGTTTCTTCTTCTCCGGGACAATTGCAGATGACCTGTACAGGCGAATTTGTTGCATTGCCTTTGACGAAGACTATTGTGGGAGTTTGGTGGCTTGGAGATATCTCGAGGAAGcCTTTACAGCTCTCTGCCCACAGTGGAATAGTAAGCACCACTTGTTTTGGACGAAAGGACAGACCCCTTCTCCTCTGCACAGCATCAGAAGACTTCATATACATCTGGAACATTGACAAGCTTTTGCTTATTGACAATATAACTAGTGATCACAGTAGTGGGATAGCAGTTGGTAAAGATTTGGGACATGTCCAACATCTTAGCTTCAGCATGTCTGACAGGTTGATAACAGCATGTATAGAGAAAGAAATATGGGTCATTAACATCCAGaCTAGCAAACTGGACACTTTGTTGGAGGGCCATACCAGCATTGTAACATGTGCAGAGTTTTCTCCTAAAAACGAGTCAATTGTTGTGTCGATAAGTGAAGACAGAACTTTTAAGGTATGGAACATTGAGCAATCATGTTTGGTGTACCAGTCAGCCATTTTGTCAGCTCATCCATTCCTTTCACTTGCTTTGGATTCTGTTCAAGAGCAGATGGTAATTGGTTCTGCTGATGGGAAGgTTCACTTGTATGACCTAGCTTACAATGGTCGTTACCGATGCCTTTATGAACTGGATGTCAATAAGTTGATGCAAAAACATTGGAGGcagaaagaaactgttagggaaACACCAGAGAATGGGCCATCCATAATAAACAGTCAGCGTTCCTGGCAAAGCAAGAGCACTCcagatgatgaaaatgaagctGTTCTGGAACCAGGAATGGCTGTACTTGCTGTCAGCTTCATAACAAACCCTCATCAACAAAGTGCTGCACACAGAGATGCAGGAACACACAGGATCCTTTTTGGTTCACACAGTGGATCAGCCATTAATAGTGAGTTGGACGATGTTCAATATCACATTTCGACTCCAGGTTCATTTGCGTTTGCGGAGAGGCCTGATGGCAATaTCGCCTGTTTGATCGGCAGTTTGTTTCAAAATACGGTGAACGTGGTTAACATCAAGAAGCCGAATACTAACACGGGGACAGAGAATCCCCACGAGGACTTGTCTCAAAGGCTGTCCCAGTCGGTAGATATAAGTTCCCATGGTGACCAGGAGGAAGGAACGTCACCAATAAGGGGTGCCGAGATGGCAACAAACACCGCCGTCACTGTCCTATCCAGTGCACCATTGTGTAGTAATTCACCTTTAAAAGCAGAACTTGTACCAAAAACAGCAACCAAACAGAGGCAGAAACAAAAACCTTCTACCAAAGgtatgaAAACAGAAGTTTTTGATCAGCCTCTAACATTCCACTCAAAAGTGAAATCATCTGGCTATTCATCATCAGCGGCAAGatCCAAAATGTTTTCACCGAGCACAAGCGCTTCAAAGCCAAAAAAAGCTTCGGCATTCCCGTTGAAGAAAGCGGCCTCTACCTCTCTCTGCTCTGGGGCGTCATTAAAGGAGTACCCTATGGATAGCGAAGCACCGACCGACTTGCAGCATAAACTTTCGCATACTGAGAAACCAGCCCCCATCAACTGCATCGTGTTTTCAGACGATGGAAAGCACATCGCTTGTGGTTTGGCTAATAAAAGTGTTCATATGATGAGACCTCCACCCTCAAGCAAGGAGACAGTGTTTACAGGACATGACGGATCAGTGACCAGTGTTAGCTTCAGTCATGACAGTCGCTGGCTTATGACGTCATCAAGTGACAAGACTGTCAAACTGTGGAGCTCCGCCCACTCGGATCCTGGGATGACATTTTCATCTGTCAATCATAACTTTGCATCAGAACTTACTAACTCTACAAATGTTAAGGATAATCCTCCGTTTTCCAAGGAAATAACTCAAGCTAAATTTTACTATATTGACAAATTTGTCCTTCTGGCCAGTGGCAACGGCCTTCACATGTACAAGTACCACATTGGTACCGGGCAAAAAGATGACGTTAAAAGatatcaaacaaacaataaatacaAGTTGGTGAAAATATTTCAGCAGGAAAGGGCTCAACAAATTACCTGTTTCTCTGCCATCAACGGATTTCACTCCTATATAGTGTTGTGTTGTGGTTCCAACAAGTCAATCCAGGTTTTTGATATGAACGCGGCTCGCACTGTCCGAGTGGTCATGGATGCTCACACTCGCCCCGTACACACGATATGTCAGAATGAGGGTTCCATGTTTGTCTCGCACCCTCCAAACGCTTACGACCTGTTCTTGACAGCTGCGGTTACTGATGGAATCAAATTATGGGACTTGCGCACTAACAGGTGCGTTCGCCGGTATGATGGCCACGTGAACAGATCACAGCCAATCGGGGTGGCTATCAGTCCGTGTGCAAGATTCATTGCGACTGGTTCTGAGGACAGATCGgcgTACCTGTACGACATTCGAGGGAACACATTTTGTCATCGGCTCACTGGGCATACGGACGTGGTGTCGGAAGTAGCTTTTCATCCTGCGCAACCTCAGGTGTTAAGGCCGGGAGCTCTCTTCTCTAAGATATGTGATCGACACTTTTTCTTGTTACGGCTTCCCTGGACGGACGGTTACGGTTTTACTCCGGATCACGGAAACAGGTTTGAGGTAAGTGTGGCAATGTTTATGGGTAACGAGCGTAGgATGATAACAGAACGTGTACACGGAGTTAAACGCAAGCTTACCGAAGTTGACGGCGATGATGAGGTGCATGGCCGCAGTCTTCAACGACAAACAGTGTTCAATATTTCGATCTGCAAGTTGCAGAAAAGATTCACACGGCCAGAGCCCATCCTCTTCAAAACCGTTCTTATCTCTAATACGCTTCGTCTCATCGAAGAAGACATCAGAGAAGAGCGGAGGAGTTTAGAAACAAATGATTTGAACGGACCTAGCGACGAGAAAACGTTCGCTCGAGTAGTCAACATGCACGAACCAACGAATCGCCCTGGTCTAAATATCGGCACGCGATCACGCGACGCCTGTGAAACTTCGAAAAGTTCTCTAACTTTTGAACAAGAACTAAATATTCTGGGCGACAAAATGGTTAAAGAACTTGAGCTGGACAGGGAAAATTCTAAACTACTCGAAGAAAAATCAGAACTACTCACTCAAAACCCTTTAACGCGCTCTGCTGCCGATTCGAACAACAATACCCCGGGGTTCGAGGAACGTGAGAGAGCGGTCACCTCCAACTCGGAAGAAATCATTCGAGAATTCACTTGCGGTAGTCTACTGGGACTGGAATTAACCGAAGAACTGGAGTTTAAGGACGTTGACGTTTCGCTCTATGACTTCGACGTTCCAAACGGATCGTTCCCGATTGATTTTGACGAGTTTTGCAGCGTGTGGAACCTTGGATCAACCAGTGTGGCAGCGCGGAGTTTGCCCAGTAGATGTAGTGACAGCGTTAAGCTTGAGCGAGCAAACGAACATAATTTTGACGATCTAGACCAAGTTATGCAAATTTTAGTGGGATCTTAA

Protein

Gene family

Family type	Membership / link
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06031 all species →	SERTA	SERTA motif	Motif	Interproscan
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009263 all species →	Domain	SERTA domain	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR011047 all species →	Homologous_superfamily	Quinoprotein alcohol dehydrogenase-like superfamily	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR042411 all species →	Family	WD repeat-containing protein 27	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44525 all species →	WD REPEAT-CONTAINING PROTEIN 27	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K21762	WDR62; WD repeat-containing protein 62	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.