Gene detail

Detailed information of PFX32773.1 in Stylophora pistillata

Genomic Location: Spis.scaffold19:765035...774099
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-Spis2401_mrna

TGGAACGATTATGCGTTGCAACGGTTTCCGTGTAGCAAAagcatttttttcccttctgaTTACGATCTAAACTGAATgggaaattttccttttgtggATAGGACCATATATGTTTTTTGGATGAGTTTTCGTGTGGTTTAAAATGGATCAAAACGAATTTTCCGTACCAAGACGCGATGCATGTGGTCGACATAGAGCAACGCAGAGGAGCAAGAGTATGACTCTTCGTAGAAGAAACTTTTCTAATCCACCTGAAGGGAGATCAAAATCCCTCCAACTCAACATAAAAATGATGAACTTAAACAAATTCCGGAGGCGAAAAGGGCCGGCTTGGTCAAGGGGAGAACAGAAAAAAGCTGGGGTTTCAAATTCAGGAAGCAGTAAAAGTTGTATGGTGGAAACAGCTGATTCAAGTAAACCTCAGAACTCTGAAGTTCGAGaaattccAGGGTTTTATTACGATGCAGAGAAGAAGCGCTATTTTAAAATCACCAAAGATCATCCAGTTCCaggaaaaaattttgtgttatGCCAGTGTGGAGGATATAAGTACATCTCATccaaaaatcagagaaaaataataCCTGGTGATATTAAGGTTACCAAAAAACCATCAAGAATTTCTATAGTAAATAGCCTCCATGATAGGGAGTACACTCGTTGCTCACAAACAAGCAGTAGGAATCTATTTGAAAAGCTTActtgtctgttaaaaataaggCAAAGACTAAAGTTGGATCCTTGTGTAGATCACTACTTAGAACTGGATCAGTTTGCAGTATCACGGATAGAGCCTGATGCTTGTCATGAGAGGATACTAACACTGTATGAGACCAAACCCACAGGGAACCAAGCAGTACAATTTCATGAtttaaaaaaggacaaaaacaataattttgaagTAGTGCACAAAATGGCAATGATGAAAAACCAGAAAATAACAGGTCTTCTTTGGAGTCCACATGAACAAACAAAGAACACATACATATTATCTTTACTTGGTCATGGAAACATGTCTGGTGAAACCATGGTTTTTACAGTGGAAGGTGCTTCGCAAcGAATAGTTGGTAGAACTTCTGTACAAGGGAACTCAGTGTGGACTAATGCATGGAACAGAAACCCTCTCTATAGTAATATAATCAGTATTGGAGCAAGTAAGGTAGCTTTAACATTTGATGTGTCCACCAAGAGACGTGTAATACATACCAAGTGTGAAAGTGCAGTATTTGCTCAGGAATTTTCATGGAGTcatCCTCTTCTTTACAATGGCTCACGCGATGGCTGCATACGTACATGTGATGTGCGTCTGATTGGTGCCAACTGGCCAGTAATGTGTCTAAACCAAGGAAAGCTGGCATCAATCACATGCCTACGGGTTTTGCATGATGAGAACTACTTATTGGCCAGTGGTCTAGATGGATCGCTGAAGTTGTGGGACATAAGGGCAAGGGCCTGTGTACGAGACTATGAAGGGCACATCAATGAGATCACACATGGGCTACGCTTCCATGTGGACCCCACTGACTCATTGATTTTCGCTGCAGGAAAAGATTCAGTGACACGCATCTGGAGTGTTGGAAGTGGTAAACTTCTTCACACAATTCCATTTCCTGACAATGTGGACAAATCTTTCAGCCCCATCCCAGCTTTGTCCTACTCAGATGAATGGGGTGGTAAGGGTGGCATGTCAGGTCTCATGTATGGTGCTGGAGATTCAGTTTATTCATACTCATACTGAAGAGTTTGGAGAGTCAGACTTCTATGATATTTGTTACTCAAAAGGTTAATGGCAGAGTGGATAAATGGCAGGGAGGTCTCTGCTTTCTTCTGATCAGTGGAGAGGTACATTTGGTTAAATGTTTgtcctttaaagaaaaaaggtgaCAGAGAACAATTTTTGACAAATAGAAGACATGTAGATTGGGAACTCCATCTGACATTGACTGCATGAcaaatgagtttaaaaaaaggTATCTGCTTTGGTGAAGTGTGTGTCcttcaaaaagaaaaggtgaGAGAGAACATTTTTGCAACATAATGGAAACCTTCGATTGTAGGATGCCTGTTTCAGAAACAGGTCAAATCGATAGAATTTAATGTATGGCTTCATCCATAAGTGAACATAAGCTAGGATAAAGTAAGATATCAAATACCATAAATTACAGTGAAATTGAAATCAGTAAACCTTGCATTTGATAAAGAAATTCATCAGTGTGGAATATCTCTGGCTACCACCTATGAAAGTCTGTTGGAAGTTGAAAGGCCCAATGGTCAGCATAATGGAATTAAGGTCGAAAGGTTAGGGGTCAAGCCCTGGTGGGGTCAACCCAGAGAGAGAGGtg

Protein

Gene family

Family type	Membership / link
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR052254 all species →	Family	CUL4-DDB1 E3 ligase complex substrate receptor	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44472 all species →	DDB1- AND CUL4-ASSOCIATED FACTOR 4-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0080008 all species →	Cellular Component	Cul4-RING E3 ubiquitin ligase complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11799	DCAF4; DDB1- and CUL4-associated factor 4	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.