Gene detail

Detailed information of PFX32808.1 in Stylophora pistillata

Genomic Location: Spis.scaffold18:398919...410382
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-Spis2284_mrna

GGGTTTGTGAAAGGTTGTGTAAACTTTTAGTTTAAAGTTACGAAAAATGAAGGTTAAAGTCCTCTCAAGGAATCCAGCAGACTACATTAGAGAAAGGAGGACCGATATTCATAAGATCCATCGCAACTTTGACCCTTCGTTGCATCCCTTCGAAGCACCGCGCGAATATACACGGGCACTGAATGCTATCAAACTCGAACGGGTGTTCGCCAAACCGTTTGTCGGTTCGTTAGGTGGACACACAGACGGTGTGAATTGCATTTCTAGACATCCAAGGAATCTATCTGTGTTGCTGTCTGGGTCTTGTGATGGAGAGATTCGCTTGTGGAGTTTGCCGCGACGAGAGTGCCTGAAGACGTTAACAGCACACACTGGTTTTGTGCGTGGCTTGTGTACCTCTCCTTCTGGAGACACTTTTTTCTCAGTAGGGGATGACAAAGTTATAAAACAGTGGAGCATGGAACAAAGTTTTGATATCAGCTTAGAGAGTTCACAGACTCCACTCAACACCATCATTGGCAAGAATCTCTACCATGGTATTGATCACAACTGGAATAGCGATGACTTTGCGACATGTGGAGAGCAAGTTGACATTTGGAATGAGAACAGGGCTGATCCTATTCGGAGCTTCAATTGGGGCGTGGACACCATTCATAGCATTAAGTTCAACCCCATTGAGACCCACCTTCTCGCTAGCACCGCCTCCGATCGTAGTATCATCCTTTACGACATGCGGGGTTCCGCTCCACTGCGTAAGGTTGTCATGGAAATGAGAAGCAACACAGTGGCCTGGAACCCACTCGAAGCGTTTGTCTTCACCGCAGCCAATGAGGATTCAAATCTGTACACGTACGACATACGCCGGTTCAAAGAGCCAATTAACGTGCACATGGATCACGTGTCTGCCGTCCTCGACGTAGATTACTCGCCCACAGGACAAGAGTTTGTGAGCGGCAGTTATGATAAGACAATAAGGATTTTTGAGCGGGATTCTGGACGAAGCAGGGAGGTGTACCATACCAGCCGAATGCAGCGGGTATCGTGTGTGAGGTTCAGCGGGGATTCCACTTATGTTCTTTCTGGAAGTGACGAGACAAATATCAGAATATGGAAAGCCAATTCTTCTCAGAAGTTGGGAGCGCTTGCACCTCGAGAAAAAGCAGCTTTCAATTACAATGCAAAGTTAAAGGAGAGGTTTAAACATCATCCTCAGCTGAAGAGAATTAAAAGACATCGCCATGTTCCCAAAGCGGTATTTAAGGCAGCCAAGGAGAAGAAGATCATGATGGCTTCTGTAAAGAGGAAgGAGGAGAACAGACGTCTTCATAGTAAGCCAGGAAGCGTGCCTCGTGTGGcggaaagaaagaaacatgcTGTTGCCGTTGTTGAATGAGAAAGGTGCGCCTATTACTAATCACAAGCACGATACTATGCATGTGACTGGATATACTCGGTGGATCCTTGGCCATGCGATTGCAACTGAGTACGTTGAAGTACATCATCGTAATCACTTATGATCTGTGACATGCAACTGAAATTTCGCTTTATagataaaaattgaaaagttttctgGCTTTCTGTTTTGCGAGAATTTTCGGAGTTATAAGCGACGATTGTCGTAACAAAATCGCGGACGAAGATTTGCCGACTGGTGAAGGAGGAACATTGGATGTTACGCCAGCATATACTGTTTATTTTGCATGAGAATTTGCAGAGTTATGAGCGATGATTGTCGAAAAAACTTGTGGGCGAAAATTTGCCGATATGTGACAGAAGAGCATCATAAATTACTTCCGCGTATGTTGTTTTAAGAATTTACTGAGAGATTGTTTAATTCTGGGATCAGTTTAAGGCGCCTTTTCTCGAGAACTTGCGCAACGACAAACAATCAGGTCCAGAGAGTCACTCCAATAAATATGTTCTAAAAGTTTAACATTTGAGAATCTTAATCTTAAGTTTATCTGACTTATTTTGCGAACTAAGTGCCAtttcatgaaaataaacattacTATCTATTTGTAAGGCATTGTAGCGCATATTGCGGGCTAAAAATGAAGATTTTGGCGGACTAAATTGTACTTTAGCACGCTCGCACACACGCGTGACTGTGCAGACTGTTTTGTTGTCGTCTTTTCGATTTCTAGTTTTTCAATGACCTCCAAAGTGCTAATAGGGTTTATGTTCTCAGGCATAAAACTGTTTTAGGCCCTTCTCAAAGTCATTTTAACCTTCGCCTGCCGGCTCGGGTTAAGATAACTCTAAGTTgggcccaaaacatatttatgcttgCGAACATTAACTCTGCTGTCTTATTTATATCTACCAAAAAGAAGAAGCTTTAGCTAACGCTGAAATGTGTTTAAGAATAGATTGAAGTATTTTTGTTCGCTTGTAATATTGAAATATCATTtcgtaatgataatgatatcaTTAGAATAAAAAATCGTGATCATTATGTTTGCATTAGTGTTCGGTGTATGGTTGTAAGTTTACAGCTTGCGTGTCATCgac

Protein

Gene family

Family type	Membership / link
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF04158 all species →	Sof1	Sof1-like domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR051733 all species →	Family	WD repeat-containing DCAF13/WDSOF1	Interproscan
IPR007287 all species →	Domain	Sof1-like protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22851 all species →	U3 SMALL NUCLEOLAR RNA U3 SNORNA ASSOCIATED PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000462 all species →	Biological Process	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0032040 all species →	Cellular Component	small-subunit processome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11806	DCAF13, WDSOF1; DDB1- and CUL4-associated factor 13	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.