Gene detail

Detailed information of PFX32834.1 in Stylophora pistillata

Genomic Location: Spis.scaffold18:215776...222521
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-Spis2269_mrna

AACAAGTCGTACAACTCTAGACAGTTAACCTCAAAGGTTTAGAGGAAATTCTATCAGGACATAACGTGTTACTTACCAGTAGTTTAAACAGAGAAGGCCCAAGCGTTCAAACTACAATGCAGCATGAAACAGAGAAAATTGATGAGTTCAGAGGTGACAAAGTCTCCAGTGAGGATGAAGCAGGAACATTAAGCGTAGCTACCTATTCTGGTGACGAAAAGAACTGTCTGGCGGCAATTGCAGAAGCATATTCCAGCTCAGAGGACGAGGCTTCCGCAGACACTCACCTTAAGAGCAAAAGTGACTTGAATGAATATGGAAATTGCAACGAAACAGGTACCAATAGCTTTGTGGAAGTAGATGTCAATCTAGGTTCAGTTAGAGGGAAGAGTACAGCTTTGGAAGAACGAAACAGTAAGTGAAATAGTGTCAGCTCAGCCGAGACTACACCTCAGAGTAAACTTGTGGTAGGATTTGAAGGAGGTAATCTCGTACCCTTAGAACCTGGGCATAATGGATGtgctcattttgaaaaagaaagtgatGATCAATTAGTTATGGAGACATCGCCTATCGGGGATCACTTCATTGCTCCAAGTGGTGGAGAAAATACTCTCTTATATCCTGCAAAAGATGAACATACATTATCAGAACCTGAAAGGTGTGGACATACACTTAACATAAAACCTAAGGATAATGAATGCTCTGTAGAAGAGTCTATTGACAATAGACACCCATCTGTTAAGCATCTGGATGATGGACAGAGCTTCGTAAAGAGTAATGGCATGGCATCTGTGACAACACAGAATGTTGAGAAAACGTGTGAGAAGCCAGATAACATGAAAGCTACAGATCCTTCCCAGGGAGATCAAAGCAAAATTATCGCGTCAGAGAATCATGGTCACCTGCCTACAAACCATATGCATGATGTAGTTACTTGTCATCAGGTATACACTATGCATAGTATTGACAAAGAACTTGAGAGTATCAGTGAGGCTGGGGGTGCTGTGGAGACAGCAGGACACACAGGGTGTCCAACTGCAATTAACTCTTCGTCCAGCGATAGTTCTTCAGATGATGAAAGTTCGTCAAGTGAAAGCTCTGAATCCAGCTCTGATGACGATCTGGAAGAcatcagaaaagaaattgaaagagaGGAGGATCGTACTCATGTAGGGCCGCTGAAAACGAGAAGTGAACTGTCAGTGAAGgACCTTCCTGAAGTTCCAGATTTGGATATTACTGTTGACCAAAATGTTCAGCTTGTAGAACTTGGAGTGGTGTTTAGTGTGGTTGAGTCATTAGTGGTAGTCAAAGCCTTGCCGCAAACCCCAGCTCTAGATTCAGACAGTGCCCTTTTCTTGGAAAATAGATCCTGTCTGGGTGTGGTTTTTGAGACCTTTGGACCAGTACAGACTCCATTTTATTCAGTCAGATTTAACAATGAGGCAGACATTGATAAAAGGAATGTTCACTTAGGAGACAAAGTGTTCTATGCTCCTGACATGATGGAGTATTCCAACTTTGTCTTTGTAGCACAGCTTAAAAAGTTAAAAGGATCTGATGCCTCATGGGAACACGATGAAGAACCCCCGGTAGAGGCTGTGGAGTTTTCTGATGACGAAGAAGAAGCTAAAGGCAAGACcaccaaaaagaaagaaagAATGGCTAAGAAAGGCCCATCTGCAGATGTTGATAAAGCGAGTAACACAGAGAGTGAAAGAAATATTCACCAGGGATCCAATCGAGGTGGCAGGAAAAGAACTTGGCAAAACCGTGGAAGGGGAAAACCCTCCAACCAAAACCAGGATGAAGGGAATTTTGCTACTAGTCCAAGAGGACCCTTTACCCCAGTAAGAGGCACATTACCACTCAAGACGCCTCCTCATGTGGGGTCAAGACCTCTCTTTTTACCAGGGAATCCCTACGTGAACCACCCACCACAAGGTCCTCAACATTTGATGATGGGACATACAGGACCCCATGGAGGTGTACCTCCTAGAGGTCCACCTCTAAGAGGCCCATTTATGCCACAGTCCATGGGACCTTCTCCTGATACATATCCTGGCCTTATGGGAAATGCACCCCCACCTCAATTTGGTGCACCAAGGCCATCTACTTCTCAATATTTCCCTTCAGGGCTACCACCAGGATTTGCACCTAGGAATGTTATACCTGGACCTGCAGGTCCTTATGACTATAGAGCAAATGTTGGACTTCAAACAAGAGATGTCCACTCAAGtttccccccaccccctcctcccacACATCCACCTAATCTTTGACCCTCCAGTGTATAAATGATACATCGCAGTGATAATTGCTCAAAATGCAAATCTTCTGCCctggaagaaaatttaaaatgtgtttGTTACTGATCAATTACACTGAGTTGTAGCCTCTGTTGAGAAAGTGTGATCAACATTGTTGGCATAACAAAATCAGGCATCATGTCAAATAATAATGACTTCTAAACTCGCTTGTAGTTAGGAGGGAATCATTAATCAATGTTCTGACTCTTTTCAATTTGTTAGCATAAGCTATTTAACCACGTCACTCTCTAAATCTCATTTTTATTACCATTTAGTAAattaaattctctttactgcagctatacaattcttacaacgttggttttgagaattttgttttggatcaactaat

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04410 all species →	Gar1	Gar1/Naf1 RNA binding region	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR040309 all species →	Family	H/ACA ribonucleoprotein complex non-core subunit Naf1	Interproscan
IPR007504 all species →	Family	H/ACA ribonucleoprotein complex, subunit Gar1/Naf1	Interproscan
IPR009000 all species →	Homologous_superfamily	Translation protein, beta-barrel domain superfamily	Interproscan
IPR038664 all species →	Homologous_superfamily	H/ACA RNP complex subunit Gar1/Naf1, Cbf5-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31633 all species →	H/ACA RIBONUCLEOPROTEIN COMPLEX NON-CORE SUBUNIT NAF1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000493 all species →	Biological Process	box H/ACA snoRNP assembly	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005732 all species →	Cellular Component	sno(s)RNA-containing ribonucleoprotein complex	Interproscan
GO:0042254 all species →	Biological Process	ribosome biogenesis	Interproscan
GO:0001522 all species →	Biological Process	pseudouridine synthesis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14763	NAF1; H/ACA ribonucleoprotein complex non-core subunit NAF1	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.