Gene detail

Detailed information of PFX32884.1 in Stylophora pistillata

Genomic Location: Spis.scaffold18:246967...252612
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-Spis2272_mrna

CAAAGGCGAGCAGACCTCATGTTTGGCGTTTTAGTccacttttgaaagaaaacaaatttcttcaaaagtgTGGGGTCTCCTCACTGATTCTCGTCGACTCCATAATTTCTCCGTTTTTATTTCCCTTCTTCCGTTATTACCGCCAATTTCCTCGAGGAAGTTAGCGGTAATTTCGATCAACGTATCTTATCTTCTAACCGTGGACGTCGCCGGCCATATTTTGAACTTATTTATTATTCGATCGACAACTCTCCACGCAAAAACGCTCTTTTATCTTCGTCTTTTTAAATCATTCCTGAAGTAATTTACCTTCACAAGTCCAGCGATTGTACCGATGGCTCAGAAAACGCCCGTCAGCTTGATGAACGAACTAGCCAAAGCCAACAAACTCAACCCCGAATACAAAGTCATTGAGGAAACCGGACCAGCTCACCAGCGAACGTTTACTGTACAACTAACCCTGGGAGACGTGGGGACGTGGGAAGGTAAAGCGACAAGCATCCGAAGCGCCAGACATGCGGCAGCTACTGTGGGTTTGGAGAATTGTGGGTTAACAAAGCCTGAGATTGAGAAACCTCAAATCAACCAGTTCAACATAACTCCTACGGTGGAACTGAACGTGATGGCAATGAAGCTTGGCAAGCTGACGCAGTACCATGATCTGCAGCCTAAGATACCGTCACAATACCAACCAATCAGCATGGGTTATCATAGCCTCCAGATGCAACATCATCACACTGGCTTGCATCACTTGATGCAACCACCCCGTTCCCCCTTTAGCATTGCACACCCAGGTCAAGAAAATCATTATCGTCCACACTTCCAAAATGGATTTCATTACCGTTCTCCACCTCCCCGTGTACCCAGAATCTTTTGTGTCAAGCTGATCGTGGGAGACCAGGAATTCCATGGCGAAGGACGTGACAAGCAGAAAGCTCGTCAAAATGCGGCATCCAAAGCAATCAAGATGCTGCGAGGTGAGATGGCTACTATTTGGGAAAAGGTGACGACATCCTCAACACCTGAAGAATCAAAGACAGCTAACCAAAATGGTGAAAACAATGTTAATCAATCAGAGAGTTCTCCTAAGGAGGGTCTCACTGAAGTGAAATCTGAGATCAGTCAGGTGTACGAGATAGCTTCTAAACGGAAACTGCAAGTAGGATTTGAAGATGTGAAGAGCAGTGGCCCTCCCCACATGAAGCTTTTTGTGGTGAGTGCCACTGTGGGTGAATTCAAAACATTAGGGGAGGGCTGTAAGAAAAAGGATGCAAAACAAGAGGCTGCCAGAAAAATGCTGGAAGAGTTACAAAAGCTACCTGAGCTACCCAAAGATGAAACTAGCTACAAGAAAACTGGTCGGTTTGCTCCCCGTGGGCCTCGGATATCCCATCACGAAAAGCCAAAGGGAGAGATAGATCCCTCCATGAACCCAGTCAGCATTCTGGGGCAGATTCTTCAGCGAAGACATGATCAGCCACCAGACTATGAACTTCTTTATGAGAGGGCAAAGGGAAATGAGAGGGAGTTCAAAATGCGAGTGACTGTAGGTCAACACCAGGCTGCTGGATGTGGTTCAAACAAGAAGGAAGCCAAGAAAAAAGCGGCAGAAGCCATGTTACAACTGATTGGATTTCGCTCTCCTGAAGGACAATCAATACCTGGAGACAAGGCTGTGAAAACAGAAAAGAATGATGCAGAGCAAAAGGCTTCTTTAAATGCTAATGGAACAAACAGTGAACCACCCACCATACTTGGCCGACAGCTGAAGCCTGGACTGCTCCCGATGGTTCCGGAGCTGGTTAAACAAACTAGATCAGATCTGATGAACTCTGTGGTTGCACCTATAGCACAAGTCAAGCAGGAACCACAGGAGCCTACCGTCCAGGGTGGACTTAACCGCGCCCCTGGGGCTCCTGTGGTGAAGTCAACAGCTGGAAAACCTCTTACGTCTATTCAGAAGCTAATACATGTGGCTGATGTTGAAGGACTCAGAGTACAATTTACTGATTACTCCAAGgaGAGAGAATTTCTGACTGTTGTCACGGTGTCATCCATTCCTCCCCTCACTTGCCATGGATCAGGAAAAACTGTAGAGGTCTCACGAGAAGCTGCTGCAAATAATGCTTTAAAACCACTACTTCAGTTACAAGGAAGTATCAAAACCCAACCACCGGCCACTAAGGACATCAACACAAGTGATGAAGCCAGAGAACACCAAGCAAAGAAAGATTAACAATTTTGATGAAGTTTGGAGAAAGCCAATGAATGGATCGTACAAATGACCTGCTTTAAAGGCTGCTTTGATCTTAGTAAATTATCAAGTAGATTTAAGTGTGATTACAAGAGATAAAGAATtagtaaaatagttttttttatgtacatggAGTCTCCAAATCTGTGCACAAAATGAGAGAACTGGTCACCTGTTGAGGGTCCTACCTATTAAGTTGGttatgttgttttattttttaaataattaatgtTTTCCTTGATAAAGAGGGTTGATAAAGGCTCTTTAAGATCTTTATTGACCCTGCTTTGCCTTTACATAAGACATGCAGTGCTCTGACATTAGGTGTGGACCAATAAATTTTGCCAGTTAGTTTGAAAAActaacttttgttattttttaaaacaatcacTCTTGGGTAAGCCATTGCAAGCTTGCTGAATGCATGGACAAAGACATGATtcgtatgatgcatgatcctcgcagtagagagcgctatgTAGGTTATGgcgtgcatcatatgtatctataaccgcagttcaaaat

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00035 all species →	dsrm	Double-stranded RNA binding motif	Domain	Interproscan
PF16482 all species →	Staufen_C	Staufen C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014720 all species →	Domain	Double-stranded RNA-binding domain	Interproscan
IPR032478 all species →	Domain	Staufen, C-terminal	Interproscan
IPR051740 all species →	Family	Double-stranded RNA-binding domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46054 all species →	MATERNAL EFFECT PROTEIN STAUFEN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003725 all species →	Molecular Function	double-stranded RNA binding	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007281 all species →	Biological Process	germ cell development	Interproscan
GO:0008298 all species →	Biological Process	intracellular mRNA localization	Interproscan
GO:0010494 all species →	Cellular Component	cytoplasmic stress granule	Interproscan
GO:0035418 all species →	Biological Process	protein localization to synapse	Interproscan
GO:0043005 all species →	Cellular Component	neuron projection	Interproscan
GO:0043025 all species →	Cellular Component	neuronal cell body	Interproscan
GO:0098964 all species →	Biological Process	anterograde dendritic transport of messenger ribonucleoprotein complex	Interproscan
GO:1990124 all species →	Cellular Component	obsolete messenger ribonucleoprotein complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17597	STAU; double-stranded RNA-binding protein Staufen	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.