Gene detail

Detailed information of PFX33179.1 in Stylophora pistillata

Genomic Location: Spis.scaffold14:567289...574228
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Rps13

ATGAGCCGCCCTTATCGCAATCATACGCGATATAGGCAACGTCCCTACAAGCATTGGACAGAATCAAGCGCTGTCAAGCAAGAAAAGGTGTATGAAGATGTAAACTTTTCGTCATCACCGTATACTTATCCAACGTTTTCACCAGATAATGGCGGCAATAGTCGACTGCCAGGCTGGGATTACCTTCTGCGTCGCAAAGCCGAAAACATTAACGATCGTATTCTTAAGAGTAAGGCATCAGCATCTTGTGGTGGAACATCGCATGATGAAAGTTATGAGGCATCATCACAGTTTGTAATCAAACAGGGGCCAGATAACCCAGCTGCAAGAGAACAATATAGCTATTCAGCGTTATCATGGACACCTTGTAATGACCCTTCACAAGAATATGCTCAAAAAGGAGGATTTTGGATTGAAAGAAAGGAAGAGAGAAGCAACCCGGATCTTAAAGCTGGACAATCAAATTCCGATCGACTCGCTAATGCGTTTGAGAATCAACAGATGCGTAAAGTTAAAATCGAGCACCCTTTGAGGATCCCTCACCATAAAGGCCGTCATTCCAATTACCCAGGTGCAAGTACTGGTCAAGGTAGTAATCTGACAGTTGAAAAATTGATATCTAACATTCGAAGTGCTGTTGCTTCAAATCCAAATTTTAAGAGAAACATAGTAGATTCTGCATGCAGTCAGACTTCAGAAAATTGCAAGAAACAAAGTAGTATTTCAGGTACAAGTTTTGGGACAACAAGTTCTGGATTGAGAAACCCTGTAACTCAAGTGTCTGAGGAAATATCCAACTCTCATTCACCTTACAATACTGGTAATGAAGTCAGGCATGGCACCATGATGGACAAGACTAATGACATACCACATGGAAGTGGAAAAATACACCACAACTCAAAGCCAGATACAAGGAGAAATCAGTATATTCCTGGAGATAGGAAGACTCTTACTCATACTCTACCTTATCCAGCAGAAGGCGTTGAAGTGCAATACACCCAAGATCCAATTGAAGCAGAGGCTTGGTTAAAGAATAATATTATTGATTGTTCTGCACAGGCAGTTGGTTTAGACATTGAGTGGAAGCCCCAGTTTAAAAGTACGAAGGATGGAGGAGTAGAAAGCAAGCCTGCAGTGTTGCAGCTGAGTGTTGAAGGGTCATGTTTGGTTTTGCACCTTTGTCACATGAAGTCAAAACCAAAGTTGCTGAAGAATGTTTTGAGTAATAAGATGATATTAAAAGTTGGAAGTGGAATTTTACAAGATGTTACAAAGCTAAATCGTGACACAGGACTTAGTTGCAAGGGGCTGATGGATACACAGAAAATGGCTAAGTCAATAGGCATCCCTGTTTCACAGAAGCTAGGGCTCAAAGCTCTTGCCAAACATTTCCTTGGGTTTGACCTGGAAAAACCAAAGTCTGTGTCCATGAGCAACTGGGAGAGACGTCCCTTAACACTTGAACAAATTCATTATGCTGCGTTGGATGCATGGATTGGATTGAAAATTTACTTGCACATGAAAATGGTGAAGGGCCAAGAACAAGTGTTCATGGAGGAGGATGTTGAGGAGCCAGTAGAGACTCTCCAGTGTCGAGTGTGCGGCAAAAAGGTTAAAGGCCAGGATGGCCTCAATGAACACAGCAGTATTCATCCTCAGTGCAAATGTGGACAGGTCTTTTTGGTGAAAATTTCTAAAAAGCACCAAAAAAAGTGTCCTTTTAGCAGTAGTTTGGCACAAGAAGGTCAAACTGCAGACGATGTCACAGTTTGGTGCCAGGGCTGTGGAAAGAAATGCAAGAATGAAGAAGTACTCATGAAGCATGTGAGAGAACGCGGTGACTGCTACAAGAAAACTCTCAGAATGGGTCGATTACACGCACCAGGGAAAGGTATATCTGGTTCAGCTTTGCCATATCGCCGAAGTGTCCCAACGTGGCTCAAGTTGACAGCTGATGATGTCAAGGAACAAATCTACAAGTTAGCCAAGAAGGGCTTGACTCCTTCTCAGATTGGTGTGATTTTGCGTGACTCACATGGTGTGGGACAAGTATGCTACATTACTGGAAACAAGATTCTCAGGATTCTCAAAGCCAAAGGGCTGGCTGGAACACTTCCTGAGGATCTTTATTTCCTCATCAAAAAAGCCGTTGCTGTGCGCAAGCATCTTGAGAAGCACCGAAAGGATAAGGACTCTAAATTCAGGCTGATTCTAATTGAAAGTAGGATCCACCGTCTGGCTCGTTATTACAAGACCAAGAGAGTTCTGCCTGCAAACTGGAAATACGAATCATCTACAGCCTCTGCTTTGGTTGCATAA

Transcript

rna-Spis1901_mrna

ATGAGCCGCCCTTATCGCAATCATACGCGATATAGGCAACGTCCCTACAAGCATTGGACAGAATCAAGCGCTGTCAAGCAAGAAAAGGTGTATGAAGATGTAAACTTTTCGTCATCACCGTATACTTATCCAACGTTTTCACCAGATAATGGCGGCAATAGTCGACTGCCAGGCTGGGATTACCTTCTGCGTCGCAAAGCCGAAAACATTAACGATCGTATTCTTAAGAGTAAGGCATCAGCATCTTGTGGTGGAACATCGCATGATGAAAGTTATGAGGCATCATCACAGTTTGTAATCAAACAGGGGCCAGATAACCCAGCTGCAAGAGAACAATATAGCTATTCAGCGTTATCATGGACACCTTGTAATGACCCTTCACAAGAATATGCTCAAAAAGGAGGATTTTGGattgaaagaaaggaagagagaAGCAACCCGGATCTTAAAGCTGGACAATCAAATTCCGATCGACTCGCTAATGCGTTTGAGAATCAACAGATGCGTAAAGTTAAAATCGAGCACCCTTTGAGGATCCCTCACCATAAAGGCCGTCATTCCAATTACCCAGGTGCAAGTACTGGTCAAGGTAGTAATCTGACAGTTGAAAAATTGATATCTAACATTCGAAGTGCTGTTGCTTCAAATCCAAATTTTAAGAGAAACATAGTAGATTCTGCATGCAGTCAGACTTCAGAAAATTGCAAGAAACAAAGTAGTATTTCAGGTACAAGTTTTGGGACAACAAGTTCTGGATTGAGAAACCCTGTAACTCAAGTGTCTGAGGAAATATCCAACTCTCATTCACCTTACAATACTGGTAATGAAGTCAGGCATGGCACCATGATGGACAAGACTAATGACATACCACATGGAAGTGGAAAAATACACCACAACTCAAAGCCAGATACAAGGAGAAATCAGTATATTCCTGGAGATAGGAAGACTCTTACTCATACTCTACCTTATCCAGCAGAAGGCGTTGAAGTGCAATACACCCAAGATCCAATTGAAGCAGAGGCTTGGTTAAAGAATAATATTATTGATTGTTCTGCACAGGCAGTTGGTTTAGACATTGAGTGGAAGCCCCAGTTTAAAAGTACGAAGGATGGAGGAGTAGAAAGCAAGCCTGCAGTGTTGCAGCTGAGTGTTGAAGGGTCATGTTTGGTTTTGCACCTTTGTCACATGAAGTCAAAACCAAAGTTGCTGAAGAATGTTTTGAGTAATAAGATGATATTAAAAGTTGGAAGTGGAATTTTACAAGATGTTACAAAGCTAAATCGTGACACAGGACTTAGTTGCAAGGGGCTGATGGATACACAGAAAATGGCTAAGTCAATAGGCATCCCTGTTTCACAGAAGCTAGGGCTCAAAGCTCTTGCCAAACATTTCCTTGGGTTTGACCTGGAAAAACCAAAGTCTGTGTCCATGAGCAACTGGGAGAGACGTCCCTTAACACTTGAACAAATTCATTATGCTGCGTTGGATGCATGGATTGGATTGAAAATTTACTTGCACATGAAAATGGTGAAGGGCCAAGAACAAGTGTTCATGGAGGAGGATGTTGAGGAGCCAGTAGAGACTCTCCAGTGTCGAGTGTGCGGCAAAAAGGTTAAAGGCCAGGATGGCCTCAATGAACACAGCAGTATTCATCCTCAGTGCAAATGTGGACAGGtctttttggtgaaaatttctaaaaagcACCAAAAAAAGTGTCCTTTTAGCAGTAGTTTGGCACAAGAAGGTCAAACTGCAGACGATGTCACAGTTTGGTGCCAGGGCTGTGGAAAGAAATGCAAGAATGAAGAAGTACTCATGAAGCATGTGAGAGAACGCGGTGACTGCTACAAGAAAACTCTCAGAATGGGTCGATTACACGCACCAGGgaaaggTATATCTGGTTCAGCTTTGCCATATCGCCGAAGTGTCCCAACGTGGCTCAAGTTGACAGCTGATGATGTCAAGGAACAAATCTACAAGTTAGCCAAGAAGGGCTTGACTCCTTCTCAGATTGGTGTGATTTTGCGTGACTCACATGGTGTGGGACAAGTATGCTACATTACTGGAAACAAGATTCTCAGGATTCTCAAAGCCAAAGGGCTGGCTGGAACACTTCCTGAGGATCTTTATTTCCTCATCAAAAAAGCCGTTGCTGTGCGCAAGCATCTTGAGAAGCACCGAAAGGATAAGGACTCTAAATTCAGGCTGATTCTAATTGAAAGTAGGATCCACCGTCTGGCTCGTTATTACAAGACCAAGAGAGTTCTGCCTGCAAACTGGAAATACGAATCATCTACAGCCTCTGCTTTGGTTGCATAAGCTAACTctgtaaacaacaaaataaaaccattgTGTAGAATTCAC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08069 all species →	Ribosomal_S13_N	Ribosomal S13/S15 N-terminal domain	Domain	Interproscan
PF00312 all species →	Ribosomal_S15	Ribosomal protein S15	Domain	Interproscan
PF01612 all species →	DNA_pol_A_exo1	3'-5' exonuclease	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR000589 all species →	Family	Small ribosomal subunit protein uS15	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR012606 all species →	Domain	Small ribosomal subunit protein uS15, N-terminal	Interproscan
IPR023029 all species →	Family	Small ribosomal subunit protein uS15, archaea/eukaryotes	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR009068 all species →	Homologous_superfamily	uS15/NS1, RNA-binding domain superfamily	Interproscan
IPR002562 all species →	Domain	3'-5' exonuclease domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11885 all species →	RIBOSOMAL PROTEIN S15P/S13E	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0022627 all species →	Cellular Component	cytosolic small ribosomal subunit	Interproscan
GO:0070181 all species →	Molecular Function	small ribosomal subunit rRNA binding	Interproscan
GO:0006139 all species →	Biological Process	nucleobase-containing compound metabolic process	Interproscan
GO:0008408 all species →	Molecular Function	3'-5' exonuclease activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for PFX33179.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.