Gene detail

Detailed information of PFX33262.1 in Stylophora pistillata

Genomic Location: Spis.scaffold14:967859...984736
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Metap1d

ATGTGGGCCAAACTCGGGCGCTTGAGGCCAAGATGTCTAAGATGCTTAGAAGAACAGCTTTACAAAAGGAATGTTAATTTTAACCACAGAAACTCTTCAACAAATAAATCATATGAAGTTGTAACAGAACTGTACAAAGTTTCTCCTGCTGGCCATGTACCTTCACACATAGAACATCCACCTTATGCCCACACTGGTAAAGTCCCAGATCCACCCCTCTCCACTGAGATTAAAACAGAGAAACAGATTGCTCTCATGAGAACAGCGTGCAGAACAGCCAGGAAAGTTCTCAATACAGCTAGAGATAATATCATGGTAGGTGTCACAACAGAAGATATTGACCAGATAGTACACCAAGCTGCTGTTTCGTTTGGAGCGTACCCTTCCCCTCTCAACTACAAAAAGTTTCCCAAGTCTGTGTGTACTTCTGTTAATAATGTGGCTGTACATGGTATACCAGACAGTCGACCTTTGCAAGATGGTGACATTATCAGTGTGGATGTTTCTGTCTTCATAGGTGGTATGCATGGTGACTTGTGTGCAACATATATGATTGGTTCTGTTGACAAACAGGGTCAGAGATTACTAGAAAGCTGTCAGCGTAGTCTTGATGCTGCAATTAGTATCTGTAAACCTGGAGTAAGGTTTTCTTTGATTGGAAACACAATCGAGTCTGTTGCTAAGAAGGATGGATTCACAGTTTGTCCCAATTTAGCAGGTCATGGTATTGGATCATATTTTCATGGATCTCCAGAAATTTTGCATACAGGAAATTATAAACCTGGTAAAATGGCAGCAGGCATGACATTTACTATTGAACCAGTACTTTGTGAAGGATCTTCAGAAATAGCTATTCTAGGCGATGGTTGGACTGTTGTTACAAAGGATGGCAAAAGAAAGACAACATGGCGGCTGAAGTTCCCATCGCCAACCGCCACGTGGAAAGGCCGATTACTGGCGGCTACGCTTTCTGTGCGTCGCCTCTGTACGAATCCAAGCCTCGTCTTTGACACTGGGGCTTTTGACCTTGCCTCCCCAAAAACTAAGGATGATCTTCTCAGGACTTCAGTTCTAGATGAAGGTGACAGCCTCTGGTCTGTTGGTCCTGTTCCAGATTGGAACAAGGCAAATCCTGGAGAACTTTTCTTTGACCAAGTAGCTGAACTTGAGAAGCTCATTCCAGGGGAGAGAAGCAAGGGACACTGTTTGGAGGAGTCTTGGATGGCAAATGTGGAATTTCTCAAGAGTGAAGAGATCATCAACAACTGGGCTGGTCCAGAAGAAAAACTTGATGGAATCAACCAAGCTGATAACATATGTGCTGGAGCTCAGAATGTTGGCTTGGATATTTGTGGAGGAAGGAAGGTGGGAAGTATAGATTTCATTATGATTGAGCAACAAACACAAGAACATGGGCTGAATGGGGAGGCAACAGAAGCAGCACTGTTTGATGTTACTCAAGATTCTCCTTCATCAGTTGGAAGTTCTTGCAGTGATGAAGTTTCAGACAAGAGACTAAGGAACAACAAGGCTTCCAGAAAGTTTCGTCGTGCAAGAAAGGAAAGAAATCATTCGTTGTTTGCAAGAGCATCAAAGTTGGAGCAGGAAAACCAGGCCCTGAAGCTTCAAGTTAATCAGATGCTTCAGGAAATTCGTTTGCTATGTACCACTGATGTCTTAAGGCAGAAGGATTTAAAACATTTCAAAGAAGGAACCCAGAAAAAAGACAACTTACATGATGATCATACAAAGGGCAACGAGATCTACAGAATGCCACATCCTATTTGGTCAGAGGAAGAAGTTAATACTGTAGAGATTACTCATCAAGAGGCAAAGACAAAAGTTGACAAGCTTGCCTATTACTGTGTGCAGTTCTTGAGGGTATCATTTGATATTGTTTCTTTGTATAAAGTTGGAAAGATGACAGAGAACAAGTGGTTAAATCGTATCATCATGTTGGAGACAGTAGCCGGGGTGCCTGGAATGATTGCAGCGATGGCTCGTCATTTTGACTCACTGAGGAAACTTACCAGGGATCATGGATGGATTCATACATTGTTAGAGGAAGCAGAGAATGAGAGAATGCATTTAATGACAGCATTGGAACTAAAACAACCAGGGGCTTTATTCCGGGGCATTATATTGCTTGCACAAGGTGTCTTTGTCAATTGCTTCTTTCTGGCATATATTTTAAGCCCCAGGTTTTGTCACAGATTTGTGGGATATTTAGAAGAGGAGGCAGTCAAGACTTACACCTACTGTTTAAAGGAGACATCTGCGTCAAAAACGATTCGAGAAAGTCAAAAATTGCCAGCTGGATCATAG

Transcript

rna-Spis1934_mrna

ATGTGGGCCAAACTCGGGCGCTTGAGGCCAAGATGTCTAAGATgcTTAGAAGAACAGCTTTACAAAAGGAATGTTAATTTTAACCACAGAAACTCTTCAACAAATAAATCATATGAAGTTGTAACAGAACTGTACAAAGTTTCTCCTGCTGGCCATGTACCTTCACACATAGAACATCCACCTTATGCCCACACTGGTAAAGTCCCAGATCCACCCCTCTCCACTGAGATTAAAACAGAGAAACAGATTGCTCTCATGAGAACAGCGTGCAGAACAGCCAGGAAAGTTCTCAATACAGCTAGAGATAATATCATGgtaggTGTCACAACAGAAGATATTGACCAGATAGTACACCAAGCTGCTGTTTCGTTTGGAGCGTACCCTTCCCCTCTCAACTACAAAAAGTTTCCCAAGTCTGTGTGTACTTCTGTTAATAATGTGGCTGTACATGGTATACCAGACAGTCGACCTTTGCAAGATGGTGACATTATCAGTGTGGATGTTTCTgtcTTCATAGGTGGTATGCATGGTGACTTGTGTGCAACATATATGATTGGTTCTGTTGACAAACAGGGTCAGAGATTACTAGAAAGCTGTCAGCGTAGTCTTGATGCTGCAATTAGTATCTGTAAACCTGGAGTAAGGTTTTCTTTGATTGGAAACACAATCGAGTCTGTTGCTAAGAAGGATGGATTCACAGTTTGTCCCAATTTAGCAGGTCATGGTATTGGATCATATTTTCATGGATCTCCAGAAATTTTGCATACAGgAAATTATAAACCTGGTAAAATGGCAGCAGGCATGACATTTACTATTGAACCAGTACTTTGTGAAGGATCTTCAGAAATAGCTATTCTAGGCGATGGTTGGACTGTTGTTACAAAGGATGGCAAAAGAAAGACAACATGGCGGCTGAAGTTCCCATCGCCAACCGCCACGTGGAAAGGCCGATTACTGGCGGCTACGCTTTCTGTGCGTCGCCTCTGTACGAATCCAAGCCTCGTCTTTGACACTGGGGCTTTTGACCTTGCCTCCCCAAAAACTAAGGATGATCTTCTCAGGACTTCAGTTCTAGATGAAGGTGACAGCCTCTGGTCTGTTGGTCCTGTTCCAGATTGGAACAAGGCAAATCCTGGAGAACTTTTCTTTGACCAAGTAGCTGAACTTGAGAAGCTCATTCCAGGGGAGAGAAGCAAGGGACACTGTTTGGAGGAGTCTTGGATGGCAAATGTGGAATTTCTCAAGAGTGAAGAGATCATCAACAACTGGGCTGGTCCAGAAGAAAAACTTGATGGAATCAACCAAGCTGATAACATATGTGCTGGAGCTCAGAATGTTGGCTTGGATATTTGTGGAGGAAGGAAGGTGGGAAGTATAGATTTCATTATGATTGAGCAACAAACACAAGAACATGGGCTGAATGGGGAGGCAACAGAAGCAGCACTGTTTGATGTTACTCAAGATTCTCCTTCATCAGTTGGAAGTTCTTGCAGTGATGAAGTTTCAGACAAGAGACTAAGGAACAACAAGGCTTCCAGAAAGTTTCGTCGtgcaagaaaggaaagaaatcattcGTTGTTTGCAAGAGCATCAAAGTTGGAGCAGGAAAACCAGGCCCTGAAGCTTCAAGTTAATCAGATGCTTCAGGAAATTCGTTTGCTATGTACCACTGATGTCTTAAGGCAGAAggatttaaaacatttcaaagaagGAACCCAGAAAAAAGACAACTTACATGATGATCATACAAAGGGCAACGAGATCTACAGAATGCCACATCCTATTTGGTCAGAGGAAGAAGTTAATACTGTAGAGATTACTCATCAAGAGGCAAAGACAAAAGTTGACAAGCTTGCCTATTACTGTGTGCAGTTCTTGAGGGTATCATTTGATATTGTTTCTTTGTATAAAGTTGGAAAGATGACAGAGAACAAGTGGTTAAATCGTATCATCATGTTGGAGACAGTAGCCGGGGTGCCTGGAATGATTGCAGCGATGGCTCGTCATTTTGACTCACTGAGGAAACTTACCAGGGATCATGGATGGATTCATACATTGTTAGAGGAAGCAGAGAATGAGAGAATGCATTTAATGACAGCATTGGAACTAAAACAACCAGGGGCTTTATTCCGGGGCATTATATTGCTTGCACAAGGTGTCTTTGTCAATTGCTTCTTTCTGGCATATATTTTAAGCCCCAGGTTTTGTCACAGATTTGTGGGATATTTAGAAGAGGAGGCAGTCAAGACTTACACCTACTGTTTAAAgGAGACATCTGCGTCAAAAACGATTCGAGAAAGTCAAAAATTGCCAGCTggatcatag

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01786 all species →	AOX	Alternative oxidase	Family	Interproscan
PF00557 all species →	Peptidase_M24	Metallopeptidase family M24	Domain	Interproscan
PF07716 all species →	bZIP_2	Basic region leucine zipper	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038659 all species →	Homologous_superfamily	Alternative oxidase superfamily	Interproscan
IPR036005 all species →	Homologous_superfamily	Creatinase/aminopeptidase-like	Interproscan
IPR004827 all species →	Domain	Basic-leucine zipper domain	Interproscan
IPR002467 all species →	Family	Peptidase M24A, methionine aminopeptidase, subfamily 1	Interproscan
IPR001714 all species →	Family	Peptidase M24, methionine aminopeptidase	Interproscan
IPR002680 all species →	Family	Alternative oxidase	Interproscan
IPR000994 all species →	Domain	Peptidase M24	Interproscan
IPR046347 all species →	Homologous_superfamily	Basic-leucine zipper domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43330 all species →	METHIONINE AMINOPEPTIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0070006 all species →	Molecular Function	metalloaminopeptidase activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0009916 all species →	Molecular Function	alternative oxidase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for PFX33262.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.