Gene detail

Detailed information of PFX33269.1 in Stylophora pistillata

Genomic Location: Spis.scaffold14:213591...225103
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

MBD6

ATGAGTGATCAAGGAATCAGTGAACAACCCAGCAATGGACCTAAATGCATTGAAATTCCACGAGGCTGGAGCCGGATTCTTGAAAATGGTTCCATTTTGTACATAAGCCCCAACAACAGCCGATTGAGGTCCTTAGAAAATGTGATTGAGTATCTCAAGACAGATGGGACCTGTAAATGTGGACTTGAGTGTCCCCTTTTCATTCACAAAGTGTTCAACTTTGATGCAAGAATTCCAAGTAAGCTAATTCCAGTGCACAGCAGAGCAGAACTTTCACAATCAGGCTGCAAACACTGTGTTATTGACTCAAACAACCCTCAGCAGCCATCAGAAGTTGCAGGAAATCAAGCCAGTGATGCTAAGCTGTCAGGATTTTCAGCAGTGGCCCCCAAAAGAGGTCCAGGAAGACCCCGCAATCCCTTATCCAAGTCACGGAGAGTTGCTGTACGAAAGCATGACCTTGACAGGTCAACCTCACCACTTCATAATATCCCTCTTCCTGTTCCAAGCTCCATTGCTAACAGTCCTGTCCAGAGTGTTCCAGCCAACATTGCAGTTGAACAGGGCCCCTTGCCAAGCTTTGCGACCATTGTGAGCAGTTCAAAACTCTTTAACCCAGGAGCAGCCCTGGGGAATACTAAGTTGTCAAGTAGTACTGTAACAAGTGGGATAAGCAGCTCTCCTATAGCAGCAGTGTCACTACTTCCATCAAAGACAGCTACTACAACAGCCAATGTTAGCTCAGCTCCAAGTCACAGTGTCACAGCAACTACATCAGCTGTTACCACTTTGGCTACAATGGGACAGAGTGTAGTGGAAGTTACTAAGACTGCAGTCCCTGTTTCAACTACAGTAGTTGTCACTCATCAGCAAACAGCAGTAGCTGCAGCATTACAACCGACTGGAAGTCAAACAGAAAATACTCTGCCAAAGAGCACCAGGTCCTCAACCTTTGGTGTAGCAAATACTCCAGCAACCACTTCACCATCAAATAGTAAGGAACCCAGCAGGTTAGCGTCAAGTTCAGTGACATCAGTGGTGTCAACAAATACAAAAACAATTTCAACGGACACACAGGGTGTGAAGTCAGTTGCCAATATAAGTAAACTTCCTGATGTCAAAGCTACACCCAAAGTGTCTGCTGCACGCACCAGCAAAGCAACAAAATCTTATGGACCAAGAAAAACAGTTGCAGCGACTCTCAAAGCTGCTGCTGCTGCGAAAGCATCCAATATCTCAGCTGATGCTGCAAAAACCAGTGTTAGTAACCCTATTCAACAAACATATCAGGCGACTTCTACAGCCGATGCTTCTGCTCCTTCTTCTGAGAAAAAGCTGGCAGCCAGTAATGCATCGAGATCTCAAGCAATATCCACACCAAGCGTCACAACTACAGTTCAAGCACCAGCATTATTCCATAGCGTGCTTAAAGATGCAATAATGAATGAACAAGGTGGTGCCATTGCTTCAACTCTACCAAGTACGAGTGCTACAGTAAAAAGTATCATCAGCACAACAAATGCTGCACCCAATCACAGCTTAAGAGGATCTCAGTCTGCGATTAGCGCTTCCTCTTGTAGCAAGCCTACAGGAATCAAAGAAACCACTCAAGTAACAACAGCTTTGCTTCATGGTGTCCAAGTGAGTCATTTACCACCAAGTGTGTCCCAGCAGGTACAAGGTCACAAGGCTCAGCCACAAATGCCAGGGTACCCCATTTCGTCAGGTGCCTTTGGCAGCCAAGCACCTCTGGTCACTACAAGTCAACAGCAGAATGTTGCCGCTGCCACCGTGGCTCAAAGTTCGGCTCAAACATCTGCTCCTGTGAGCATCTATGGACAGGCGCAAAATACGGCTGGCTCGTCCCAAATGCCATCCTTGCAGATCACAGCATCGCAAGCTCAGGGAGGTGTTTTCTTTCAAGGTAACGGAAATCAAGTATTCCAAATGAATGTGGATTCCAGCCAGCTGAAGGGCGCTTATCAACTTCATGGAGCTCTTTACCAAGGAGCTATTCCAGCAACATTTCTTGCCACAGCTAATATGAACAAAGCTGCACCATCTAATGCACCAGGAGGGATCCCTCATACGATGTACCCCACCAATCCCTACATGCTTGGCATTGTGATGCCTGCTGCCCTAACGCAATCTATGCCAAACCAGCCAGGTCAATCTGTACCAACAACAGCAACATCTCCATCAGCGACAGCTGCTGCCGCTGCAGCTGTTGCCGCAGCAGCCCCAGTAGCATCATACTCTTACAATAATCAAAATGCAGCAATCGCTGCAGCATTTGAGTCATTCGTCCCCATTGCACCAGCTGCATCTCCAAGGTTTTCCCAAACCTTGGCTCACTTAGCAAGTGCGTACACCCCATTTTTGCCAAGGGGTGCGGTCCAAGGCAACGCCCCAGTACAATTTGCTGCCGCACAGAGGATGGTATCGATGGGAACGATGCATCCTCAATCAGGTGGGAATGGTCAAATGGGGCAGACAGTTCTGAACCTTGGAGACTACACAGTTAAATATCCACTAAATACAGCGAAACCTGGATCATACGGTGGCCAATCGCCCACTGTTACTAGCGTAAGTCAAGCTAACACTCATCAACAACAGACAGCCGTCGTTGCTGCTATGCCGTATGTCGCCTTTGGCCAAGTCAACCATCCTCGATTTCCGTTTTCCGTGAATTTTGCAGCGCCAAGTGCCAGTACCACTCCGTCCGTGACGTCATCTTCGCCATCGCCAGCTTGTAGTTTCGTTACATCTGCTACTACTACTCCTCATCAACATGGGGCTGGAAATAACTCAGATTCCCACGCCCTGCTGGGGTATGTGGCGATGCCGTTTAGCACTAATTCAGGAAGTACGACTCACTCTTTGTCAGCTCCCACCCCACGTTCTGGCAGCGCGTTCTCTCCTCCCTCCAGTCACTCGGCCACAAGTCATAGTAGTCAAAGGATGAATGTATTAGGACCTGCTCCACACCTACCTACATGGTGTGGAGCTAAAAGTTTAACTGGAGCAACTAATCAACGGAGGTGCAGCACTCCTGAGAGTACAAGCTCAGGGGCTTGCAGTGTGGCTAATTCAAGTACTTTTTCTGTTCCATCAAGCAGAAGTAGCTGTATGGAAGTCAGTACTTCCTCTGTGACTGCGCCCAAAACACCAAGTTTCAGCCAGTCGCCCAGGCATCCGGGAGTTACGTCTCCCCTGAACTCACCACTGACTATGCTGCCTCCTAATCAGGGGCTATCTGCTTGCCGCGGGTCACCAAAGGGTGATTCACCCCTTTCAAGCGGTAGAAGCAACGCAGAAAGCGTACCATCTCGTTGTCAATCGTTAAGTGCCAATGAAAATCACCCGGCGAAAACGTCATCTGACGCATCTTGCGCTCTTAAGAGAACTTCTTATGGTGACTCTAGTGATCAATCCAAAAAGGCGAAATACGATGAGTCGGCGTATTATGAAGCGTATCCATTACTGGGTCTGAAGAGATCTTGTGAAGCCATAGAAGCTTACTGCAGCCCTGAGCGGGACGATGACGACGAGGAGGAGGACAATGAAATAGGTGATCCCACGGTGTCAAAAAACGATTCACCTTCCCCTGTAAACCACCAATCAGGGGAAGGAAATGTAAACAGCAAAAAATGTAGCAACTTAAACAACGGAAACGGCAGCAGAGGATTAGCTAAAAGCGACGATGAACCAGTTAGTGACAAGCGCCAATCTCACTCGGTGTACAACGGAGACGTGTCAGCCAATCAAAAGGAGAGATCACGAGAGCAAAGAGTGCAAATGGTGACTGAGAACGCGTTTTCTAATGTCAAGACGAATCCCTTGTCATCAAACACGCCTGATAGTCAAGAATGTCTGCGCGAGCCTTCCGTGCCCATTACAAGACCCCAGTTTGATATCGGTGATATTGTGTGGGCACAGGCTAGGGGACTGCCATCTTGGCCGGGCAAGGTCGTGGATGCAAGTGAGGTCGGGAAAGGAAGGCCTGATGATGGAAAGCGCTGGGTGATGTGGTTTGGTGACCATACATTCAGTCAAGTTGAAGTGGACAGACTCAAAACTCTATCGGAAGGACTCAGAACACTTGACGACAAAGCTCGTAAGAAAAAGTACAAAGCTAAAAAGGCAAGGATTGAGTTGGAACAAGCAATAAGTGAAGCTTTAGAGGCTCTCGAGGTGAGGGAACGTCTTCGAGGTAGACAAGCTTCCAGATCGAAAGCCAAAAAGAAACGCCTTAGATGA

Transcript

rna-Spis1871_mrna

ATCCAATATGGCGGTCTTTTTCTAGTAGAGAATTGTGTCATCACACATGTGGACATAGGTAGTTTGGCGTCACATTTTGAGCACTTATCGGTGTAAGGATCTAAAAGAGTTACAGCCATATCTATTTAGAGGGGTAATCTATTGTGGATGGTCACACTGAGCGTGCGGATTCGCTTTGAGCGCCACAAGAAGTTGTGTTTGAATACAGTTACCGTCGGCGAGTTCCCGCTACCGAAGCATCTATTGTTCGCTCAATGTCACGTTGTGGGATTCTTGGAGCCTTTGCTTGTACACTCGATTTAAGAGGATGAGATATTTTCATGGATTATCATGAGTGATCAAGGAATCAGTGAACAACCCAGCAATGGACCTAAATGCATTGAAATTCCACGAGGCTGGAGCCGGATTCTTGAAAATGGTTCCATTTTGTACATAAGCCCCAACAACAGCCGATTGAGGTCCTTAGAAAATGTGATTGAGTATCTCAAGACAGATGGGACCTGTAAATGTGGACTTGAGTGTCCCCTTTTCATTCACAAAGTGTTCAACTTTGATGCAAGAATTCCAAGTAAGCTAATTCCAGTGCACAGCAGAGCAGAACTTTCACAATCAGGCTGCAAACACTGTGTTATTGACTCAAACAACCCTCAGCAGCCATCAGAAGTTGCAGGAAATCAAGCCAGTGATGCTAAGCTGTCAGGATTTTCAGCAGTGGCCCCCAAAAGAGGTCCAGGAAGACCCCGCAATCCCTTATCCAAGTCACGGAGAGTTGCTGTACGAAAGCATGACCTTGACAGGTCAACCTCACCACTTCATAATATCCCTCTTCCTGTTCCAAGCTCCATTGCTAACAGTCCTGTCCAGAGTGTTCCAGCCAACATTGCAGTTGAACAGGGCCCCTTGCCAAGCTTTGCGACCATTGTGAGCAGTTCAAAACTCTTTAACCCAGGAGCAGCCCTGGGGAATACTAAGTTGTCAAGTAGTACTGTAACAAGTGGGATAAGCAGCTCTCCTATAGCAGCAGTGTCACTACTTCCATCAAAGACAGCTACTACAACAGCCAATGTTAGCTCAGCTCCAAGTCACAGTGTCACAGCAACTACATCAGCTGTTACCACTTTGGCTACAATGGGACAGAGTGTAGTGGAAGTTACTAAGACTGCAGTCCCTGTTTCAACTACAGTAGTTGTCACTCATCAGCAAACAGCAGTAGCTGCAGCATTACAACCGACTGGAAGTCAAACAGAAAATACTCTGCCAAAGAGCACCAGGTCCTCAACCTTTGGTGTAGCAAATACTCCAGCAACCACTTCACCATCAAATAGTAAGGAACCCAGCAGGTTAGCGTCAAGTTCAGTGACATCAGTGGTgtcaacaaatacaaaaacaatttcaacgGACACACAGGGTGTGAAGTCAGTTGCCAATATAAGTAAACTTCCTGATGTCAAAGCTACACCCAAAGTGTCTGCTGCACGCACCAGCAAAGCAACAAAATCTTATGGACCAAGAAAAACAGTTGCAGCGACTCTCAAAGCTGCTGCTGCTGCGAAAGCATCCAATATCTCAGCTGATGCTGCAAAAACCAGTGTTAGTAACCCTATTCAACAAACATATCAGGCGACTTCTACAGCCGATGCTTCTGCTCCTTCTTCTGAGAAAAAGCTGGCAGCCAGTAATGCATCGAGATCTCAAGCAATATCCACACCAAGCGTCACAACTACAGTTCAAGCACCAGCATTATTCCATAGCGTGCTTAAAGATGCAATAATGAATGAACAAGGTGGTGCCATTGCTTCAACTCTACCAAGTACGAGTGCTACAGTAAAAAGTATCATCAGCACAACAAATGCTGCACCCAATCACAGCTTAAGAGGATCTCAGTCTGCGATTAGCGCTTCCTCTTGTAGCAAGCCTACAGGAATCAAAGAAACCACTCAAGTAACAACAGCTTTGCTTCATGGTGTCCAAGTGAGTCATTTACCACCAAGTGTGTCCCAGCAGGTACAAGGTCACAAGGCTCAGCCACAAATGCCAGGGTACCCCATTTCGTCAGGTGCCTTTGGCAGCCAAGCACCTCTGGTCACTACAAGTCAACAGCAGAATGTTGCCGCTGCCACCGTGGCTCAAAGTTCGGCTCAAACATCTGCTCCTGTGAGCATCTATGGACAGGCGCAAAATACGGCTGGCTCGTCCCAAATGCCATCCTTGCAGATCACAGCATCGCAAGCTCAGGGAGGTGTTTTCTTTCAAGGTAACGGAAATCAAGTATTCCAAATGAATGTGGATTCCAGCCAGCTGAAGGGCGCTTATCAACTTCATGGAGCTCTTTACCAAGGAGCTATTCCAGCAACATTTCTTGCCACAGCTAATATGAACAAAGCTGCACCATCTAATGCACCAGGAGGGATCCCTCATACGATGTACCCCACCAATCCCTACATGCTTGGCATTGTGATGCCTGCTGCCCTAACGCAATCTATGCCAAACCAGCCAGGTCAATCTGTACCAACAACAGCAACATCTCCATCAGCGACAGCTGCTGCCGCTGCAGCTGTTGCCGCAGCAGCCCCAGTAGCATCATACTCttacaataatcaaaatgcaGCAATCGCTGCAGCATTTGAGTCATTCGTCCCCATTGCACCAGCTGCATCTCCAAGGTTTTCCCAAACCTTGGCTCACTTAGCAAGTGCGTACACCCCATTTTTGCCAAGGGGTGCGGTCCAAGGCAACGCCCCAGTACAATTTGCTGCCGCACAGAGGATGGTATCGATGGGAACGATGCATCCTCAATCAGGTGGGAATGGTCAAATGGGGCAGACAGTTCTGAACCTTGGAGACTACACAGTTAAATATCCACTAAATACAGCGAAACCTGGATCATACGGTGGCCAATCGCCCACTGTTACTAGCGTAAGTCAAGCTAACACTCATCAACAACAGACAGCCGTCGTTGCTGCTATGCCGTATGTCGCCTTTGGCCAAGTCAACCATCCTCGATTTCCGTTTTCCGTGAATTTTGCAGCGCCAAGTGCCAGTACCACTCCGTCCGTGACGTCATCTTCGCCATCGCCAGCTTGTAGTTTCGTTACATCTGCTACTACTACTCCTCATCAACATGGGGCTGGAAATAACTCAGATTCCCACGCCCTGCTGGGGTATGTGGCGATGCCGTTTAGCACTAATTCAGGAAGTACGACTCACTCTTTGTCAGCTCCCACCCCACGTTCTGGCAGCGCGTTCTCTCCTCCCTCCAGTCACTCGGCCACAAGTCATAGTAGTCAAAGGATGAATGTATTAGGACCTGCTCCACACCTACCTACATGGTGTGGAGCTAAAAGTTTAACTGGAGCAACTAATCAACGGAGGTGCAGCACTCCTGAGAGTACAAGCTCAGGGGCTTGCAGTGTGGCTAATTCAAGTACTTTTTCTGTTCCATCAAGCAGAAGTAGCTGTATGGAAGTCAGTACTTCCTCTGTGACTGCGCCCAAAACACCAAGTTTCAGCCAGTCGCCCAGGCATCCGGGAGTTACGTCTCCCCTGAACTCACCACTGACTATGCTGCCTCCTAATCAGGGGCTATCTGCTTGCCGCGGGTCACCAAAGGGTGATTCACCCCTTTCAAGCGGTAGAAGCAACGCAGAAAGCGTACCATCTCGTTGTCAATCGTTAAGTGCCAATGAAAATCACCCGGCGAAAACGTCATCTGACGCATCTTGCGCTCTTAAGAGAACTTCTTATGGTGACTCTAGTGATCAATCCAAAAAGGCGAAATACGATGAGTCGGCGTATTATGAAGCGTATCCATTACTGGGTCTGAAGAGATCTTGTGAAGCCATAGAAGCTTACTGCAGCCCTGAGCGGGACGATGACGACGAGGAGGAGGACAATGAAATAGGTGATCCCACGGTGTCAAAAAACGATTCACCTTCCCCTGTAAACCACCAATCAGGGGAAGGAAATGTAAACAGCAAAAAATGTAGCAACTTAAACAACGGAAACGGCAGCAGAGGATTAGCTAAAAGCGACGATGAACCAGTTAGTGACAAGCGCCAATCTCACTCGGTGTACAACGGAGACGTGTCAGCCAATCAAAAGGAGAGATCACGAGAGCAAAGAGTGCAAATGGTGACTGAGAACGCGTTTTCTAATGTCAAGACGAATCCCTTGTCATCAAACACGCCTGATAGTCAAGAATGTCTGCGCGAGCCTTCCGTGCCCATTACAAGACCCCAGTTTGATATCGGTGATATTGTGTGGGCACAGGCTAGGGGACTGCCATCTTGGCCGGGCAAGGTCGTGGATGCAAGTGAGGTCGGGAAAGGAAGGCCTGATGATGGAAAGCGCTGGGTGATGTGGTTTGGTGACCATACATTCAGTCAAGTTGAAGTGGACAGACTCAAAACTCTATCGGAAGGACTCAGAACACTTGACGACAAAGCTCGTAAGAAAAAGTACAAAGCTAAAAAGGCAAGGATTGAGTTGGAACAAGCAATAAGTGAAGCTTTAGAGGCTCTCGAGGTGAGGGAACGTCTTCGAGGTAGACAAGCTTCCAGATCGAAAGCCAAAAAGAAACGCCTTAGATGACGACGCAAGTAGCAATTGAATCATATTTGAACTATCTTTAAGTGGGCCTGATAAAATTTGTGTTTATATCATAGACAAGTAGTAATATATTACTGGTAATAAACCAAACACGTAAGCTAAGTACAGAGGAAGTTAGTAGTTATGAAGAACTCATTTGTTGCAAATAACTTTTTATCTTAAGAGCTAATTTTTTGGCTGATTAGGAAGAAAAGTCAACTCTCTTCTCCATGATGAATTTCTTAGAAATTAATCATAATTCCGCCATCTTTTATAGACTAAATAAATGCAGGAAAATTGAATCGATACTTAACCATTCCAACCAGGGCCATGTGTACAGGAAACTAAACAAATTGAAGCAATAACGTGAAGCCAACCCCACGTAATTTTATTGGCTGAGAGGACGATAGCCAATTACCCACGGTTAGAAAAACTAGGTCGAGTATATGAAGTCGAGCCTTTAATTTAAAACGCAATCAGACTTTCTTTCATGGTTTGACTTCTCTCTCTgggttttctcttttattttttgtcgtGTTGCGACAACTTgctattattattgtcattattacttttattattaccattattattattattat

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00855 all species →	PWWP	PWWP domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001739 all species →	Domain	Methyl-CpG DNA binding	Interproscan
IPR000313 all species →	Domain	PWWP domain	Interproscan
IPR016177 all species →	Homologous_superfamily	DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16112 all species →	METHYL-CPG BINDING PROTEIN, DROSOPHILA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0010369 all species →	Cellular Component	chromocenter	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23219	MBD5; methyl-CpG-binding domain protein 5	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.