Gene detail

Detailed information of PFX33342.1 in Stylophora pistillata

Genomic Location: Spis.scaffold13:886603...907351
NR annotation: no NCBI-NR hit recorded
Species abbreviation SPIST · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FHOD3

ATGGCGTTAACTTGTAAAGTTCAGTATTTAGATGACACCGATCCTTTCGCCAGTACAAATTTTCCTGAACCCACAAGGCCTCCAACATACACATTCCATCTGAATATACCACTTTTTCAGCAAATCGGCGGACTCCATCGGCTGTTGTCTGCTCCGCATAGCATCGACGATGTGGCGCTGCAGCTGTCCCACAATGGATGTTATTTGGATTTGGAAAGCTCCCTGGAGGAGCAAGCCGATTTATTGGAAGGCTTTCTAGACAGTCGTAAAAACACAATAATTCTACGGACGGCTATGTCGGTTCGCGTGCACAACTGTATAGCTAAACTACTTGCAGCATCGGGAAGAGAGCTTAGGAGAGCCTTGTTTTCATTGAAGCAAATTTTTCAGGATGATAAGGATCTTGTGCATGAGTTCGTAAACTCCGATGGATTGAGTGCACTGATATCAGTTGGACAGGATGCTGATCAAAACTATCAGAACTACATCCTTAGAGCAATTGGTCAGATAATGCTGTATGTCGATGGAATGAATGGTGTTATCAACCACAGTGACACTATACAGTGGCTTTACTCTCTCACAGCATCTAGGTTCCGTCTTGTGGGAAAAACTGCACTTAAACTTCTTCTTGTGTTCGTGGAGTATACAGAATCTAACTCAAGAGTGTTGTATGAGGGTATTCAAGCTGTAGATAGTAATCAAGGTGTCAGAGAATGGGCTGAAATCATAGGAATTATGACAGATAAAGAAACTCAAGGAGATGAAGAGGTTCTAATCTATGCTATGACATTAATTAATAAGGTTTTGTATGCAACTCCAACTCAAGATGGGTTTTATGATATAACTGATGCATTGGAAGAACAAGGAATGGAACAGATTATAAAGATGCATCAAAAACGCACTGGAACAAATATTGACTTGATGGAACAGTTTAACATTTATGAGACGGCACTCCGAATTGAAGATGGTGATGAAGAATTCCCTGCGTTTGGAACCTCTCCATCAATAAGACAAAGAAGAAGGGCAACATCGTATGCTACAGGTGACAGAAGACGGAGTCGACGACATAACTCAGTCAGCCAAATTGACGTATCATCCATCAAAAAGGACAACCTCCTGGCTCCTCCAGGAACCAAAATCAGGGAGGGCTCGATGCATAAGGTTGCCAGTGCACCTAATGTGGGTACCGCTGTGAAAGTGGAGCCCCCTTCGTCGCCTGTTAAGACATCAGCAAGTACAACACCATCATCGTCAACAGAGTCAGAATTGGATGAGAAAACTAAAAATCGTTTAGCAAGAAAGGAGCGCCGCGCCGCCAGACGAGCTGCCCTGGGAATAGCTGAACCAGAAACAGAAGCGTCCATATCTAGTAGGAATGACAGAGGCAGACCGCGATCTGACAGCAAAAACAACACAAATGACAGCAACCACCTGGAGGTGTCTTCACCACCTAGCGACAGAACACGGTCACCTCGTTCGTCTCCTCGATCATCGCCACGCCCTTCCCCTAGAAACTCCCCCACACTTGGCCGGAGGAGATTCAAGTTTGAGGAGCCACAAGTAGAGGAGAAACCAGGTTATAAATCAAAAGGGCATAGAGAAGAAACTCCTCGAACGCACGAAGATCTAGGAAGACAACCGAAGGCTGAAGTGTTGAGTCACAGGAAACAACTCACAGAGCACAAAGAAGAAAAATCTTCGCATAGAAAGGATTTAAATGTTTCGACAGTGAGTAAGAAAAAGACTCCTGATGTAAAGAGAGACAGCAGTAGGGAATGTTTGACAAACAACGTAGATATTAATGGATCTTCAGATCAAAGAACTAGTGATGAAAGTGAGGACACTGACGATAAACTTGGTTCTAGCATGGACGATTTGCATAATAATAACGACCATATAGAAACTGTACGGTCCTCGGAAGAACATATCAACAGACGCGCTAGCTCAGGCAGTTCTTCAAATGATGGAAGGCGACCCAGTATTGTAGATCCGGAAAAACGATCGAGTGTTTGTGAAGGTTTTCCCGGATTCCCCAATAAAAAGATGATGTTATCCATGTTATACGGACAAAAGTCCGTAGATGATGGGGATAGGAAAAACATGGATGGTACTTTGTCTCCTGGAGGAGATTCAGTGCAGGAAAGGAAGCAGCAGCTGATGTCCGGAGGCAACGATGAAGCCGGGCAGAGGCCATCAGAATTACTTGCAGTTGATCATTTAGTTTCTGAGGCTGTTAAAAGATTGAGTGGATGTGTTGAGGTCGACGAGGAAAATGAGACACCCTCTAGTACTCCGGAGGGAAATTTTGAAGGACTCGTGGAGAAAGCAAAGTCTGGGCTTACAAAACAGCCAACCATTGACAAACCTGATCCGGCTGCGGAGGAGGAAGCTAGAAAACAGGAAGAACTACGGAAGAAACAAGAGGAGGAACGTAAAAGACAGGAGGAGGAAGCTGCCAGAAAAGCCGCCGAAGAAGCTGCTATACAAAAGGAACTAGAATGGGAGAAAATGATCATACTGAAAAGGAAACTCATTGTAAACGAATTCAACTTCACTGAGTTAGAGGATGATGAAGATGAACTTTTGGACAGTACGTCTTCTAAAGCAGATGAAACAGATGCCCATCCTCATCAGGGAGTTCCCATGTTTGGAATACCTGTACCCCCACCCCCCATTGCTGGTGGGGCCCCGCCTCCCCCGCCGCCCCCTGGAGGTGCTGCTCCTCCTCCCCCTCCCCCGGGACTACCCAAGGCACCCTTTTTAAATGATTCTAATCCGAAGAAAAAATTGGTTCGTTTATTTTGGCAAGAGGTTAAGAATTCTCCTCTTATAAACGGTGTTAACAAGACAATCTGGGGAAGTATTGATTCAGTGGATGTTGACACCAAAAAACTGGAACATTTGTTTGAGAACAAGACGACTGCTAAAGTAAAGAAATGCGAGGGGGATGACAAAGACAAAAAGAAGGAAATAGTTGTTCTGGAAATGAAGCGATCTCAAGCGATTAACATCGGGTTGACGAAGTTACCACCGATCAGAGCTTTGAAGCAAGCTATTTTGGCGATGGACAGCGCCGTGATCGATAGAGAGGGAATTGATAAATTGCTCCAGTTGCAACCTACGGTGGAAGAGAAAACTAAGATACAGGAGGCGCACATGTCAAACCCAGACGTGCCTTTGGGAACAGCTGAGCAGTTCTTGTTAACAATGTCTTCCATAAACGAACTGGCGCCGCGTTTGCATCTGTGGGCCTTTAAACTTGACTATGATCAGCTAGAAAGGGAAGTAGCGGAGCCTTTCATGGACTTAAAGGAGTCTGTACAAGAACTGCGTAACAACGAGACCTTCAAGCACATTTTGGCCACTCTTCTTGCCATAGGAAACTTTTTAAATGGAAAAAAGGTGAAGGGATTCCAGTTGGACTATCTGGCTAAAGTGCCAGAAGTAAAAGACACAGTGCACAAGCAGTCATTATTATATCACTTGTGTTGTATGGTAATGGAGAAATTTCCAAACTCCACTGATTTTTACAGCGACTTGGGAGCCTTACATCGCTCGTCCAGGGTGGATTTTGATGTGGTAATGGATAACTTGAAGAAACTGCGTGAAAACTGTAAAAAGTCTTGGGAATATTTGAGTATTGTTGCCAAACATGACAGTACCAAACAACTCAAAAGCAAAATGAGTGAATTCTTAGCAGACGCTCAAGAGCGTAGCACCATCCTCAAAGTTGTCCACAGAAGGGTAATTAACAGATTTCACAAGATGCTGTTGTACCTTGGGCTGCAGTCAAGCGTAGCGAACAAGACCAAGGTCAATGAGTTTTGCAAAATTATAAGTGAGTTCTCCCTGGAATACCGAACCACCAGGGAACGTGTGATCCAGATGAAAAAGAAGAAGGAGAACATGAGAGAACGTAGCAAGACGAGAGGAAAGCTTATAACAGAAACAGAGTCTTACTCAGTAGCCGCCAAGGTATCCGCTGAAGAAAACATAGAAGCATTCCGTAAAGCTCTCATATCCAATGGAGATGAAACGGATAACGCGAGAGAGAAGTTAAAAAGCGCCACACTGCCTGGAACACGGAACAGGATCAAAAGTGCTGGTCCCTCTCGCACTAATTCAGGGGTACAAACACTAGATGAATTTCCAGACGACACCACTGATGAAGTTATCAACACACTGGCAAAGTCGGCGACAGTTCCGGATTCAAGAACACGGCAGGGTAGAAAGCGACCCAGGGCTTCCAATAGAAAATCAGGTCAGGACGTAACACGAAGGACGCTGAAGAGTGGAATAAGTCCCGAAGATATGGAAAAGCTCACTAAACAGTATTTGAATAATATGGAAACGAAATGA

Transcript

rna-Spis1812_mrna

AGTTATCTAGAGCGCATGCGTTCAACAACTCTACAGAATCTTCCGTCAAAATGGCGTTAACTTGTAAAGTTCAGTATTTAGATGACACCGATCCTTTCGCCAGTACAAATTTTCCTGAACCCACAAGGCCTCCAACATACACATTCCATCTGAATATACCACTTTTTCAGCAAATCGGCGGACTCCATCGGCTGTTGTCTGCTCCGCATAGCATCGACGATGTGGCGCTGCAGCTGTCCCACAATGGATGTTATTTGGATTTGGAAAGCTCCCTGGAGGAGCAAGCCGATTTATTGGAAGGCTTTCTAGACAGTCGTAAAAACACAATAATTCTACGGACGGCTATGTCGGTTCGCGTGCACAACTGTATAGCTAAACTACTTGCAGCATCGGGAAGAGAGCTTAGGAGAGCCTTGTTTTCATTGAAGCAAATTTTTCAGGATGATAAGGATCTTGTGCATGAGTTCGTAAACTCCGATGGATTGAGTGCACTGATATCAGTTGGACAGGATGCTGATCAAAACTATCAGAACTACATCCTTAGAGCAATTGGTCAGATAATGCTGTATGTCGATGGAATGAATGGTGTTATCAACCACAGTGACACTATACAGTGGCTTTACTCTCTCACAGCATCTAGGTTCCGTCTTGTGGGAAAAACTGCACTTAAACTTCTTCTTGTGTTCGTGGAGTATACAGAATCTAACTCAAGAGTGTTGTATGAGGGTATTCAAGCTGTAGATAGTAATCAAGgTGTCAGAGAATGGGCTGAAATCATAGGAATTATGACAGATAAAGAAACTCAAGGAGATGAAGAGGTTCTAATCTATGCTATGACATTAATTAATAAGGTTTTGTATGCAACTCCAACTCAAGATGGGTTTTATGATATAACTGATGCATTGGAAGAACAAGGAATGGAACAGATTATAAAGATGCATCAAAAACGCACTGGAACAAATATTGACTTGATGGAACAGTTTAACATTTATGAGaCGGCACTCCGAATTGAAGATGGTGATGAAGAATTCCCTGCGTTTGGAACCTCTCCATCAATAAGACAAAGAAGAAGGGCAACATCGTATGCTACAGGTGACAGAAGACGGAGTCGACGACATAACTCAGTCAGCCAAATTGACGTATCATCCATCAAAAAGGACAACCTCCTGGCTCCTCCAGGAACCAAAATCAGGGAGGGCTCGATGCATAAGGTTGCCAGTGCACCTAATGTGGGTACCGCTGTGAAAGTGGAGCCCCCTTCGTCGCCTGTTAAGACATCAGCAAGTACAACACCATCATCGTCAACAGAGTCAGAATTGGATGAGAAAACTAAAAATCGTTTAGCAAGAAAGGAGCGCCGCGCCGCCAGACGAGCTGCCCTGGGAATAGCTGAACCAGAAACAGAAGCGTCCATATCTAGTAGGAATGACAGAGGCAGACCGCGATCTGACagcaaaaacaacacaaatgaCAGCAACCACCTGGAGGTGTCTTCACCACCTAGCGACAGAACACGGTCACCTCGTTCGTCTCCTCGATCATCGCCACGCCCTTCCCCTAGAAACTCCCCCACACTTGGCCGGAGGAGATTCAAGTTTGAGGAGCCACAAGTAGAGGagaaaccAGGTTATAAATCAAAAGGGCATAGAGAAGAAACTCCTCGAACGCACGAAGATCTAGGAAGACAACCGAAGGCTGAAGTGTTGAGTCACAGGAAACAACTCACAGAgcacaaagaagaaaaatcttCGCATAGAAAGGATTTAAATGTTTCGACAGTGAGTAAGAAAAAGACTCCTGATGTAAAGAGAGACAGCAGTAGGGAATGTTTGACAAACAACGTAGATATTAATGGATCTTCAGATCAAAGAACTAGTGATGAAAGTGAGGACACTGACGATAAACTTGGTTCTAGCATGGACGATTTGCATAATAATAACGACCATATAGAAACTGTACGGTCCTCGGAAGAACATATCAACAGACGCGCTAGCTCAGGCAGTTCTTCAAATGATGGAAGGCGACCCAGTATTGTAGATCCGGAAAAACGATCGAGTGTTTGTGAAGGTTTTCCCGGATTCCCCAATAAAAAGATGATGTTATCCATGTTATACGGACAAAAGTCCGTAGATGATGGGGATAGGAAAAACATGGATGGTACTTTGTCTCCTGGAGGAGATTCAGTGCAGGAAAGGAAGCAGCAGCTGATGTCCGGAGGCAACGATGAAGCCGGGCAGAGGCCATCAGAATTACTTGCAGTTGATCATTTAGTTTCTGAGGCTGTTAAAAGATTGAGTGGATGTGTTGAGGTCGACGAGGAAAATGAGACACCCTCTAGTACTCCGGAGGGAAATTTTGAAGGACTCGTGGAGAAAGCAAAGTCTGGGCTTACAAAACAGCCAACCATTGACAAACCTGATCCGGCTGCGGAGGAGGAAGCTAGAAAACAGGAAGAACTACGGAAGAAACAAGAGGAGGAACGTAAAAGACAGGAGGAGGAAGCTGCCAGAAAAGCCGCCGAAGAAGCTGCTATACAAAAGGAACTAGAATGGGAGAAAATGATCATACTGAAAAGGAAACTCATTGTAAACGAATTCAACTTCACTGAGTTAgaggatgatgaagatgaactTTTGGACAGTACGTCTTCTAAAGCAGATGAAACAGATGCCCATCCTCATCAGGGAGTTCCCATGTTTGGAATACCTGTACCCCCACCCCCCATTGCTGGTGGGGCCCCGCCTCCCCCGCCGCCCCCTGGAGGTGCTgctcctcctccccctcccccggGACTACCCAAGGCACCCTTTTTAAATGATTCTAATCCGAAGAAAAAATTGGTTCGTTTATTTTGGCAAGAGGTTAAGAATTCTCCTCTTATAAACGGTGTTAACAAGACAATCTGGGGAAGTATTGATTCAGTGGATGTTGACACCAAAAAACTGGAACATTTGTTTGAGAACAAGACGACTGCTAAAGTAAAGAAATGCGAGGGGGatgacaaagacaaaaagaaggaaatagtTGTTCTGGAAATGAAGCGATCTCAAGCGATTAACATCGGGTTGACGAAGTTACCACCGATCAGAGCTTTGAAGCAAGCTATTTTGGCGATGGACAGCGCCGTGATCGATAGAGAGGGAATTGATAAATTGCTCCAGTTGCAACCTACGGTGGAAGAGAAAACTAAGATACAGGAGGCGCACATGTCAAACCCAGACGTGCCTTTGGGAACAGCTGAGCAGTTCTTGTTAACAATGTCTTCCATAAACGAACTGGCGCCGCGTTTGCATCTGTGGGCCTTTAAACTTGACTATGATCAGCTAGAAAGGGAAGTAGCGGAGCCTTTCATGGACTTAAAGGAGTCTGTACAAGAACTGCGTAACAACGAGACCTTCAAGCACATTTTGGCCACTCTTCTTGCCATAGGAAactttttaaatggaaaaaagGTGAAGGGATTCCAGTTGGACTATCTGGCTAAAGTGCCAGAAGTAAAAGACACAGTGCACAAGCAGTCATTATTATATCACTTGTGTTGTATGGTAATGGAGAAATTTCCAAACTCCACTGATTTTTACAGCGACTTGGGAGCCTTACATCGCTCGTCCAGGGTGGATTTTGATGTGGTAATGGATAACTTGAAGAAACTGCGTGAAAACTGTAAAAAGTCTTGGGAATATTTGAGTATTGTTGCCAAACATGACAGTACCAAACAACTCAAAAGCAAAATGAGTGAATTCTTAGCAGACGCTCAAGAGCGTAGCACCATCCTCAAAGTTGTCCACAGAAGGGTAATTAACAGatttcacaAGATGCTGTTGTACCTTGGGCTGCAGTCAAGCGTAGCGAACAAGACCAAGGTCAATGAGTTTTGCAAAATTATAAGTGAGTTCTCCCTGGAATACCGAACCACCAGGGAACGTGTGATCcagatgaaaaagaagaaggagaacATGAGAGAACGTAGCAAGACGAGAGGAAAGCTTATAACAGAAACAGAGTCTTACTCAGTAGCCGCCAAGGTATCCGCTGAAGAAAACATAGAAGCATTCCGTAAAGCTCTCATATCCAATGGAGATGAAACGGATAACGCGAGAGAGAAGTTAAAAAGCGCCACACTGCCTGGAACACGGAACAGGATCAAAAGTGCTGGTCCCTCTCGCACTAATTCAGGGGTACAAACACTAGATGAATTTCCAGACGACACCACTGATGAAGTTATCAACACACTGGCAAAGTCGGCGACAGTTCCGGATTCAAGAACACGGCAGGGTAGAAAGCGACCCAGGGCTTCCAATAGAAAATCAGGTCAGGACGTAACACGAAGGACGCTGAAGAGTGGAATAAGTCCCGAAGATATGGAAAAGCTCACTAAACAGTATTTGAATAATATGGAAACGAAATGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02181 all species →	FH2	Formin Homology 2 Domain	Family	Interproscan
PF18382 all species →	Formin_GBD_N	Formin N-terminal GTPase-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015425 all species →	Domain	Formin, FH2 domain	Interproscan
IPR042201 all species →	Homologous_superfamily	Formin, FH2 domain superfamily	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR014768 all species →	Domain	Rho GTPase-binding/formin homology 3 (GBD/FH3) domain	Interproscan
IPR041387 all species →	Domain	FHOD1, N-terminal GTPase-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45920 all species →	FORMIN HOMOLOGY 2 DOMAIN CONTAINING, ISOFORM I	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005856 all species →	Cellular Component	cytoskeleton	Interproscan
GO:0030866 all species →	Biological Process	cortical actin cytoskeleton organization	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23939	FHOD3, FHOS2; FH1/FH2 domain-containing protein 3	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.