Gene detail

Detailed information of PFX33434.1 in Stylophora pistillata

Genomic Location: Spis.scaffold12:71978...79978
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-Spis1650_mrna

ACTGACTGTCGGTAAGAAATACCGGTGTAACATCATGGCAGAGAAAGAGATCGCTGTTGCTGAGCCCCAAAAGAAGCAAACGAGAAGTACCTCTGGTGTAAAGAACTTCCTTGCTGGAGGATTTGGAGGAATATGTTGCGTAGTGTCTGGCCATCCACTAGACACGATCAAGGTTTGCCTTCAAACAATGCCCCAACCAGAGCCAGGGCAGAAGCCACTGTTCACAGGCACCCTTGACTGTGCACTTAAAACAGTGAGAAAGGAGggaGTTCTTGGTTTATACAAAGGAATGGCAGCTCCTGTAGTGGGTGTGGCACCAATATTTGCCATCTGTTTCTGGGGATTTAACATGGGCAAAAAACTGCAACTCAAGAATCCTAATGATGAACCAACgtattttcaaattttgacatCAGGTTTCTTTGCTGGAGTTTGTACTACAGTTATTATGGCTCCAGGAGAAAGAATAAAATGTCTTTTACAAATTCAGCAAGCTAGTGGTGCTGAAAAGAAATATGCTGGTCCAGCTGATGTGGTGAAGAAGCTTTACAAACAGAGTGGAATCCGTGGAGTGTACAAAGGAACATGTGCAACTTTATTGAGAGATGTACCAGCTACAGGGATGTACTTTGCATCTTATGAGTTTCTCTTAAATGCACTTACTCCAGAGGGAAAGTCGCGCAAAGATGTTGGAGCATTGTCTATTCTCTGTGCTGGAGGTGTGGCAGGCATGGCGAACTGGAGTGTTGGTATTGCTCCAGATGTACTCAAGTCTCGTCTGCAAACAGcACCCGAAGGAACTTATCCAAATGGCGTTAGGGATGTTTTTAGACACATGATGCGCGAGGAAGGACCTGGGGCGCTTTTTAGAGGCCTGACTCCTGTTATGCTCAGAGCTTTCCCAGCTAACGCGGCTTGTTTCCTTGGATTTGAATTAGCCATGAAATTCTTCGATTGGATTGCTCCGGATTGGTGATGATTGGAAACCAACGTGGACATATCAGCTGTTGAGAATATTCTGCACgtgctaaagaaaaaaaatgtcgaGCGAGAAATTTTAGGTTTTTGTCGTGACGAATTGTTTCTCTGAAGTAGATCACTACATGAATTTCATCTACAAACTAGAAATAATTCCATCGACGATAAGGCCTTGACTATTTTACTTAACTACAAATTAACCACTTAAAAGTAAGCACTTTGTAGGGGAAGCCTTTCGGAACAAAAGTCTTTTTCTCGATAGAAGTGCACTGATTTTATTTCTATGTTTCAgtaaaattcgaaaaaaaattgttaagtaTCTAAAGAaatcttatttatttaacttcttttttctaAGAAATCTGTGTCTCTTAGACACTACATTCTATTCATTAATATGTAACACAAGTGATTTAATTTAGAGCAAATTGCTCTTCAATCACGTAGCTGCCCAAAAATACGTGTCTcgtgtgatatttttatttgataGTTGGCAAACCTGGACTTTTGTCAGACTTTTGTCTAAATTTGTGAAGTTCTACTTTGCACCTACAAAGGTATAAATTGTGAAACTTAGTCTTTTATTTAAAGAACACCTTTCATCCCAGGAGAATACTTCAGAAGTAAAAGACAGTTTTAAGTAAATGGTCTGAAAATTGTGATTCATTAATTCCCATAATCTGGAGACTCTGGATGTGAATGAAAATCACAAGCTTTAAATTGTTAAGGCGATGTGCCAAACAACCATTTGgggaatttttcattttggatTAACTTAAAAACAGAATAACACCTCACATACTGAAAAGCTTCATGAAGGTGTTGGTTAGCATGGTAACCAAGACTAGTACTAAGCAAAGCTATTAAACCAATATTACCAGTCCCATCTATTAACTATGATATTACTGAGCAATTCTGTGACTCGGGCGAACAGTTGTCTTTTCCTTCCTCTGGCGACTGAAGCTTCTCGTTGATTGGTTTTTGTTCTCCTTGTACAATGTTACTTTGAAATCTCTCTTTAGTTCTTTTCTGTTCTTCTTTACTCCTCTCAATCACTTTTACGAGCGTATTGAACGCAGTTTCAAATTCCCGATATGGCTTTAAAGTCCCTACATTTGAGAAGCTTAGAGAATTTTCCATGTGTTGTTGCGTTGAAGATTTAGAATCTATTGGAG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00153 all species →	Mito_carr	Mitochondrial carrier protein	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018108 all species →	Repeat	Mitochondrial substrate/solute carrier	Interproscan
IPR023395 all species →	Homologous_superfamily	Mitochondrial carrier domain superfamily	Interproscan
IPR050567 all species →	Family	Mitochondrial Carrier	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45624 all species →	MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005740 all species →	Cellular Component	mitochondrial envelope	Interproscan
GO:0006810 all species →	Biological Process	transport	Interproscan
GO:0006839 all species →	Biological Process	mitochondrial transport	Interproscan
GO:0015227 all species →	Molecular Function	acyl carnitine transmembrane transporter activity	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:1902603 all species →	Biological Process	carnitine transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15109	SLC25A20_29, CACT, CACL, CRC1; solute carrier family 25 (mitochondrial carnitine/acylcarnitine transporter), member 20/29	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.