Gene detail

Detailed information of PFX33463.1 in Stylophora pistillata

Genomic Location: Spis.scaffold12:1249804...1257022
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-Spis1745_mrna

GCGAAAGTCAAAGCGTGTTTGTACTCCATTTATTTCGCTGTTTTATTTCTACTGTTGGCCTTGATTCCTCTATAAATAGTCTTACTGGGTTTTCTGTCGTTGTTTGATGCATCTAGTTTGTTTTGGTAAGGATCTGACTTTTTTAAAATGCCCGCGCCGCGCTCGAAGAGATATGAATCAGAGTACTTTTCACATTACAAGCAATTTGAGGCTAAACGTCCTGATACAGTTAAGGGTGAAGTAACAAGATCAGTGACCAAGAGCAACATGTACAGTAATGGTTCAACACCAAGGGCAGGCCTACAGTCCAGTAAGCTGGGTACTATTCATGAACCTccacttcaaagaaaaagaattgtgCCATATGAAAAGAACCACAACATCTTCGCAACTTTTACTGTTAAAGAGCAGAATGATAGAGACTGGTTAAAGTCTGGTGGAGAATTGCACAGGTCCCGTTCATATCACAGACAGCACAAAGAGgaaaaaagtACAAAGGCTGCAAGAAGTTCAGTATTAAACAGAAGTGAAACACCAATCCTTGCAGCtgaaagaaagatttttcaTGATCAAGAGCAGCATGGAAACAGAAAGCAGCCAGTTTATGTGCCAGACAGAATCAACAGGAAAAGCACTTATAAACTGGATTATGTGGATTATGAGAAACAATCTAAGTCACCTAAAAAGAGCAAACCCAGAAAACAGCAGAGTCCACCAAAGGTAGTGGGGGGAAAGAAAGGAGATGTCAGCCCAGATCGCCTTCCACCTGCTGGGATCAGAAGAGCCACAAGTATTGGTGACACACGACTTTTAAGGCCTTCAGAAGATTGCCAGTACTTAAGGTCACCAGAGCGCCaacaaaaAGTTTTTGATTCAGAGTATTCAAGCCGTTTTGTTCAGCCAACAAAGTTCAAATACGTAGATGGATTATGGATAGAAACTCCCATCAGCACGGAGGCAACTCATAACGTAAAGgataAACAGAAGGATACGCCAGATTGGTTTAATCAGGTTCTTCATCGTCGTAATGAGGCCTATGGTTACGCGCACAATGCGCGAGGAACGCATTTCTCTCGCGAGAGCCTTGATGAAATCAACAGAGAGCAGCAGGTAGAACGCGCAGGTTCTCTTTCCTCAGCTGAGGAAAGGAGCAGAAATGATGCAACACACCCACGATCCAGAGCAAGAAGCATGTCGCCACCACGAAGACGCGAAGCGTGGGCCGAAGAACGTTCTCGCTCTCCGACAGATTCCGAAGACAGGCGAGCGGGCTCAGGAACGGACGCAACATCTGATGATGGGACCGACATGGTTCTTGAGCGAGGTCGATCTCCGACTCCAGAACTTCGAGATACCCGAACTGCTCGACGGCACCACCTCGATGTTACGACTAATATCTTGAACGACAGCTTTGAGAAGTCTGTATCGCTTTCGCGGAAAACGAAACCTCCTTCACAGGGCGACAACAAGCCCGGCCGGAATGGCTTTAGCACACCTCCTAGAGAGGTGAGGGCGGCACGCTCCCCCAAGGAAGAGAAGGAAGCTCGTCCTGTCAGCCCGGCCGCCTCGAGTGTGGGTTTGGGAGCTGATGCAAGGTCCTTCACACCCATCCGCAAGGTAGAAATATCCCCGCCTGATCCCCGTCATGTCAGTCCACCGGCTAGCGTCGGGGGTAGTGAGAGGGGAAGAGATGATGACGTGTTGTCTGTGTCTGCGATGTCGAGTCGTGCGTCAACCGCATCGGAGACACTTGAACGAGCCAGGAAACGGCGAGACGAGTTTTGGAAACGAGAAAATGGGCCAAGATAGGAAGATACACCGAAAACTGAAAACGATAGAAGTACAAATGCCTAGTTTTGATACATGTCTAAGTAGAGTAACTCCTTTGTCcactaaaatttcatttaaatctGTGAAAGCAGTTTTTTACCAGTTAATTCTTAGAAAATCGTTTCTTAATGAATCGCACCCAAATAATAAGATCACATCTGTCTTGGTAAAAACACGTGAATTACTTTTTATAGCACTTCTTGTAGTCGAAAGTGCTTCCcccagtgtttttttttatacgtGGTTTCAAACGAtaggtttttttaattataagctttaagtaaaaaaaaattgtaaatgattaaaaaacaacGTGATTCTCTGTCTATCTGTTTTGCACCAGAGCGTGAAGTGTAAACATATTTTCAATGATTGTCATCCACTGTCCACTGTTTTTGTCAGTGGAGACGCGTGATGAGGATTAAAGGCCGAAAGTGGG

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009783 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15501 all species →	MDM1	Nuclear protein MDM1	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029136 all species →	Family	Nuclear protein MDM1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR32078 all species →	NUCLEAR PROTEIN MDM1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0046600 all species →	Biological Process	negative regulation of centriole replication	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17886	MDM1; nuclear protein MDM1	-	Signaling proteins	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.