Gene detail

Detailed information of PFX33464.1 in Stylophora pistillata

Genomic Location: Spis.scaffold12:1198757...1204226
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-Spis1742_mrna

ATCAAATTCTTCTGTTTATTAGTGTTTGGCATGATTATAACAATCGGTCAAGCTGTGGTGTATGTTATGACTGGAATGTATGGTGATCCTTCTGATCTTGGCCCTGGTATTTGCCTTTTGATTATCATCCAGCTGTTCTGTGCAGGTCTCATTGTTCTCTTGCTTGATGAACTTCTTCAGAAAGGATATGGGCTTGGATCAGGAATCTCGCTATTCATTGCCACAAACATTTGTGAGACCATTGTTTGGAAAGCATTCAGTCCAGCTACTATTAACACTGGCAGGGGAACTGAGTTTGAGGGTGCTATCATTGCATTGTTCCATCTGTTGGCCACCAGAACAGACAAAGTGCGTGGGCTTCGTGAAGCCTTCTATCGTCAGAACCTGCCAAATCTCACCAACCTGATTGCCACCATTTTTGTCTTTGGTATAGTCATTTACTTCCAGGGTTTCCGTGTAGATCTTCCCATCAAGTCAGCTCGCTACAGAGGCCAGTACAGTTCTTACCCAATCAAACTGTTTTACACTTCAAATATCCCCATCATTTTGCAGAGTGCCCTTGTGTCCAATATTTATGTTATTTCCCAAATGTTGTCAGCTAAGTTTGCTggaaatttctttgtcagtcTACTTGGAACATGGGAGGAAGCTGGTGGCGGACCTGCGAGATCTTACCCCATTGGTGGCCTCTGCTATTACATGTCACCTCCAGAGACAGTGAGTCACATTATAGAAGATCCCATACATGCCGTCTTGTACATTGTCTTCATGTTGGGCTCCTGTGCTTTCTTCTCCAAGACATGGATTGATGTGTCTGGCTCCTCAGCCAAAGATGTTGCTAAACAGCTGAAGGAACAGCAAATGGTGATGCGTGGTCACCGAGATAAATCCATGGTTCATGAACTCAACAGGTATATCCCTACAGCTGCAGCTTTTGGTGGACTTTGTATTGGTGCCCTTTCAGTCTTAGCTGATTTCATGGGGGCCATCGGCTCTGGAACAGGTATTCTGTTGGCTGTTACAATCATTTACCAGTATTTTGAAATCTTTGTCAAAGAGCAAAGTGAAATGGGAGGCATGGGAACTCTCCTGTTCTGAAAAAGCTGTCCTGCACTGTATCAACTATTCAGTAACTTCTACTATTGTATTACATATTCAACCCAAGAATGGAGCTGTTTTCTCTaaaattctgtttattttgttaatgATATATGAAATTTCACCTTGTATTGGCTAATTTGTGGTCTTCTTATGTAAAGTTAAATGTAAAACAACAGAAGCAGCAGTAACAAgagctacaacaacaacaacaaaccaaaGTTCCGTGATAACATTAAAATTAATACATTTATCTACattaaatgtattttcattttcaaaatgagaaaTTTCTCCTTCCTCTCATTTActgaacattttcaatttgaaaagaaaggacTTGAAGATTTCTCTCaaaaatgatcttaaaataCTTGGTTATTAACCCTTGAGAATTGAGTCCTTTCACTGTGTTTGGGATGCACCACTTCTATTCATATCAGACAAGGCAAATGTTAGTCTAAGAAAATTGCTTGGAGGATTCACTATCCTAGTTAAATACAAACATGTTATTAGTTGCAGAGATAGTTTTGCCATCCCGTAAACCAGGCTTAACTGTACAAAAAACTGGTGGCCGGCCTCCCAGATACACATGCACTAGCAAAGTTTACTTCTTCCTGTTCTTGTTGTATCAAATTTTATGGTCAACTTCCTTTTCAAAGCAGAGTTGTTAAGTGTGTTTTCTTGAATAACACTCCACTCCCTTTACTTGTATGATGAGCAGAGAAGCCTTGTTTCCAGTGTCTCTCCTTTCACCTCCTCACTCCTTGGAGCTTGAAAGGGGCAGGAATAAGGTGGGAAGTAGAAGGTACTCTTCCTCACAAATTTAACCTTGGAAAGAAGCTGGCATTCTCATATTTGACTAGATGAATTGTTGACTACGGTCGTTGCAGTAGATACTTTAATTTCAATGTCATGTGCCTTTATTGTATTTCAATACCGCATGATGGAAGgccttttttttgtgaaatttaaaaGTGATACTTGCATCTTGCCCAGCTAGACAGAtgaacaaataaagttttgtgtGAACCCAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00344 all species →	SecY	SecY	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002208 all species →	Family	SecY/SEC61-alpha family	Interproscan
IPR023201 all species →	Homologous_superfamily	SecY domain superfamily	Interproscan
IPR030659 all species →	Conserved_site	SecY conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10906 all species →	SECY/SEC61-ALPHA FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0015031 all species →	Biological Process	protein transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005048 all species →	Molecular Function	signal sequence binding	Interproscan
GO:0005784 all species →	Cellular Component	Sec61 translocon complex	Interproscan
GO:0006616 all species →	Biological Process	SRP-dependent cotranslational protein targeting to membrane, translocation	Interproscan
GO:0008320 all species →	Molecular Function	protein transmembrane transporter activity	Interproscan
GO:0031204 all species →	Biological Process	post-translational protein targeting to membrane, translocation	Interproscan
GO:0043022 all species →	Molecular Function	ribosome binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10956	SEC61A; protein transport protein SEC61 subunit alpha	-	Secretion system	ko02044	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.