Gene detail

Detailed information of PFX33553.1 in Stylophora pistillata

Genomic Location: Spis.scaffold11:389657...401489
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-Spis1567_mrna

CGGGAACGAGCAGTCGCGAagagaataaaatttcaaagcgcTTCAtagttgaaaattttctttagatTTGCGCCAATATGCAGGATTCAGAGAGGGAAGCACTTCGTAAAAACAGGCAGGCTTTGTTGAAGGATTTAGAGGCAAAAAGGATCGCTTCGCGGCTCTTTTCCAAGGCGATTTTCAGTGACGAAGACAAGGACGAAGTGAACTCTAAAGAAACAAAGAACGAGCAAGGAGAGGCTTTATTGGACATTCTTCCTCGTAAAGGACCAAAAGCTTTCAATACATTTTGCGACATATTGCACGAAGTGTCCCCTCATTTGGAGTCACTTCTAAGGCCAATTCAAGAAGAGGGTATGCCAACTGAAGGTACTGATGGTGGAATCGGCAACAAGAATCCAATTCCAAGCACTATCAATCCAGGTGCAGCAGAACATGCAGATCAAGCTGATGCTAAACTGTTTTCGTTTGGAGGCAGCTCTGGTGTCAAACCCTCCTCCAACACTTTGGACACGGAGACCGTTTACAAGATGGAGCGCGGAACACGGGGGATTGCCATTATCATTAACAATAAGGAGTTCTTGAGGAGCTCAGGAATGGATCGGTATCCTCGCAATGGAACAGATGTCGATCGAGATGCCCTACTGAAGCTTTTCAGAATGCTTAAgtttgatgttagggtttacAATAATCGTACCAGGGCTGAGATAAATAGAATTGCAAAGGATATGGCAACTTACAACCATTCCAACTACGATGCCTTCATTTTCTCGATCCTTACACACGGTGAAGAGGGTGTGATTTATGGAACAGACGGGACCCTTACCATCAAGGAGATCACATCAGAGTTCAAATATTCCGCGTCTTTAGCCGGGAAGCCAAAACTCTTTTTCTTCCAAGCATGTCAGGGTCACGAGTACATGGACGGCATGGACGTAACAGACGCCCCGCAAGATAATCGAGTCTCTGTCCCAGCTGAGGCAGACTTCCTTTACGCCTACTCCACTGTGCCCGGCTACTACTCATGGAGGAATTCTGTCAATGGATCGTGGTTCATTCAGTCGCTGACGAAGGTGTTTGAAGACAACGCGGAGCGCATGGATATTCTTCGTATGCTGACCCGTGTCAACGCCATGGTGTCCACCTACAAGTCGCGAACTGGCGACCACTACTCCGACAGCAAGCGCCAGATTTCTAGCATCGTGTCCATGCTACGCAAGGAATTGTATTTCTTCCCTGAAAATATCGAGCGCAGTTAAGGAAAAATTGGCATTTTAATGAGGTCGTGTGGTTTCTCAATTTAGATTGTATCGTGTGAATAATGTGCCTAGTATTAATGATTAAAGGGAGTCATGCCGAGACTTTTAGATGTCTAGAGAACTACGTCAAAATTTTTAAGGTCATGTTCTGTCCCGGGAAAAACTGCCTTCAGCTTGAAAGAGACCTCAAAATATAGAAAAGTACAGCGGATTTGATAGTAAACCAAGAGGAAACGAAGTTAGCAACGGATAGAGAAAAATGAAAGGGATTTGAAACGTTAAAACTGAGAAAtgtattctaatttttttcaaggcaCGTAAAGCCAGACTGGTACATTGGTTACAACACTGTGAGAAAGgttgagtttattttttattggcCAGGATGCATTATTAACCAGTAATGGTTAATCATAATTGTTTGGTGTCAGCTTATCTTTTCTcttcgatatttttctttcacatgaCTGAAATTATCTTGACGTAGGTCTTTTGGGGCCCGGCTCTCGAAGGGCTCAGCTACATTTGGGTCTCGAAGCCATACTGTGAAGCCGACACCTAATGGTAAGCATTGTGGGTCTCAGTTCAAACACGTGGCCATTCTGCTTTGTttcctgaaattttttattgtggaaacgtgaaaaatatttatatctGAATCTTTAACGTGAATGCGGGAACTAAAAAGGTCTTTACGGGACTGGTAAGGAtagggactttcgagaaacgggcccttGGATAGATATGGAAAGTGTGATGTCGGTTTGGTGTCTACTAAGTGTTGGTTGGTGGGTTCAGGAGGTTTGTTCGTCGGTAATATCGATTTTATGGTGGTCTTCAAAAGCTGCTTTCCAGGCTAAAAGGTACAGATAACTGCTTATATTCTTTCCTAGCGGGGTTAccttattttttctaaaggtttTCCCTTTTTATAGCGAATATGTAATATTGGCGCGTTTTCAACAGTACTGCACTCGAATGAGGTGATatttaaaagcgaaaaaacagATATCAAATACGTATCTGCCCCAAAACTTAAACCTTTGTTGTCAACCAGACCTGGACCCTATGACCGATCAGGAGGCTTTGGTGGGGGACGAGGAAGGTTTGGTGGAGGTGGAAATGAAAGAAGGTAATTAATGTGAGATAGTTAAGGCGTCACTTCAAACAATTCCAGTCAAAGGTTTGGTTGAATTACTTATTCGAAACTAAATTTTGTAGGTAATTTAATCATGTAAGGTAATGTGTAGAATGATTTTCTCATGAAAACTGATGTTACAATTAAAAATGGACTATTAAATGCTG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00619 all species →	CARD	Caspase recruitment domain	Domain	Interproscan
PF00656 all species →	Peptidase_C14	Caspase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015917 all species →	Domain	Peptidase C14A, caspase catalytic domain	Interproscan
IPR011029 all species →	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR029030 all species →	Homologous_superfamily	Caspase-like domain superfamily	Interproscan
IPR001315 all species →	Domain	CARD domain	Interproscan
IPR002138 all species →	Domain	Peptidase C14, caspase non-catalytic subunit p10	Interproscan
IPR011600 all species →	Domain	Peptidase C14, caspase domain	Interproscan
IPR033139 all species →	Active_site	Peptidase family C14A, cysteine active site	Interproscan
IPR001309 all species →	Domain	Peptidase C14, p20 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10454 all species →	CASPASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008234 all species →	Molecular Function	cysteine-type peptidase activity	Interproscan
GO:0042981 all species →	Biological Process	regulation of apoptotic process	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006915 all species →	Biological Process	apoptotic process	Interproscan
GO:0043525 all species →	Biological Process	positive regulation of neuron apoptotic process	Interproscan
GO:0097153 all species →	Molecular Function	obsolete cysteine-type endopeptidase activity involved in apoptotic process	Interproscan
GO:0004197 all species →	Molecular Function	cysteine-type endopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02187	CASP3; caspase 3	EC:3.4.22.56	Peptidases and inhibitors	ko01002	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.