Gene detail

Detailed information of PFX33712.1 in Stylophora pistillata

Genomic Location: Spis.scaffold9:654745...663703
NR annotation: no NCBI-NR hit recorded
Species abbreviation SPIST · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Helb

ATGACTTCCTTTTACGTTATTGCTGAGGAAAAAGACAGCGACAAGAAGCAAGGAGATTCTGATTTCGAGAGTGAAAGTGACGATGAAGGCTTCGAAGACGCTGATCAAGATTTTGACTTCGTTCATAAGCCATCGCACAAACTTCGCAATGGTGTGAAGAAAATGCAAGAAATGGAAGTCGAAAACGGTCGATTTCGCCTTGGACGGGGCACAACCTATGTACGTGGTAGATTTGATGAGCGTTTTTCTTATCCTTGGTGGAGAGTGGAATTCGAATTGCACGCGTCGAAATCTTCGAAGAACGTCAAGCACGCTACTTCACTACCTTCGTACAGCATCCGAACGGACGATAATGTGGATAAAAGCTTGCTTTCGCAGTTCCTGACCAGGGGACTGAAAGTGAATGACCAACACGTCACAATGTTGTTAGAGTTTATTGAAATGCAAAATATTAAACCTACACTAGAGGATTTGGTTAAAAACCTGGAAAAATTTTCTGCAACTGGCAAAGTCGGCCACGATGTTGCTGTGCAGATTAGTACGGCGCTACAACATACGCCAACTGGTAAAGCCTTTGCTGTGCCTTATTTTACTGGGTATGCTCATCGGCTTTTTCCTCGTCGTGTTTGTTCCATCTTTGAGGAATATTCTCTGGAAATGCTGGAAAAGCTCAATGAGGCACTGGATAAAGAACCCTGGGTTTTTGGTTACTGGAGGGTTCTCAAAGAGAGATTTGAGCTCTCAAGCTGTGAAGTAAAGCTAAAATCATTCCAAGACTGCAATTTACTTAACCAAATGCCAATTGCCAAGCAAGATGCATTGTGCATATATAATGCCCTATCAGGATTGATTCTCAAGGATGGCCATACTTTTGTAGAATTCAAGATGCTGAAGAAGATGGAGAAGTTAAAGGGAATCACTAACTGGAAAGAAAGTCTTGACTATTTAAAAGAAATCGATGTTGTAGGGACTTCAGAAAACCATCTGGGTGACAATCAGCATGTTTTTTTGACACACATTCGTCATTACGAAGAAGGAATTGCAAAACAAGTGGCTGCAATCATGGATAAAAAACCTTGGTTGGATAATGTGAAGATTGATGAGAAAATATTTGATGGTGATGTAGACCAGATCCATGCAGCCCAACTCATATCAACAAAACCAGTTGCTGTACTCTCAGGCAGGGGTGGTTGTGGTAAGACGTTTGTTGTGTCAGAAATCTTGAAGAAGGTACTAGAGGAAAAGAAGGAAAAGATCCTCCAAGAGAACCCTGTAAATTCAGTTGAAACAAACATAGACATTTGTGAAGACTACAGTGAGAAACTCAAAGAAGTTAATGAACAAGTTTTGTTGACTGCTCCAACTGGCAAGGCTGCCTCCATCTTAGGGAAAAGAATCGGAATTCCTGCACATACACTGCACTCAGTCATCTTCACATTTCTACACTGGAAAAATAAGGGTGGAGATCACAATGAGTGGAAATTCAGCAAGGTTTGCCTTCTAGTGTGTGATGAATGTAGGCTGGTGTCTGTGAGGGTGTTCTACAAGCTGATCATCATTTTGCATTGGCATGCACAACTTCAACATGTGATGCTCTTGGGGGATGTAAATCAACTTCCATCCATTGAGCCTGGGAATTTTCTGAGCGATCTTTTCCATGTGTTGGAGAAAGATGCCCTCTGCATCACTCTGCCAACTAACCACAGATCAGATTCGGAACTTATTGTTCAAAATGCTGGAAAAATATCTTTGCAGCAGATGCCACCTTTTGATCCACAAAGAGGTTTCTTCTCAGTAAAATACAATGCAAATGCTGACTCTGATGGTAACAAGATCACTCAAGTTGTTAAAGGTGTTCTAAAAAATGAGGGAAACCCTTTTGTCCTGCCTAAACCTGACGAATCTCAATTTGTGGCATTTCGGCGTAATGACTGTGACAATATTAATGAAATATGTGCCCAGCATTTCAGCAAACACCCCATCAAAGACCACCGTGGGAAACTGAAATTTGAAGTTGGAGACAAAGTCTGTGTGAGGCGTAACGTGGTATGTCTTGATGAATACGATAAGAAAACAGTCAAAATTTGCAATGGAGAGATATTCTTCATTCAGGAAGTCATTCAGGAACAAGATGAAAGGAACAAAAAGAAAATGTTCTTCTGTCTAGACAATGGCGAAAAGAAAATAAAGATTGATTTCAGGACACTGAAATCAGCCAAACTGAGTCATGCCTGGGCAAGAACCATTCACACATTCCAGGGCTCAGAGTGTGACACGATTGTCTATGTGGTGGGAAATCCGTGTTACCAGAACTGGCAGCATGTGTACACAGCAGTCACCCGTGGCGTGCGGCAAGTTATAATGATATACAAACATAGCTCCTTGTTGCGTGCCGTGACGTCACACCCTGTACCACGTAAGACTAAATTAAAGGAAGACATAAAGAAAGCTTTGAGATGCCGATTTAGGCCTAATATGCATGATGGAATGAGTACCAACGCCCAAATTGGCCTAGATTCTGGAGTTGGTGTCGAGAATACGTTTCCTCTTCTGCCCGCTGATGACATGAAAGAAGCCGCTGTAAATTCAGTACTAGAGGCTCATGGCGAAGACCAAAAGCGGGTATCAGAGAAGTCTTTTCCACAAGCAACACCCTCGACCAGCGATCTAAGATGTTCAACTGATTTTTTTATCTCAAAAAAAAATCTGAATATCAGGAAGCATTGGAAGGAGCAAGGAGACACGAGCTACGCTCCTGCTTCACAGAGAAGTAGGTCTTCTCGTGAATTGGCTGCAGACCACCGTCAGGAAATGGCTGTAAATGCTTCAGATGCCAGAGACCCGCAAAAGATATCTGTTGGTTCCCCTCAGCGGTGGAATAGTGGCTTTGAAGTCGTTGTTGAAAGTCCAAGCCACAAAAGGAAACATCCAGAAAACACCAAACAGGACGGACAGGAAATCTTGGACGCAAAGATTTTTCAGAGCCCGATACTGAAAAGAAAGTACCCTGAGGGTACCACTCTTTTATCTCCTCCGCAGACTCCACCGTGCCTTAGGAAATTCTCATCGTCCCTTTCATCTGTTAGCCCCTTGAGTCAGACTTCAACAGAAATCCAGCAAGCTGCTGATAAGAACACAGCTACAACAGGAACTACTGCAAAATACAACGGCCATTGCAAGGTCTGCAAACGTCCAGTTCGTGCAGGCAAAGACCAAATTATTTATCATTTTAAGGGCTCCAGCAAATCTTGGATTCATGTTAAGTGCTCAACCAGTGATACGCAAAAGGGACCAGTATAA

Transcript

rna-Spis1358_mrna

ATGACTTCCTTTTACGTTATTGCTGAGGAAAAAGACAGCGACAAGAAGCAAGGAGATTCTGATTTCGAGAGTGAAAGTGACGATGAAGGCTTCGAAGACGCTGATCAAGATTTTGACTTCGTTCATAAGCCATCGCACAAACTTCGCAATGGTgtgaagaaaatgcaagaaatgGAAGTCGAAAACGGTCGATTTCGCCTTGGACGGGGCACAACCTATGTACGTGGTAGATTTGATGAGCGTTTTTCTTATCCTTGGTGGAGAGTGGAATTCGAATTGCACGCGTCGAAATCTTCGAAGAACGTCAAGCACGCTACTTCACTACCTTCGTACAGCATCCGAACGGACGATAATGTGGATAAAAGCTTGCTTTCGCAGTTCCTGACCAGGGGACTGAAAGTGAATGACCAACACGTCACAATGTTGTTAGAGTTTAttgaaatgcaaaatattaaacCTACACTAGAGGATTTGGTTAAAAACCTGGAAAAATTTTCTGCAACTGGCAAAGTCGGCCACGATGTTGCTGTGCAGATTAGTACGGCGCTACAACATACGCCAACTGGTAAAGCCTTTGCTGTGCCTTATTTTACTGGGTATGCTCATCGGCTTTTTCCTCGTCGTGTTTGTTCCATCTTTGAGGAATATTCTCTGGAAATGCTGGAAAAGCTCAATGAGGCACTGGATAAAGAACCCTGGGTTTTTGGTTACTGGAGGGTTCTCAAAGAGAGATTTGAGCTCTCAAGCTGTGAAGTAAAGCTAAAATCATTCCAAGACTGCAATTTACTTAACCAAATGCCAATTGCCAAGCAAGATGCATTGTGCATATATAATGCCCTATCAGGATTGATTCTCAAGGATGGCCATACTTTTGTAGAATTCAAGATGCTGAAGAAGATGGAGAAGTTAAAGGGAATCACTAACTGGAAAGAAAGTCTTGACTATTTAAAAGAAATCGATGTTGTAGGGACTTCAGAAAACCATCTGGGTGACAATCAGCATGTTTTTTTGACACACATTCGTCATTACGAAGAAGGAATTGCAAAACAAGTGGCTGCAATCATGGATAAAAAACCTTGGTTGGATAATGTGAAGATTGATGAGAAAATATTTGATGGTGATGTAGACCAGATCCATGCAGCCCAACTCATATCAACAAAACCAGTTGCTGTACTCTCAGGCAGGGGTGGTTGTGGTAAGACGTTTGTTGTGTCAGAAATCTTGAAGAAGGTACTagaggaaaagaaggaaaagatcCTCCAAGAGAACCCTGTAAATTCAGTTGAAACAAACATAGACATTTGTGAAGACTACAGTGAGaaactcaaagaaGTTAATGAACAAGTTTTGTTGACTGCTCCAACTGGCAAGGCTGCCTCCATCTTAGGGAAAAGAATCGGAATTCCTGCACATACACTGCACTCAGTCATCTTCACATTTCTACACTGGAAAAATAAGGGTGGAGATCACAATGAGTGGAAATTCAGCAAGGTTTGCCTTCTAGTGTGTGATGAATGTAGGCTGGTGTCTGTGAGGGTGTTCTACAAGCTGATCATCATTTTGCATTGGCATGCACAACTTCAACATGTGATGCTCTTGGGGGATGTAAATCAACTTCCATCCATTGAGCCTGGGAATTTTCTGAGCGATCTTTTCCATGTGTTGGAGAAAGATGCCCTCTGCATCACTCTGCCAACTAACCACAGATCAGATTCGGAACTTATTGttcaaaatgctggaaaaatATCTTTGCAGCAGATGCCACCTTTTGATCCACAAAGAGGTTTCTTCTCAGTAAAATACAATGCAAATGCTGACTCTGATGGTAACAAGATCACTCAAGTTGTTAAAGGTGTTCTAAAAAATGAGGGAAACCCTTTTGTCCTGCCTAAACCTGACGAATCTCAATTTGTGGCATTTCGGCGTAATGACTGTGACAATATTAATGAAATATGTGCCCAGCATTTCAGCAAACACCCCATCAAAGACCACCGTGGGAAACTGAAATTTGAAGTTGGAGACAAAGTCTGTGTGAGGCGTAACGTGGTATGTCTTGATGAATACGATAagaaaacagtcaaaatttGCAATGGAGAGATATTCTTCATTCAGGAAGTCATTCAGGAACAAGatgaaaggaacaaaaagaaaatgttcttcTGTCTAGACAATGgcgaaaagaaaataaagattgattTCAGGACACTGAAATCAGCCAAACTGAGTCATGCCTGGGCAAGAACCATTCACACATTCCAGGGCTCAGAGTGTGACACGATTGTCTATGTGGTGGGAAATCCGTGTTACCAGAACTGGCAGCATGTGTACACAGCAGTCACCCGTGGCGTGCGGCAAGTTATAATGATATACAAACATAGCTCCTTGTTGCGTGCCGTGACGTCACACCCTGTACCACGTAAGACTAAATTAAAGGAAGACATAAAGAAAGCTTTGAGATGCCGATTTAGGCCTAATATGCATGATGGAATGAGTACCAACGCCCAAATTGGCCTAGATTCTGGAGTTGGTGTCGAGAATACGTTTCCTCTTCTGCCCGCTGATGACATGAAAGAAGCCGCTGTAAATTCAGTACTAGAGGCTCATGGCGAAGACCAAAAGCGGGTATCAGAGAAGTCTTTTCCACAAGCAACACCCTCGACCAGCGATCTAAGATGttcaactgatttttttatctcaaaaaaaaatctgaatatCAGGAAGCATTGGAAGGAGCAAGGAGACACGAGCTACGCTCCTGCTTCACAGAGAAGTAGGTCTTCTCGTGAATTGGCTGCAGACCACCGTCAGGAAATGGCTGTAAATGCTTCAGATGCCAGAGACCCGCAAAAGATATCTGTTGGTTCCCCTCAGCGGTGGAATAGTGGCTTTGAAGTCGTTGTTGAAAGTCCAAGCCACAAAAGGAAACATCCAGAAAACACCAAACAGGACGGACAGGAAATCTTGGACGCAAAGATTTTTCAGAGCCCGATACTGAAAAGAAAGTACCCTGAGGGTACCACTCTTTTATCTCCTCCGCAGACTCCACCGTGCCTTAGGAAATTCTCATCGTCCCTTTCATCTGTTAGCCCCTTGAGTCAGACTTCAACAGAAATCCAGCAAGCTGCTGATAAGAACACAGCTACAACAGGAACTACTGCAAAATACAACGGCCATTGCAAGGTCTGCAAACGTCCAGTTCGTGCAGGCAAAGACcaaattatttatcattttaaggGCTCCAGCAAATCTTGGATTCATGTTAAGTGCTCAACCAGTGATACGCAAAAGGGACCAGTATAAGCGTCAAAAAGATGATGATATCGGGGTTTAAATGGTTGATGAAATCTCTCCCGTCGGCAGTTAAAGTAGTTCTTAGAGTTTGTAACAGTTACCGACGTTCATTTGTATTACAAATGAGATTTCGTTGCTGGGACGTATCAAAATGTTTAGGAAATATTGTTTGGTGGGTTCTACTGTTGGaatattattcttttttccttgaaaatttgaacGGGAAATTTGTCTCTCAGAATATATCCTGATTGGTCGCCCAATAAGCGCAaaattttacttgttttaaCTTTTCTATATGCTTTTGTGATTTATTTTATAGACTTCTTATTACAGTTCTTTCACCcatgatttatttttaagtctTCCTCTATAGTGGAGCATGCTCAGCGAAGCCTcatactgttaaaaaaaaaaaaatagtggtaGTAATAACCTATTAAGCCTGGAAAATTTGGTTCAATAATACATGGAGAAGACACTTtttgtagtttaatttttttaggaaGATCTTACCCATTCGCGCGTTTTGCGATCTATGTTCCCATCAATA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13538 all species →	UvrD_C_2	UvrD-like helicase C-terminal domain	Domain	Interproscan
PF13604 all species →	AAA_30	AAA domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050534 all species →	Family	Coronaviruses polyprotein 1ab	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR027785 all species →	Domain	UvrD-like helicase C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43788 all species →	DNA2/NAM7 HELICASE FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0017116 all species →	Molecular Function	single-stranded DNA helicase activity	Interproscan
GO:0043139 all species →	Molecular Function	5'-3' DNA helicase activity	Interproscan
GO:2000042 all species →	Biological Process	negative regulation of double-strand break repair via homologous recombination	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15254	HELB; DNA helicase B	EC:5.6.2.3	DNA replication proteins	ko03032	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.