Gene detail

Detailed information of PFX33753.1 in Stylophora pistillata

Genomic Location: Spis.scaffold9:1684733...1698387
NR annotation: no NCBI-NR hit recorded
Species abbreviation SPIST · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-Spis1447_mrna

cgaaaacaaaatggcggaactAAAGTACATGTCAGGTTTTGGTAATGAGTTTGCCTCTGAAGCCGTGCTGGATGCGCTTCCGAAAGGACAGAATGCTCCTCAAAAATGCCCATATGGTTTATATGCTGAGCAACTCTCTGGGACAGCTTTCACTGCCACAAGAGAATATAACTGCAGAAGCTGGTTATACCGCATCAGACCATCAGCTGTGCACAAGCCTTTTGAGAAGATAGCTCAGGGAGATCTGACACATTCCTGGGATGATTGTGACCCTAATCCTAATCAGTTGCGATGGAAACCATTTGATATCCCTCCTGAAGGAAGCAATATTGACTTCACGCAAgGTTTGCACACAATATGTGGAGCAGGGGATCCTCACACAAGGCATGGTGTTGCAATCCATGTCTATGGCTGTGATATCTCTATGAAAGACAAGTGTTTCTATAATGCTGATGGGGATTTCCTTATAGTTCCACAAAAGGGGACCTTGATGATAACAACAGAATTTGGCAAAATGGAAGTGAAACCAAATGAAATTTGTATAATCCAGCAAGGAATTAGATATTCAGTGGAGATCAGTGAACCCTCGAGGGGATATATTCTGGAGGTGTTTGATGCCCACTTTGTGTTGCCAAATTTGGGACCAATAGGTGCAAATGGACTGGCTAACCCCCGGGACTTCTTGACACCAGTAGCATGGTATGAGGACAGAGATGTGGAATCTGGTTTCTCTGTGATCAGCAAGTACCAAGGAAAGCTATTCAAAGCTATACAGGGTCATTCTGCATTTGATGTTGTAGCTTGGCATGGCAATTATGCTCCATACAAATATGATCTCAACTGTTTTAACGTCGTGAACACTGTCTCTTTCGACCACATTGATCCTTCTGTCTTCACTGTTCTGACTTGTCCCAGTCTAAGACCAGGAACTGCAATTGCAGACTTTGTTATATTTCCACCAAGGTGGAGTGTGGCTGAAAACACATTTAGACCTCCTTATTATCACCGCAACTGCATGAGTGAGTTTATGGGCTTGATTTTTGGTAAATATGAAGCGAAGGAAGAAGGATTTGCTCCAGGGGGTGCTAGTCTGCATAGTATGATGACCCCCCACGGACCTGATAGAGATTGTTTTGAGAAGGCGACAGAAGCAGACTTGAAACCTCAACGAGTCGCAGATGGTACTATGGCGTTCATGTTTGAAAGTAGCATGAGCATGGCGCTCACTAATTGGGGAAATGAGACTTGCCAGAAGGTGGATCATGATTATTACAAAGTGTGGCAGCCATTACAGAAACACTTCGACCCCAACAGGAAAACACCTTGATGGACAACAAACTATCTTAATGGTCGTAATATTGCATCGGGTTCTGACTGACTAATTTATGCGCATTCGTTTAGACATAACATAGTCACATTGGAAGCCAAATGACGATAGGAAAACATTATGAAGGATCACAGGTTCTCTGAGTGTCGCATCGGTTCTTGCCCGACTTATCTTTAAATACACTTAGACTCAATATAATCGCAGTATTTAACTTTTACACAAGAATAAGGGAACGTAGactgacaaaggaaaaatcGGAGTGAAGAGAATCAAACAAATGGCAATGCAAGTGGAACTGGTATCTTTGACGTCATGAAGTGAGATGTTGTTTAGATAAATTACTATTATGATCATTGTGCCCGCAAAGAGGGCAAGTTTGCATACAAATGTACGACCgactttttaatattttaaaccaTACAATCTCTTTGACGGCGCTAGAGTAATAAGCGTGTTACACATATGTAGTAGAATGTCCTTATAGTGAAGAATTTCTGCATCTCAGGTTGTAAATTTGATCTGATCCGTGAAACTAGAATGAGATATGGGTGGAAGTGCTTTGTAGTTTTCCTTAGGTCGTGATAGTCACTTGGTCACTTTCGTGCGGAAGTGCCCTCttctcttcccctcccccccttccccatACCCTTGAACGTTGACTTCACTGTAGAATTCCAACTTGATGTTCCAACTAAACGAGAAACACTTTGGAAAATGGATTGGACAGCTGTAGCCAAAAAGACAGGTTTAATGGTTGAGGTAGTTTAATGTGCCGTTTGCTGGTGTGATTTTAAGAGCATTATAAGACTATTTATCAAAGTTGATGTGTATTGATACGAcgaataaag

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04209 all species →	HgmA_C	Homogentisate 1,2-dioxygenase C-terminal	Domain	Interproscan
PF20510 all species →	HgmA_N	Homogentisate 1,2-dioxygenase N-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005708 all species →	Family	Homogentisate 1,2-dioxygenase	Interproscan
IPR011051 all species →	Homologous_superfamily	RmlC-like cupin domain superfamily	Interproscan
IPR014710 all species →	Homologous_superfamily	RmlC-like jelly roll fold	Interproscan
IPR046451 all species →	Domain	Homogentisate 1,2-dioxygenase, C-terminal domain	Interproscan
IPR046452 all species →	Domain	Homogentisate 1,2-dioxygenase, N-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11056 all species →	HOMOGENTISATE 1,2-DIOXYGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004411 all species →	Molecular Function	homogentisate 1,2-dioxygenase activity	Interproscan
GO:0006559 all species →	Biological Process	L-phenylalanine catabolic process	Interproscan
GO:0006570 all species →	Biological Process	tyrosine metabolic process	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00451	HGD, hmgA; homogentisate 1,2-dioxygenase	EC:1.13.11.5	Styrene degradation	ko00643	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.