Gene detail

Detailed information of PFX33876.1 in Stylophora pistillata

Genomic Location: Spis.scaffold8:1468268...1490075
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Hacl1

ATGGTGGGTCAAGAATTCCAAGAAGTAACTAACCACGAGGAGTCCCTCTCTGGTGCATCGCTGCTAGCCTCTGCCCTGAAGAATCAAGGTGTGGAATACATGTTTGGAGTTGTAGGAATACCAGTCATAGAGATCGCAGGGGCTGCACAAGCAGAGGGAATCAAATACATTGGCATGAGAAACGAACAAGCAGCGTGTTATGCGGCATCAGCAGTTGGATATTTGACTGGACGACCTGGTGTCTGTCTCGTAGTTTCTGGTCCCGGATTATTACATGCTCTTGGAGGAATGGCAAACGCAATGAGTAACTGTTGGCCTGTTTTAGTGATTGGTGGGTCAAGTGATGTTGATCAAGAAAGCATGGGTGCTTTTCAAGAGTTTCCACAGTGCAGTGCAGACACTGGGCCAAGCTCTGGAATAAACCATTGCCTGGGCGCTACACTTGTGGGACCAAGTGCAGACATGTTGCCATGCGAGAGTGCTCAAATCACAACTAAGGTTGAAGCAGCAAGACCTTATAGCAAGTATTCAGCAAGACCAAGCAGTGTTGGGGAGATACCATTCTTTGTTGAGAAGGCAGTGAGGACAAGTATCTATGGAAGACCTGGTGCATGTTATCTGGACTTACCAGGGAATATGATTACAGAGAAGGTTGCAGCCTGCAAGGCAAGGAAAATTTGCTGTTCACCTCCTCCACCCAAGTGTCTAGCAGATCCAGTTGCTGTTGACAAAGCTGTCCAGGTTCTTAGTGAAGCAAGTAAACCTCTGGCGATAATTGGAAAAGGTGCTGCATATGCACACGCTGAGAAACCTCTTCAGGAATTTGTAGAGAGATGCAAGCTGCCATTTCTCCCCACCCCCATGGGGAAGGGAGTGATTTCTGATGAGCATCCCCTCTGTGTGGCTGCAGCCAGATCAAGAGCCTTATCTCAAGCTGATGTTATCATTGTGTTTGGTGCAAGATTGAACTGGATTCTTCATTTTGGAAGACCACCAAGATTTAGGGCCGATGTTAAAATAATACAGATTGATCTCCATGCAGAGGAAATGAATAATAATGTACATGCAGAGGTTATGCTTTGGGGAGATTTAAAGAGAGTGGCAGAACAGCTAAGGGATGCAGTTGAGAGAAAGTTTGGAATAGATCCAGCAAATCTCTGTGGTTTACCCAGCTGGAAAAAAGAACTCAAAGAAAAGTCTGATACAAACAAACAAAACAATGAGGAACTTGCCAATGAGACATCTGTTCCAATGAACTACTACCAAGTTTACGGTCAGCTCACAAAGCATTTACCACATGACTGTGTTGTAGTTAATGAAGGAGCAAACACTATGGACATTGGGCGAACCATGATACCCAATCACCTCCCTCGAAACAGGCTCTTCACTAAAGTGATGTTCAGTGACCACGTCAACAAGTCAACAATAACTGTCGATGGCAAGACCATTGAGGAAGCAGACAGCTATGTCTACTTTGAAAAGACATTGACACGAGATGGTGACCTACTTCCTGAGATTAGGAGAAGGACTGCACTTGGTTGGGCAGCCTTTAGAAAAGTGGGCAACATCATGAGAAGCCACAAGGCAAGTATGAAGATGAAGAGGAAGATACACGACGAGTACATTCTACCAGTAATGACTTACGGGCTAGACGCGGGCACGTTTGGTACAATGGGGGTGGGGACCGGTTTTGCCATAGCTGCTGCCCTGTTAGCTGAGTGCCAAGCTAAAGACAAAAACCGCCCAAGGAGGGTGGTGTGCGTCCAAGGCGACAGTGCTTTTGGTTTCTCAGGAATGGAGCTTGAAACTGCGTGCAGTGCACCTCCGACAGCTCTTTTACCCAAGGCTAGGTACGAGAGAATTATCGAAGCATTCGGAGGAAAAGGTTTCTTTGCAGAGACACCGCATGAACTGAAAACTGCGTTGGAGAGCGCTTTCGTCGAGACGGGAAAGAAAAGGAAACCAGTTTTGATAAATGTCATGATAAGCCCTTATGCCGACCGTAAACCGCAGCTAATGCTTGTTATCGGACATGCTTTAATCACTACCTTGAAAGTCGATCTTAGAAAATCTGGAAAAGACGTCTACCACAAAGAATTTACCACACAAAGAGACATGTCAGCCGGAGAATCTTGGAGTCGTGAAGTTCACGGAAAATTCAACGAACTCTTGACCTCGTTTGAAAAACGTGAGAGCGAGCTGACAAGATTGAGCGAGCAACTCGAAAGAGATCGGGCTGAATTTGAACAAGAAATGAAGACCAGGCGAGAAAAAGAGGAAATGGAAATTCAAGAACAATACAAAGATATTGACGAGACCAGGCGACGGATCGAAAAAGAAAAGAAAAGAATGGAAGAGGTGCATGAATTTCAGTCGTCACCTGTTCATCTTAATATAGGAGGGCATCGTTTCACAACTTCCCTTCAGACACTGAGGCGAGATAAAGACTCGATGCTGGCTACCATGTTTTCTGGGAGGCACAAACTTCTACAAGAACCAGACGGGAGTTATTTCGTGGACAGAGATGGCACTCATTTCCGGCACATTTTGAATTATCTCCGCGATGGCGTTAGACCTGATATGCTTCCCCAAGATGAAGTATCCCTGAGGGAGATCATAAACGAGGCGCAGTATTATCAACTCAATGATCTAGTGGCTGGCGTTGAGAATGTGTTGGATCCGCCGCCGCCGGCACCAGACTTCACCCAGGACGAAATCAATAACCTATTAGCGACCTTGACGAGACAAGCTTGCTCCAGCACCCGTCCTTCATCATCAAGTCAGCAGGTGCCTAGACCAGATTCAGGATTAAGCTCCTCTAGATTTAAAAATGCAGACTTTGTCTTCCACAACATGACCAAAAGTACTCTAGATTTCAGTGGTAAAAACCTGTCAGGTCTTTCCTTTGCTCATACCACCTTTGCGCATAATGTTTCATTTGCAGAAGCTTGTCTGGTAAACACATGCTTCTATGGCTGTGAGTTTTCTAGTTATGTGGTGGTTGATTTCACAAATGCTGACATCTCAGGTGCAGATTTCCGACAATGTCGCTGTATACAAAGTGGCCCTAATGCATTCAGTAGTCTTGGGGGTGTCCCAGCAGGTACTGGTGGTTTTATGTTTGGCTCCAGCTGTTCCAGTTTTACACAGCTAATAAAGACAGGTCATGTCAAGTTTACTGGTGCACGGCACATTGGTACCAAATTTGAGCCACATATTATTGATTTCATTAGTTTTTGA

Transcript

rna-Spis1298_mrna

ATGGTGGGTCAAGAATTCCAAGAAGTAACTAACCACGAGGAGTCCCTCTCTGGTGCATCGCTGCTAGCCTCTGCCCTGAAGAATCAAGGTGTGGAATACATGTTTGGAGTTGTAGGAATACCAGTCATAGAGATCGCAGGGGCTGCACAAGCAGAGGGAATCAAATACATTGGCATGAGAAACGAACAAGCAGCGTGTTATGCGGCATCAGCAGTTGGATATTTGACTGGACGACCTGGTGTCTGTCTCGTAGTTTCTGGTCCCGGATTATTACATGCTCTTGGAGGAATGGCAAACGCAATGAGTAACTGTTGGCCTGTTTTAGTGATTGGTGGGTCAAGTGATGTTGATCAAGAAAGCATGGGTGCTTTTCAAGAGTTTCCACAGtgcagtgcagacactgggccaagctctggaataaaccattgcctgggcgctacacttgtgggaccaagtgcagacatgttgccatgcgagagtgctcaaatcacaactaagGTTGAAGCAGCAAGACCTTATAGCAAGTATTCAGCAAGACCAAGCAGTGTTGGGGAGATACCATTCTTTGTTGAGAAGGCAGTGAGGACAAGTATCTATGGAAGACCTGGTGCATGTTATCTGGACTTACCAGGGAATATGATTACAGAGAAGGTTGCAGCCTGCAAGGCAAGGAAAATTTGCTGTTCACCTCCTCCACCCAAGTGTCTAGCAGATCCAGTTGCTGTTGACAAAGCTGTCCAGGTTCTTAGTGAAGCAAGTAAACCTCTGGCGATAATTGGAAAAGGTGCTGCATATGCACACGCTGAGAAACCTCTTCAGGAATTTGTAGAGAGATGCAAGCTGCCATTTCTCCCCACCCCCATGGGGAAGGGAGTGATTTCTGATGAGCATCCCCTCTGTGTGGCTGCAGCCAGATCAAGAGCCTTATCTCAAGCTGATGTTATCATTGTGTTTGGTGCAAGATTGAACTGGATTCTTCATTTTGGAAGACCACCAAGATTTAGGGCCGATGTTAAAATAATACAGATTGATCTCCATGCAGAGGAAATGAATAATAATGTACATGCAGAGGTTATGCTTTGGGGAGATTTAAAGAGAGTGGCAGAACAGCTAAGGGATGCAGTTGAGAGAAAGTTTGGAATAGATCCAGCAAATCTCTGTGGTTTACCCAGCtggaaaaaagaactcaaagaaaagtctgatacaaacaaacaaaacaatgagGAACTTGCCAATGAGACATCTGTTCCAATGAACTACTACCAAGTTTACGGTCAGcTCACAAAGCATTTACCACATGACTGTGTTGTAGTTAATGAAGGAGCAAACACTATGGACATTGGGCGAACCATGATACCCAATCACCTCCCTCGAAACAGGCTCTTCACTAAAGTGATGTTCAGTGACCACGTCAACAAGTCAACAATAACTGTCGATGGCAAGACCATTGAGGAAGCAGACAGCTATGTCTACTTTGAAAAGACATTGACACGAGATGGTGACCTACTTCCTGAGATTAGGAGAAGGACTGCACTTGGTTGGGCAGCCTTTAGAAAAGTGGGCAACATCATGAGAAGCCACAAGGCAAGTATGAAGATGAAGAGGAAGATACACGACGAGTACATTCTACCAGTAATGACTTACGGGCTAGACGCGGGCACGTTTGGTACAATGGGGGTGGGGACCGGTTTTGCCATAGCTGCTGCCCTGTTAGCTGAGTGCCAAGCTAAAGACAAAAACCGCCCAAGGAGGGTGGTGTGCGTCCAAGGCGACAGTGCTTTTGGTTTCTCAGGAATGGAGCTTGAAACTGCGTGCAGTGCACCTCCGACAGCTCTTTTACCCAAGGCTAGGTACGAGAGAATTATCGAAGCATTCGGAggaaaaggtttctttgcagAGACACCGCATGAACTGAAAACTGCGTTGGAGAGCGCTTTCGTCGAGacgggaaagaaaaggaaaccaGTTTTGATAAATGTCATGATAAGCCCTTATGCCGACCGTAAACCGCAGCTAATGCTTGTTATCGGACATGCTTTAATCACTACCTTGAAAGTCGATCTTAGAAAATCTGGAAAAGACGTCTACCACAAAGAATTTACCACACAAAGAGACATGTCAGCCGGAGAATCTTGGAGTCGTGAAGTTCACGGAAAATTCAACGAACTCTTGACCTCGTTTGAAAAACGTGAGAGCGAGCTGACAAGATTGAGCGAGCAACTCGAAAGAGATCGGGCTGAATTTGAACAAGAAATGAAGACCAGGCGAGAAAAAGAGGAAATGGAAATTCAAGAACAATACAAAGATATTGACGAGACCAGGCGACggatcgaaaaagaaaagaaaagaatggaaGAGGTGCATGAATTTCAGTCGTCACCTGTTCATCTTAATATAGGAGGGCATCGTTTCACAACTTCCCTTCAGACACTGAGGCGAGATAAAGACTCGATGCTGGCTACCATGTTTTCTGGGAGGCACAAACTTCTACAAGAACCAGACGGGAGTTATTTCGTGGACAGAGATGGCACTCATTTCCGGCACATTTTGAATTATCTCCGCGATGGCGTTAGACCTGATATGCTTCCCCAAGATGAAGTATCCCTGAGGGAGATCATAAACGAGGCGCAGTATTATCAACTCAATGATCTAGTGGCTGGCGTTGAGAATGTGTTGGATCCGCCGCCGCCGGCACCAGACTTCACCCAGGACGAAATCAATAACCTATTAGCGACCTTGACGAGACAAGCTTGCTCCAGCACCCGTCCTTCATCATCAAGTCAGCAGGTGCCTAGACCAGATTCAGGATTAAGCTCCTCTAGATTTAAAAATGCAGACTTTGTCTTCCACAACATGACCAAAAGTACTCTAGATTTCAGTGGTAAAAACCTGTCAGGTCTTTCCTTTGCTCATACCACCTTTGCGCATAATGTTTCATTTGCAGAAGCTTGTCTGGTAAACACATGCTTCTATGGCTGTGAGTTTTCTAGTTATGTGGTGGTTGATTTCACAAATGCTGACATCTCAGGTGCAGATTTCCGACAATGTCGCTGTATACAAAGTGGCCCTAATGCATTCAGTAGTCTTGGGGGTGTCCCAGCAGGTACTGGTGGTTTTATGTTTGGCTCCAGCTGTTCCAGTTTTACACAGCTAATAAAGACAGGTCATGTCAAGTTTACTGGTGCACGGCACATTGGTACCAAATTTGAGCCACATATTATTGATTTCATTAGTTTTTGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00205 all species →	TPP_enzyme_M	Thiamine pyrophosphate enzyme, central domain	Domain	Interproscan
PF02775 all species →	TPP_enzyme_C	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain	Domain	Interproscan
PF02214 all species →	BTB_2	BTB/POZ domain	Domain	Interproscan
PF02776 all species →	TPP_enzyme_N	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012000 all species →	Domain	Thiamine pyrophosphate enzyme, central domain	Interproscan
IPR011766 all species →	Domain	Thiamine pyrophosphate enzyme, TPP-binding	Interproscan
IPR003131 all species →	Domain	Potassium channel tetramerisation-type BTB domain	Interproscan
IPR011333 all species →	Homologous_superfamily	SKP1/BTB/POZ domain superfamily	Interproscan
IPR029035 all species →	Homologous_superfamily	DHS-like NAD/FAD-binding domain superfamily	Interproscan
IPR012001 all species →	Domain	Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain	Interproscan
IPR029061 all species →	Homologous_superfamily	Thiamin diphosphate-binding fold	Interproscan
IPR045025 all species →	Family	TPP-binding domain containing protein HACL1-like	Interproscan
IPR000210 all species →	Domain	BTB/POZ domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43710 all species →	2-HYDROXYACYL-COA LYASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000287 all species →	Molecular Function	magnesium ion binding	Interproscan
GO:0030976 all species →	Molecular Function	thiamine pyrophosphate binding	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0051260 all species →	Biological Process	protein homooligomerization	Interproscan
GO:0001561 all species →	Biological Process	fatty acid alpha-oxidation	Interproscan
GO:0005777 all species →	Cellular Component	peroxisome	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for PFX33876.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.