Gene detail

Detailed information of PFX33912.1 in Stylophora pistillata

Genomic Location: Spis.scaffold7:1089921...1098363
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ankmy1

ATGCGAAGGCAGACAAAATTTTCTTCTACGAATCGTGTGTTGCGATTAAACACAAGCCAATACCGACGGGAATACAAGAGCGGTGCTGTTTATCACGGCGAACTCGAGGGAAGCAAGAAGAGTGGTAAAGGGATCTTTAAGTGGCCAAATGGAGCTTGCTATGACGGAGAATACGTAGATAACACAAGACATGGCTATGGAAAACAATATTGGCCTGACGGCTCAACGTACGAAGGCGCTTTTGTACGCGATCTTCGACATGGAGCTGGAACGCTGACATGGGCTGATAAAGAGAGCTATACAGGAGAGTTCTATCGAGACAGACGGCACGGAAAAGGAGTATATACTTGGCCTGATGGTACAAAATTTGAAGGTCACTTTGAAAATGACAAGAAGCAGGGTTTTGGTACATTTTTCTTTCCAAGCAGCAATAAATTTGAGGGAATATATCGCAGAGATGAGAGGGATGGTCCAGGAATATTGACATACTCTAATGAGGAACAAGATGTTGGACTCTGGTGTGGGGAACGGTTAATTAAACTGTGCTCTGTAATGGACAGTGCCTTCCTCTTCCAGCACTACTCTAACTACAATGTGAATGCTGGTCAGAATTTGTCTAACAGAGTAGTACGAGCCAACACAGCAAGGGAGAATGTAAGAAACAATACCCCTTCATTGCAAGACTTTGAAGGTACCAATGACATGGAATCAAGCAAAGTGTTGTCTCAAATTCCAAGTTCTTTCTCATACATGGATATTTTAGAAGGTGTTCGTGGCAACAAAGGTTCTAAAGGACCTGTTGAACGTGCATCAGAGGAGCTTTTAAAATCATCAGCAGCTGGAGATTGTTTCAAAGTTCGCAGTTTGATTGAAAGTGGAAAAGTTCATGTGGATGTTGCCGATAAGACGGGCTACACTGCTTTACTAGCTGCTGCAGTCAATTGTCAAAGAGATGTTATTAACTGCTTACTGGATAATGGTGCCAATGTCAACAAGTTGAATGATGAGGGGTTATCAGTTCTTGCTGCCTGTCATGTTCTCTTCTACACAAAACACACCTGGAAGAATAACATTGCTGAGACCATTCCTGATGAAAATTTGTTTAATTGCATCCAGGAAGATAAACAGAAAGGAACTTATATTCATCGGAATTATCGGCAAAGTGTTGTGCTTGAGGAAAGCAGAGTGGAAACAAACCCGATTGGTTCTGGTGATACTGAGGAAAACTCAGAAGATGAATGTGTTGAAAATATCCAAAATGAAAACTGTAATCAAGATGAAACAAACAATACGAAGATGCCATACAAAATCATTGAGTTCAACGACAGAACTGTTGCAGATACAGCTGCTGATAGTGCAGAGCTAGTAAACAACCTCAACAATTGTATACAAAGTAAATTAGATTTAAGTAGAACTGGTTTTAAGAAAACTACAGACAACAAAGGAACAAAACTGATCATAGAACATGGTGGGAATAACATGCTTGACTCTGGAATGTTATTGTCAATCAGTGATGTTTCATCAACACATGAGGGGAATGATCCAAAAACTGGTCAATTTAGTGTGTTAGACCCAGCATTGTTTAGCATCATGAGTGCCATGACTAGTACAAGGCAGCCATCAGACTCAGGAGATGATTTACATAGTGAAAACAGCATGGACCAAAACAAACAAGTTTTACTGGCTGTGCAAAGGCGTCCTCATCTTGAAGCAACAGTTCGTCTGTTGCTCTGGAGAGGTGCAAATCCGAATGCATCATCTCTTCCAATGCCAGTTCTGTTTTTTGCTGTGAAAGCCTCAGACACTGCAGCTGTTGAGATTTTACTCCAGAAAGGAGCTGACACCTCTGCAAAATTATCAAAAGAACAATCAGGAATTGCACCTCTGCATATTGCTGTAGCTCTGCCCGACCAAACAGGAGTGGAGATCACAGAGTTGTTGCTGAAGGCAGGTGCTGACCCAAACATAAGAGATTGTGCATTTGGTTCTGAAGAAAATGGAAGAACTCCAGCACATATAGCCTGTTCAAGAGAAGATAATGACCAGGTATCATGTGCTGTTGTATGGCTTTTGTTAGAGTATGGAGCCAATCCGGATCTTTTGTGTGAAGGACATTCTGCCCTTTCCTTGGCAATCTGCAGTGGAAATGACTTGGCTGTAGACACACTTCTGAAACATGGAGCTAACCCCAGTCTGCGTCTCTCCAAGGGAGTCGGTTCGGCACTTTGTGGTGCTACTTCATTCATGGCAGAAAGGAGAAGGACTCCAGCTGGAAGAATTAAGCTAATAAACAAGATCATGAGAGCTGGTGCAAACATTTTGTCGCCCATAATCGTGAATCAGAAATATCCACCTGGAACCGTTGTTGATTATGCCTACAGTGTATTTTATCAGGACCGCAAGATTGCTCACACTCCATACCATGCCCTAACAGCAACAGAACGCGAGTGTTACAATGCGCGCCGGGAAATGTTGGATCATCTGGGGGATCTGCTGAGGACTCAAGTGTTGAATAAAGAAAAGGAACTGATAGAGAAACAGCTGAAGGAAGTGAAAGGACAGGCTGAAGGAACGCAGAATGTCGATAAAAGTCTACAGTCTACCTGGGGTATCCTGAAGTCATCTGACAGACTGAGCAGGCTGAGAGAGCACGACACCTCCCCTGCTGAAAAAAGAGACGCCTTGAAATGTAGCAGGGTGAGCTTCAGACTTGAAAATGAGGTCTCTGGTGAAGACGACGGGGAGGCCCACGAAATCGAGGCTCAAGCAGATCGTGAAGTCGAGGCCATTACTGGAATCGATGGCGAAAGTCCTGGAATGGATAATGAGCAAGAGAAAGATCGCATGACGTCAGAAATGTCACCCGCTCCTGATGCTAGCAAGGAAAGCACTCCATGTTCTCTAAGGTCCAGCGCTCCCGAGCCGTCCTTGAAACCCCAGTCTCCAGGCCGAGACGAAAACTGTGGACTGCGAATTGCTGTGACTAAAGCCGCTGATCACATGAGTATATCTGCACTGGCGACTCAAACTTTGAAACAACGAAAGCAAGTGATGAAAAACCGCTTTCGATACTGTTATGAGTGCGGACGCTCAATAGCAATTCGCTTGTCGGCCTGTACAAGATGTAAAGAGGTCTTCTATTGCAGTAAGTCGTGTAAACTGAAGGCGTGGAATGCGAGGCACAGGGAGGAATGTGTCCGACTGACAGGTGGTGGGATGAAGACAACTTCCAACCGGCGAGCAGAAAGCCCCACCCCCACCACTGACCCTGATGTACCTCCTCCCTCTACCACTCCCTCAGGGTCTCAGAGGAAGGCGCCTTCACGGGGAAAGGGAGAAAAAGTGCGTAAACCACAGACTGTTTCGGCTTCGCGAGTGTCTAAGCGGAATTCTTCTCCGTTGGCAACGAAATTCAAGAAATAA

Transcript

rna-Spis1142_mrna

CAGTCAATATTTGTCACGTCGATCGCCGTAAGAATCCTCTTGTATACTGTCGAGCATCGCAGTTCTTTATAAGAGAAGTATCTTACTGGTATGTTATGAGGTATGCGAAGGCAGACAAAATTTTCTTCTACGAATCGTGTGTTGCGATTAAACACAAGCCAATACCGACGGGAATACAAGAGCGGTGCTGTTTATCACGGCGAACTCGAGGGAAGCAAGAAGAGTGGTAAAGGGATCTTTAAGTGGCCAAATGGAGCTTGCTATGACGGAGAATACGTAGATAACACAAGACATGGCTATGGAAAACAATATTGGCCTGACGGCTCAACGTACGAAGGCGCTTTTGTACGCGATCTTCGACATGGAGCTGGAACGCTGACATGGGCTGATAAAGAGAGCTATACAGGAGAGTTCTATCGAGACAGACGGCACGGAAAAGGAGTATATACTTGGCCTGATGGTACAAAATTTGAAGGTCACTTTGAAAATGACAAGAAGCAGGgttttggtacatttttctttccaagCAGCAATAAATTTGAGGGAATATATCGCAGAGATGAGAGGGATGGTCCAGGAATATTGACATACTCTAATGAGGAACAAGATGTTGGACTCTGGTGTGGGGAACGGTTAATTAAACTGTGCTCTGTAATGGACAGTGCCTTCCTCTTCCAGCACTACTCTAACTACAATGTGAATGCTGGTCAGAATTTGTCTAACAGAGTAGTACGAGCCAACACAGCAAGGGAGAATGTAAGAAACAATACCCCTTCATTGCAAGACTTTGAAGGTACCAATGACATGGAATCAAGCAAAGTGTTGTCTCAAATTCCAAGTTCTTTCTCATACATGGATATTTTAGAAGGTGTTCGTGGCAACAAAGGTTCTAAAGGACCTGTTGAACGTGCATCAGAGGAGCTTTTAAAATCATCAGCAGCTGGAGATTGTTTCAAAGTTCGCAGTTTGATTGAAAGTGGAAAAGTTCATGTGGATGTTGCCGATAAGACGGGCTACACTGCTTTACTAGCTGCTGCAGTCAATTGTCAAAGAGATGTTATTAACTGCTTACTGGATAATGGTGCCAATGTCAACAAGTTGAATGATGAGGGGTTATCAGTTCTTGCTGCCTGTCATGTTCTCTTCTACACAAAACACACCTGGAAGAATAACATTGCTGAGACCATTCCtgatgaaaatttgtttaattgcaTCCAGGAAGATAAACAGAAAGGAACTTATATTCATCGGAATTATCGGCAAAGTGTTGTGCTTGAGGAAAGCAGAGTGGAAACAAACCCGATTGGTTCTGGTGATACTGAGGAAAACTCAGAAGATGAATGTGTTGAAAATATCCAAAATGAAAACTGTAAtcaagatgaaacaaacaatacgAAGATGCCATACAAAATCATTGAGTTCAACGACAGAACTGTTGCAGATACAGCTGCTGATAGTGCAGAGCTAGTAAACAACCTCAACAATTGTATACAAAGTAAATTAGATTTAAGTAGAACTGGTTTTAAGAAAACTACAGACAACAAAGGAACAAAACTGATCATAGAACATGGTGGGAATAACATGCTTGACTCTGGAATGTTATTGTCAATCAGTGATGTTTCATCAACACATGAGGGGAATGATCCAAAAACTGGTCAATTTAGTGTGTTAGACCCAGCATTGTTTAGCATCATGAGTGCCATGACTAGTACAAGGCAGCCATCAGACTCAGGAGATGATTTACATAGTGAAAACAGCATGGaccaaaacaaacaagtttTACTGGCTGTGCAAAGGCGTCCTCATCTTGAAGCAACAGTTCGTCTGTTGCTCTGGAGAGGTGCAAATCCGAATGCATCATCTCTTCCAATGCCAGTTCTGTTTTTTGCTGTGAAAGCCTCAGACACTGCAGCTGTTGAGATTTTACTCCAGAAAGGAGCTGACACCTCTGCAAAATTATCAAAAGAACAATCAGGAATTGCACCTCTGCATATTGCTGTAGCTCTGCCCGACCAAACAGGAGTGGAGATCACAGAGTTGTTGCTGAAGGCAGGTGCTGACCCAAACATAAGAGATTGTGCATTTGGTTctgaagaaaatggaagaacTCCAGCACATATAGCCTGTTCAAGAGAAGATAATGACCAGGTATCATGTGCTGTTGTATGGCTTTTGTTAGAGTATGGAGCCAATCCGGATCTTTTGTGTGAAGGACATTCTGCCCTTTCCTTGGCAATCTGCAGTGGAAATGACTTGGCTGTAGACACACTTCTGAAACATGGAGCTAACCCCAGTCTGCGTCTCTCCAAGGGAGTCGGTTCGGCACTTTGTGGTGCTACTTCATTCATGGCAGAAAGGAGAAGGACTCCAGCTGGAAGAATTAAGCTAATAAACAAGATCATGAGAGCTGGTGCAAACATTTTGTCGCCCATAATCGTGAATCAGAAATATCCACCTGGAACCGTTGTTGATTATGCCTACAGTGTATTTTATCAGGACCGCAAGATTGCTCACACTCCATACCATGCCCTAACAGCAACAGAACGCGAGTGTTACAATGCGCGCCGGGAAATGTTGGATCATCTGGGGGATCTGCTGAGGACTCAAGTGttgaataaagaaaaggaaCTGATAGAGAAACAGCTGAAGGAAGTGAAAGGACAGGCTGAAGGAACGCAGAATGTCGATAAAAGTCTACAGTCTACCTGGGGTATCCTGAAGTCATCTGACAGACTGAGCAGGCTGAGAGAGCACGACACCTCCCCTGCTGAAAAAAGAGACGCCTTGAAATGTAGCAGGGTGAGCTTCAGACTTGAAAATGAGGTCTCTGGTGAAGACGACGGGGAGGCCCACGAAATCGAGGCTCAAGCAGATCGTGAAGTCGAGGCCATTACTGGAATCGATGGCGAAAGTCCTGGAATGGATAATGAGcAAGAGAAAGATCGCATGACGTCAGAAATGTCACCCGCTCCTGATGCTAGCAAGGAAAGCACTCCATGTTCTCTAAGGTCCAGCGCTCCCGAGCCGTCCTTGAAACCCCAGTCTCCAGGCCGAGACGAAAACTGTGGACTGCGAATTGCTGTGACTAAAGCCGCTGATCACATGAGTATATCTGCACTGGCGACTCAAACTTTGAAACAACGAAAGCAAGTGATGAAAAACCGCTTTCGATACTGTTATGAGTGCGGACGCTCAATAGCAATTCGCTTGTCGGCCTGTACAAGATGTAAAGAGGTCTTCTATTGCAGTAAGTCGTGTAAACTGAAGGCGTGGAATGCGAGGCACAGGGAGGAATGTGTCCGACTGACAGGTGGTGGGATGAAGACAACTTCCAACCGGCGAGCAGAAAGCCCCACCCCCACCACTGACCCTGATGTACCTCCTCCCTCTACCACTCCCTCAGGGTCTCAGAGGAAGGCGCCTTCACGGGGAAAGGGAGAAAAAGTGCGTAAACCACAGACTGTTTCGGCTTCGCGAGTGTCTAAGCGGAATTCTTCTCCGTTGGCAACGAAATTCAAGAAATAACGGTGTGTTGTAGGAAAAAGGTGTGTGTTTTGGTTTGAAGAGACCAGCAGAATTACCTTTACTATCTAGAACAGCGCACCTTGGCTTTTAAAAATTAGCAGAATGGCAGCTCAACAGAAAAGCAGCCCTGACCCTGAATAATCATCATGATTAAAGTGTTACGCaattagtttttcatttctcGTCACAATCATTTAATACCATAGTTTCTTTGCTGAACCTGAAAGTGAACAGAGAGAATGAACGTAATAATAATAGAAACCTAATTAAATTGTCACCAAAGTTGTATTTGTTGGCGGGCCGTCTAAGATTTCTAGAGCCGGTGAATTACACTCAGTTCTGACCTAAGTAACGCTTCGCCTATCATTAGTAGTTGTATTCGGGGTTTAAAGTGAATATTTAAATTCCATTTTTGCTTTGGCCCAGCCCTAAAATGCCCTGTAAGCCAACGGAACACATGGAAACTTTTTATCCATTCTTAAGTCGCGCTTCATTGGAAATTGATGCAGTGACGgtcgttttgattttttcagtCTCTCCAATTATTTTGGCGGTAATAGGTGtgtgtttcgtttgttttgttttgctttatttattAGTATCGTTGTAATTGGGTGTTGATACAAGATTTCTTCAGTGGTTTTATTTATAATCGAAATCTTTGTATATTTAACTAACCACTCGTTTTGCACAATATGATTATATTTATgaggaataaataaaaag

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF02493 all species →	MORN	MORN repeat	Repeat	Interproscan
PF01753 all species →	zf-MYND	MYND finger	Domain	Interproscan
PF00023 all species →	Ank	Ankyrin repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR003409 all species →	Repeat	MORN repeat	Interproscan
IPR002893 all species →	Domain	Zinc finger, MYND-type	Interproscan
IPR053064 all species →	Family	Ankyrin repeat and MYND domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15897 all species →	ANKYRIN REPEAT AND MYND DOMAIN PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24631	ANKMY1, ZMYD13; ankyrin repeat and MYND domain-containing protein 1	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.