Gene detail

Detailed information of PFX33919.1 in Stylophora pistillata

Genomic Location: Spis.scaffold7:1182793...1188271
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

DNAJC21

ATGCCGCGCTGTTGTTATGAAGTATTGGGGGTCGAAAGAGATGCTAGTGATACTGAGATAAAGAAATCTTACCGAAGACTTGCTCTGAAATGGCACCCAGATAAAAACACTGACAACTCTGAGGAAAGTACCCGAGTCTTTACAGAGATCCAACAAGCTTATGAAGTGCTTATAGACCCACAGGAGCGAGCATGGTATGATAAACATCGCGAACAAATCATCAGGGGAGGAGATGACTATGTAGACAACAGTATTAATTTGATGAAGTACTTCAGCGCCAGTGTTTATTGCGGTTTCGGAGACGACGAACAAGGATTTTATGCGGTTTATACCAATGTTTTCAAAATTATAACGAAAGAAGATGCTGAATTTGCGGATGGTCAAGATCTGGATGTACCTGAGTTTGGAACATCCACGAGTGATTATGAGGAAGTTGTTCAACCTTTTTATGCTTACTGGCAGAGCTACTCGACTCTGAAATCGTACGTCTGGTTGGAGAAATACGACATCAGAGAGGCACCCAATCGAAGAGTTCAAAGGTTGATGGAAAAAGATAACAAGAAAATCCGAGATGCCGTGAAGAAGGAGAGAAATGAAGAAGTTCGCGCCTTGGTAAAATTCGTTCGTAAAAGGGACAAGCGCGTCAAAGCATATCTTGAGTTGCTTAGGGAAAAAGACGAGGAAAGGAAGCGAATTACAGAACAAAAACGTCTGGAAGCTTTGCGAGAACGGGAGAAGATGTTGAAAGCGTACAAGGAAGAGAGCTGGGCCTCCTTGTCTGGATTGGAGGAGGACTTGGTCCAAATGAATGTTCATTTGGACAGTGAATTCGGCAGAGATAATGACATCATTGACAGCCAATCGGATGAAGAGGAGGTACAACAATATTATTGTGTGGCTTGTGACAAAGCGTTTAAAACAGAGAAGGCGCTAGTTAACCACGAGAAGTCGCGGAAACACAAAGACAAGGTCGCTGCAATCAAACGAGAAATGGCCGACAGTGAAGATATCGATGAGCTTGCGCTACTTAATGGAGAAAATGGCGTGAATGAATATTACGATACCAGAACAGAATCAGAGTATTTTAGTAAGAGACAGCATAGTGTCGACGAGACTGGCACAGATTTTGTGAGTGTTGGAGAATTAGATCTGATGGACTCCGTAGATCTGTCTACCATGAGAATTAAAGGTAACAATCGGTATAAAGTAAAAGTGTTGCACGAGAGGAAACGAGCTTTATCAGGAATCGGAGAGGGTGATTTGGAAGGGGGAGGGGAAGAGGTAGAAGCCAACAACGAAGAGAGCAATGGAAATGAAGCAAAATCAGGGGAACGAGAGGCACATGAAAATATAGGCAACGAAAAGAGCGAGGAAAACGTAAATGAAGACGATAGTAGGGAATCTTTGTCAAACGCTACAACAACAACAACAACTGATATTGATAATCAAGAGACGGAAGACGAGAAAGAGAACTTGGAATCACAAGAATCTGGGGGCGATAGACAGACGACTGGTGCCGTCACAGAGAAAAGAAAACCCAAAGAAGGAAATAAAAATTCACCTCAAGCGAGTAAAGAGCCATCAGCCAATTTTTTTAAGTGCAACGTGTGCCAAGGTTCATTTCCGACAAGAAATAAAATGTTCCAACACATAAAAGAGCTTGGACATGCACTTAAACTGGACACAAATCGTGAAGCCGATGATTCGCAACGTCAGGGCAAGAAGAAAAACAAGAAGAAACACTGTCAACGTATGTTTGCCCAATTTACTAAACCCAGGTTAAACATGATACATAGCATCTTGAGTTGTGCCAGGCACACCATCATGGTAGTTAAAGAATTCGTGGAAGTGAAGATAGTTAGACGAGATGCTGAACAAGCAGCAGAGAGGAGAGTTCAGACCAGACCCATTTCTTCCAGCGTGCGCTGGAGTTCACCTTCCTGTAGAACAAAAGTATCAGAGGTAGAGATTTTACAGATGAAAGAACTCAGGCAAGACCCATTTCCTCCAAAGCACTGCGCAGTTCTGCTTCCTGTGGAAAAAAGTATGAAAGCAAGGCAAAGAGGAAGCTCAGAGGAAAGAATTAGAAAAGATAAAAAGGGCACTTAG

Transcript

rna-Spis1149_mrna

ATGCCGCGCTGTTGTTATGAAGTATTGGGGGTCGAAAGAGATGCTAGTGATACTGAGATAAAGAAATCTTACCGAAGACTTGCTCTGAAATGGCACCCAGATAAAAACACTGACAACTCTGAGGAAAGTACCCGAGTCTTTACAGAGATCCAACAAGCTTATGAAGTGCTTATAGACCCACAGGAGCGAGCATGGTATGATAAACATCGCGAACAAATCATCAGGGGAGGAGATGACTATGTAGACAACAGTATTAATTTGATGAAGTACTTCAGCGCCAGTGTTTATTGCGGTTTCGGAGACGACGAACAAGGATTTTATGCGGTTTATaccaatgttttcaaaattataacGAAAGAAGATGCTGAATTTGCGGATGGTCAAGATCTGGATGTACCTGAGTTTGGAACATCCACGAGTGATTATGAGGAAGTTGTTCAACCTTTTTATGCTTACTGGCAGAGCTACTCGACTCTGAAATCGTACGTCTGGTTGGAGAAATACGACATCAGAGAGGCACCCAATCGAAGAGTTCAAAGGTTGATGgaaaaagataacaagaaaaTCCGAGATGCCGTGAAGAAGGAGAGAAATGAAGAAGTTCGCGCCTTGGTAAAATTCGTTCGTAAAAGGGACAAGCGCGTCAAAGCATATCTTGAGTTGCTTAGGGAAAAAGACGAGGAAAGGAAGCGAATTACAGAACAAAAACGTCTGGAAGCTTTGCGAGAACGGGAGAAGATGTTGAAAGCGTACAAGGAAGAGAGCTGGGCCTCCTTGTCTGGATTGGAGGAGGACTTGGTCCAAATGAATGTTCATTTGGACAGTGAATTCGGCAGAGATAATGACATCATTGACAGCCAATCGGATGAAGAGGAGGTACAACAATATTATTGTGTGGCTTGTGACAAAGCGTTTAAAACAGAGAAGGCGCTAGTTAACCACGAGAAGTCGCGGAAACACAAAGACAAGGTCGCTGCAATCAAACGAGAAATGGCCGACAGTGAAGATATCGATGAGCTTGCGCTACTTAATGGAGAAAATGGCGTGAATGAATATTACGATACCAGAACAGAATCAGAGTATTTTAGTAAGAGACAGCATAGTGTCGACGAGACTGGCACAGATTTTGTGAGTGTTGGAGAATTAGATCTGATGGACTCCGTAGATCTGTCTACCATGAGAATTAAAGGTAACAATCGGTATAAAGTAAAAGTGTTGCACGAGAGGAAACGAGCTTTATCAGGAATCGGAGAGGGTGATttggaagggggaggggaagaggTAGAAGCCAACAACGAAGAGAGCAATGGAAATGAAGCAAAATCAGGGGAACGAGAGGCACATGAAAATATAGGCAACGAAAAGAGCGAGGAAAACGTAAATGAAGACGATAGTAGGGAATCTTTGTCAAAcgctacaacaacaacaacaactgataTTGATAATCAAGAGACGGAAGACGAGAAAGAGAACTTGGAATCACAAGAATCTGGGGGCGATAGACAGACGACTGGTGCCgtcacagagaaaagaaaacccaaagaaggaaataaaaattcacCTCAAGCGAGTAAAGAGCCATcagccaatttttttaagtgcaaCGTGTGCCAAGGTTCATTTCcgacaagaaataaaatgttccAACACATAAAAGAGCTTGGACATGCACTTAAACTGGACACAAATCGTGAAGCCGATGATTCGCAACGTCAGggcaagaagaaaaacaagaagaaacACTGTCAACGTATGTTTGCCCAATTTACTAAACCCAGGTTAAACATGATACATAGCATCTTGAGTTGTGCCAGGCACACCATCATGGTAGTTAAAGAATTCGTGGAAGTGAAGATAGTTAGACGAGATGCTGAACAAGCAGCAGAGAGGAGAGTTCAGACCAGACCCATTTCTTCCAGCGTGCGCTGGAGTTCACCTTCCTGTAGAACAAAAGTATCAGAGGTAGAGATTTTACAGATGAAAGAACTCAGGCAAGACCCATTTCCTCCAAAGCACTGCGCAGTTCTGCTTCCTGTGGAAAAAAGTATGAAAGCAAGGCAAAGAGGAAGCTCAGAGGAAAGAAttagaaaagataaaaagggCACTTAG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00226 all species →	DnaJ	DnaJ domain	Domain	Interproscan
PF12171 all species →	zf-C2H2_jaz	Zinc-finger double-stranded RNA-binding	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR051964 all species →	Family	Multifunctional chaperone and stress response protein	Interproscan
IPR018253 all species →	Conserved_site	DnaJ domain, conserved site	Interproscan
IPR001623 all species →	Domain	DnaJ domain	Interproscan
IPR036869 all species →	Homologous_superfamily	Chaperone J-domain superfamily	Interproscan
IPR022755 all species →	Domain	Zinc finger, double-stranded RNA binding	Interproscan
IPR003604 all species →	Domain	Matrin/U1-C-like, C2H2-type zinc finger	Interproscan
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44029 all species →	DNAJ HOMOLOG SUBFAMILY C MEMBER 21	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09506	DNAJA5; DnaJ homolog subfamily A member 5	-	Chaperones and folding catalysts	ko03110	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.