Gene detail

Detailed information of PFX34052.1 in Stylophora pistillata

Genomic Location: Spis.scaffold7:906317...922622
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

RB1

ATGGAGGCTAAGGAGTGGTTTGATAACTTTTGCCAGCAAGTAGAATTGGAGGAAAAATGCAAAGAGAAGGCCTGGAATGTTTGGGAGTCTGTTTCTTTAAAAATTCAAGAAACATCAAAGAATACTTTAATTCCATGGTTTATATGTGCCATTTACGTTACAAATTGTGACACCAGATTCAATAGTGCTCAACAGTCTGCTACTAAAAGTAGCTGTTCATTGAGCAAGCTATTGAGGGAAGCTAAAATAAGTATGGTAGAATTCTTCAAGGTGGTGAAACAGTTCAGTTCAGTTTGGAAAGTTGGTTCTCCTGTTACTGATCACCTTACTGAAGTAAAGAAAACATTTTGTATATCTGCTGCCCTGTTCCACAAGTTTCAAAGAGTAATGCCTGTGGTTTTCAGGGGTTGTCAAGACTTATGTGACAGTGAAGAGAGAAGGGAAACATTAAGTAAAACATGCTGGCTTTTATATCTTGTCTACAAAGGCTGGAATTCTAACCAGGTGAAAGAACTGATGACAGCATTCAATCTCTTGTTGTGTTGTGTGGATTATGTACACAATAAATTTGTGCAGCAGCTACAGACAGGGGAAGGGACAAATATTCAAGAAAGTGTGCACGATGGAATTCTTCCCAATCTATGTGAGGAATTGACTGTACCTCTTTCAAATGTTGCCTTAATCTATTCACAGCACTTTAAACCATTTTTGGAGAAGTTTTTTGAGGTTCAAGGAAATGCAAGGAACTTGGTGAAAATTGGTGATTTAAATTCTATATATGAGGAAGTCTACACAAGATCTGGAGATGTTGATGAGAGGGACTTCTTTGACAAAAATGGCTATTTGTGGATTCCTTTCAATCAAGAAGCCAGCAAAGTGGAACATGAAAGTGCTGGAACTCTAAATGGTGGAACTCCGTGTACCAATACTTCTCTCCATGATGAATTTCAACCTGTTTTGGATTCCTCAAAAGCTGATTCAGAACTAAGCAGAAATTCCTTCCCACAAAGCTCATCGTCACTCACTGACTTAAGAACGACACTTGAAGAAAGGAGTCATCTGCCAGGTCAAGAACTGATAAGGTTCTGGGGATCTTGCCGAAGAAATCCTTTGAGTCTCATACAAGCCAAATTAACATCCATTCAGGACTGTTTCCTGAAAGGATTTGATGACACAGCAGTTTGTGAAGGGGACAGTAATATTTCAATTCAGATTTTTGTCCTGGCTAAGAAACTTTATTATAGAGTAATGGAGGCTATGCTGTTAGCAGAAGAGAAAAGATTATCTTGTAGTGATTTCAGTGCTTTACTGAATAGTGAAGCATTCCATGTTTCCCTTTTGGCCTGTTCTCTTGAAGTTGTTATGGCGGACAAAGGATTGTCATGGCCAACTTTAGCATTTCCTTGGATTCTCGGCATTTTGAAGTTGGAGGCATTTGATTTTTTCAAGGTCACTGAAAGTTTCATTCTTCATGAGCCACTTCTTAATAGCAGTTTAATTAAGCATATAAATCGAATAGAGGAACAAGTGCTGGAGAATTTGGCATGGAAACTGGGTTCACCTTTGTTAAAAGCAATGGAAATCTATCATCCCCACTCTGACCCAGGAGCAGTAGGCTCTGTTCAGCAGCAAAAGAAGTCGCAGCCTCTAGATTTGTTCTTGAGAAGAGTAAACCAGCTGGCCTACCATCGTTTAACAACGCTTTGTAATAAACTTGACATCAGTGACACGCTGGTTGGTCACATGTGGACATGCTTGGAACAGTCACTTAAATTGCAGTGGCAGTTGATGGTTGACCGTCACTTGGACCAGATGTTTTTGTGTGCAGTGTACGCCATTTCTAAAGTAGTCGGAAAGGAAATTCAATTTAAACAGATTGTCACTGTCTACAAACGATTGCCATTTTCATCGGCACAGGTGTACAAAGGAACGTCCTGCAGAGAACAACAATCAATCATTGAATTCTACAACAAGGTGTACATGGTGACAATGAAGTCCACCATTCTTCAATTTGCACCAAACAAGAATCCTCCTGTTTCACCTGCTCCAAGAAGCGCAGTAAGGGTTCCAGGGAAGAAGAATTTTTATTTATCTCCTTTACGAAGCTCTCCAGGCGAAACTTTAACTCCAAAATCAAGGTCATCGTTCAGCTTCGGGGAGTCTCCAGGGTCCGCTGACCGTGAGAGCCTCTCAAGAATCAATGCCTCCGTACGAGCAGCAGTACACAGTCAACCTAAGGTACCACAGAAGAGACTGCGCTTTGACGACTGTGACCAAACTGAACCAGGCCCTGTCCTCACGAACGGCCACTCGACAGAAAAGGAGACTGGGTCACATTTGAATGGAACGAGGGGTTCGAAAGAAGAGGAGGAGAAAGAGGATGAAAGTTAA

Transcript

rna-Spis1127_mrna

ATGGAGGCTAAGGAGTGGTTTGATAACTTTTGCCAGCAAGTAGAATTGGAGGAAAAATGCAAAGAGAAGGCCTGGAATGTTTGGGAgtctgtttctttaaaaattcaagaaacaTCAAAGAATACTTTAATTCCATGGTTTATATGTGCCATTTACGTTACAAATTGTGACACCAGATTCAATAGTGCTCAACAGTCTGCTACTAAAAGTAGCTGTTCATTGAGCAAGCTATTGAGGGAAGCTAAAATAAGTATGGTAGAATTCTTCAAGGTGGTGAAAcagttcagttcagtttggAAAGTTGGTTCTCCTGTTACTGATCACCTTactgaagtaaagaaaacattttgtataTCTGCTGCCCTGTTCCACAAGTTTCAAAGAGTAATGCCTGTGGTTTTCAGGGGTTGTCAAGACTTATGTGACAGTGAAGAGAGAAGGgaaacattaagtaaaacatgctGGCTTTTATATCTTGTCTACAAAGGCTGGAATTCTAACCAGGTGAAAGAACTGATGACAGCATTCAATCTCTTGTTGTGTTGTGTGGATTATGTACACAATAAATTTGTGCAGCAGCTACAGACAGGGGAAGGGACAAATATTCAAGAAAGTGTGCACGATGGAATTCTTCCCAATCTATGTGAGGAATTGACTGTACCTCTTTCAAATGTTGCCTTAATCTATTCACAGCACTTTAAACCATTTTTGGAGAAGTTTTTTGAGGTTCAAGGAAATGCAAGGAACTTGGTGAAAATTGGTGATTTAAATTCTATATATGAGGAAGTCTACACAAGATCTGGAGATGTTGATGAGAGGGACTTCTTTGACAAAAATGGCTATTTGTGGATTCCTTTCAATCAAGAAGCCAGCAAAGTGGAACATGAAAGTGCTGGAACTCTAAATGGTGGAACTCCGTGTACCAATACTTCTCTCCATGATGAATTTCAACCTGTTTTGGATTCCTCAAAAGCTGATTCAGAACTAAGCAGAAATTCCTTCCCACAAAGCTCATCGTCACTCACTGACTTAAGAACGACACTTGAAGAAAGGAGTCATCTGCCAGGTCAAGAACTGATAAGGTTCTGGGGATCTTGCCGAAGAAATCCTTTGAGTCTCATACAAGCCAAATTAACATCCATTCAGGACTGTTTCCTGAAAGGATTTGATGACACAGCAGTTTGTGAAGGGGACAGTAATATTTCAATTCAGATTTTTGTCCTGGCTAAGAAACTTTATTATAGAGTAATGGAGGCTATGCTGTTAGCAGAAGAGAAAAGATTATCTTGTAGTGATTTCAGTGCTTTACTGAATAGTGAAGCATTCCATGTTTCCCTTTTGGCCTGTTCTCTTGAAGTTGTTATGGCGGACAAAGGATTGTCATGGCCAACTTTAGCATTTCCTTGGATTCTCGGCATTTTGAAGTTGGAGGCATTTGATTTTTTCAAGGTCACTGAAAGTTTCATTCTTCATGAGCCACTTCTTAATAGCAGTTTAATTAAGcatATAAATCGAATAGAGGAACAAGTGCTGGAGAATTTGGCATGGAAACTGGGTTCACCTTTGTTAAAAGCAATGGAAATCTATCATCCCCACTCTGACCCAGGAGCAGTAGGCTCTGTTCAGCAGCAAAAGAAGTCGCAGCCTCTAGATTTGTTCTTGAGAAGAGTAAACCAGCTGGCCTACCATCGTTTAACAACGCTTTGTAATAAACTTGACATCAGTGACACGCTGGTTGGTCACATGTGGACATGCTTGGAACAGTCACTTAAATTGCAGTGGCAGTTGATGGTTGACCGTCACTTGGACCAGATGTTTTTGTGTGCAGTGTACGCCATTTCTAAAGTAGTCGGAAAGGAAATTCAATTTAAACAGATTGTCACTGTCTACAAACGATTGCCATTTTCATCGGCACAGGTGTACAAAGGAACGTCCTGCAGAGAACAACAATCAATCATTGAATTCTACAACAAGGTGTACATGGTGACAATGAAGTCCACCATTCTTCAATTTGCACCAAACAAGAATCCTCCTGTTTCACCTGCTCCAAGAAGCGCAGTAAGGGTTCCAGGgaagaagaatttttatttatctcctTTACGAAGCTCTCCAGGCGAAACTTTAACTCCAAAATCAAGGTCATCGTTCAGCTTCGGGGAGTCTCCAGGGTCCGCTGACCGTGAGAGCCTCTCAAGAATCAATGCCTCCGTACGAGCAGCAGTACACAGTCAACCTAAGGTACCACAGAAGAGACTGCGCTTTGACGACTGTGACCAAACTGAACCAGGCCCTGTCCTCACGAACGGCCACTCGACAGAAAAGGAGACTGGGTCACATTTGAATGGAACGAGGGGTTCGAAAGAAGAGGAGGAGAAAGAggatgaaagttaa

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08934 all species →	Rb_C	Rb C-terminal domain	Domain	Interproscan
PF01857 all species →	RB_B	Retinoblastoma-associated protein B domain	Domain	Interproscan
PF11934 all species →	DUF3452	Domain of unknown function (DUF3452)	Family	Interproscan
PF01858 all species →	RB_A	Retinoblastoma-associated protein A domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036915 all species →	Homologous_superfamily	Cyclin-like superfamily	Interproscan
IPR015030 all species →	Domain	Retinoblastoma-associated protein, C-terminal	Interproscan
IPR028309 all species →	Family	Retinoblastoma protein family	Interproscan
IPR002719 all species →	Domain	Retinoblastoma-associated protein, B-box	Interproscan
IPR024599 all species →	Domain	Retinoblastoma-associated protein, N-terminal	Interproscan
IPR002720 all species →	Domain	Retinoblastoma-associated protein, A-box	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13742 all species →	RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000785 all species →	Cellular Component	chromatin	Interproscan
GO:0000977 all species →	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0005667 all species →	Cellular Component	transcription regulator complex	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0030154 all species →	Biological Process	cell differentiation	Interproscan
GO:0051726 all species →	Biological Process	regulation of cell cycle	Interproscan
GO:2000134 all species →	Biological Process	negative regulation of G1/S transition of mitotic cell cycle	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06618	RB1; retinoblastoma-associated protein	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.