Gene detail

Detailed information of PFX34107.1 in Stylophora pistillata

Genomic Location: Spis.scaffold6:1511880...1516522
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-Spis994_mrna

GCAACGTAATTTTTGTCATAAGGATTAGCAAAGGGAAATAGAGATTGTCACGATTTTTCATCCATTTAGAGATGAATTATACACCAGAGACATTCTCAATAGGAGTTCCTGGAAACAGAGGAGTAAATTTTGTAGGCGGTAATGTAGATCTTAGTGGAACACTGATTATTAAGGCTCGTCTAGGGGATGATATACGATGCATTCCAATTCACAACGAAGACTTGACTTACGATGATCTACTGTTGATGATGCAAAGAGTTTATCGTGGTAAACTCAGTAGCACGGATGATATTACAATCAAATATAAGGATGAAGATGGCGATCTAGTGACTATTTTCGACAGTTCTGATCTTGCATTTGCACGAACAATATGCAGAATATTAAAGATTACATTGTTTGTGAATGGAGTACCCAGACCACCTGAGCACACACTAGTTGCTGAGTTTAGACGAGAATTAAGGGAGATAAGAGATAGGATTAATTATCTTCTCAATAGACTGGAAATTAAGGATGATAATGAGGATCATCAAGGGGGACAAGAACAGCCAAATGATAAACCAAGTATGCAAGgTCTCCCTAATGAAAGAACACTTCCTGCTCAAGTGCCTCCTAAACCGACCCCTGAGGTAACCATGTTTGATCCTCTTGCTAAGGAAAAGCCGCAACCAGACAGTTCAACAGCAAACATCTCAGGACAACTGTACCCCAGCACTGCAGGCACTACTGAAGGACTAGCTTCCAAGAACCAAGAGCCAACTTCACAAGGGTATCATCCACAGTCAGTCCCAGCATCACAGCAGATGCAGCTTCCGGGGCAGCAGAACATTACACCATCACCTGCAAACAAAGTGGCAGGGTCGTACGCCCAGCAAACTCAGTATCCTCAGCAGGCTAGCCAACCTGGACAAAATGCTCCACAGTCTTATGCTCCCACCTCCACCCAGACACAGTCTTCTTACCCAGGTATGACAAGTTCTGCATCAGGGTATCCAGCTAGCCAAccacagcagcagcagcagtataGTCAACCAAGTCAACAAAGTTACCCTCCACAAAGTCAGACTTACTCACCTGCAGGGGCAGCACCCTATTCAGCTACAGGACAGACACAGACACAGAGTTATCAGGGTTATGTACctcagcagcagcagcagcagcaacagcaacagcaacagcagccTGCCACACAGAATGCTTATGGAAGTACTCAAGGGTATATCAGCACCCAACCATATTCACAGCAGCAAGGGTACAATCAGTATGGTTATAATTATCCACAACAGCAGTCATATCCCACATACTGATACTTTTGGCCTATTGCCATGGAGGTGGTTTTTTGCTAACAATGTAAAAGATTTTGTTGTACCAACATCGTTTAGGTAATTGGGTTCAGTAGTACTTTGTAATGCAATTTACACAATGACTGACTTGCTATAGATTGAACAGTCAAATCTCTCTGGGGTGGACACTGTCAAAACAAATCCcttgattttgttgttgaaacaaGCTAAGTTTTTGTGACAGTGAAACGGAAGGGACTGATTCTGAGTGTCTCTTGTGTGCAGGTGTCTGCCCTATATGGGTGTCCATTCAGAGAGAAGTGATTTTCTTTCTATAATGACAGAAACCCTCAGACAACACAAAATAATTGTGTATACTGTATTTATTTGGCTCTGATTTTGGTTACAGAACACTTTAACTGCTACACTTTCTTTTTCAACCCCAGCTCAAGAGCTTATGATtaataaagaaagcaaaatgatCTTAAATTCTGTGTTTCAGCTcctcttaaaaatatttgtacttGGTCTAGTTTCCAATACATTCTCTTGCTAAGATTGACATCATCACTGTGAAACTTAATAACGACTGTcagtattgaaaatatttatggATTGTTTCAACTGAACCTTTGAAAGCAAAAGTGATTAGTTTGTCGCTTTGAGGTTTGCTTGTGCCAAAGTTTATTCTTTATTGGTACAAAACTGACTTGTCAGATCTAAATCACAAGAGGTCATGATTGGTTTGATTTTCACAGTGAGGTAATATAATACTTTTCAACCAAAAAATGGTCAAGACCCTTTGAACCTTGGGTGTGTACATAGAACTTAATGATGTTTGAATATACAGTTTGTCTTTAACTTAGAGACTGAGGAATTTCTTAACCAGTGTGAGTGAGCTACAGATTGAACTCTTAACTAAATAGTTGTAAAACTACTTTGACACGTGTGAAGAAGGTTTGGAACTTTTTAATTAACCATTCTTTTTCATGGTGACTTTCACaaccaaattttttaaaagtgctgTAACTTATTTTTGTAAAAACTATCCATCAGTGTAGGCTATGAAAAATGAAGATTGAAAGGTAAATGCCATCTAAACCATCTGGTAAATGTCATAAAATACGCAGAAGAGTCGAAGGCAATTGTCTTATTGAAAATAGGTGAGAGTTAAggttgacaataaaaaaaatt

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00564 all species →	PB1	PB1 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000270 all species →	Domain	PB1 domain	Interproscan
IPR034857 all species →	Domain	TFG, PB1 domain	Interproscan
IPR033512 all species →	Family	Protein TFG	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15335 all species →	PROTEIN TFG	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0006888 all species →	Biological Process	endoplasmic reticulum to Golgi vesicle-mediated transport	Interproscan
GO:0042802 all species →	Molecular Function	identical protein binding	Interproscan
GO:0048208 all species →	Biological Process	COPII vesicle coating	Interproscan
GO:0070971 all species →	Cellular Component	endoplasmic reticulum exit site	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09292	TFG; protein TFG	-	Thyroid cancer	ko05216	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.