Gene detail

Detailed information of PFX34120.1 in Stylophora pistillata

Genomic Location: Spis.scaffold6:396647...404082
NR annotation: no NCBI-NR hit recorded
Species abbreviation SPIST · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05510 all species →	Sarcoglycan_2	Sarcoglycan alpha/epsilon N-terminal domain	Domain	Interproscan
PF20989 all species →	Sarcoglycan_2_C	Sarcoglycan alpha/epsilon second domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008908 all species →	Family	Sarcoglycan alpha/epsilon	Interproscan
IPR048346 all species →	Domain	Sarcoglycan alpha/epsilon, N-terminal domain	Interproscan
IPR015919 all species →	Homologous_superfamily	Cadherin-like superfamily	Interproscan
IPR048347 all species →	Domain	Sarcoglycan alpha/epsilon second domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10132 all species →	ALPHA-/EPSILON-SARCOGLYCAN FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016012 all species →	Cellular Component	sarcoglycan complex	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12565	SGCA; alpha-sarcoglycan	-	Viral myocarditis	ko05416	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.