Gene detail

Detailed information of PFX34230.1 in Stylophora pistillata

Genomic Location: Spis.scaffold5:1096714...1104573
NR annotation: no NCBI-NR hit recorded
Species abbreviation SPIST · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

DAG1

ATGGAGTTTCTCCTTGTTGGATTTCTGCTGATTTCCGCGGCGCTCGTAAGCGAGCAAAGCAACGTTCAATCGACTGAAAAAATCGAAAGCGCGACAGCTGTTGTAGGGAGAGTTTTTGTTTATACTTTGCCAAACGAGGGTGATCATGAAGCCATATCTAAGGCAATCCAAAGAGTACAAGAGACTCTACCGCAATGGCTGTCTTTCAATGCGGAAAAATCTGCACTCCTTGGAATTCCCTCATGGCGTGACAGAGGCGGAATTTTGATCGATTTTCAATCGCAAGATGGAGTTGTTGTTCATTCATTGCAGATCGAGATCAAAGACTTGCGTGAGGGAACGTCACAGTCGGGGCCACACTCAAACAACAGCAAGGAATTTTCTTACTCGAAACCGAAATGCCCTAAGGGACTACCTGTCGCAGCGGCCTCGATTATATTAGACTATCACTTGGAAAAAACTACGGGGTTAACGAGGGTAGAGATTATGAACAAAGTGGGCGAGTTTGTCAACGTGGATGTTGGAAATCTGCACATGTTGGCGGGAAAAGGACACAACACGGCATTCGGGCTCAAGGATGTTATAACTGTCACAGCAGGCCCAGGAAATGTAGGAGATCCCAAACAGTCGGGTGTGGTTATCTCTTGGCAGATTGGATGCGGAATTGATATTCCTATTGCTGGAGTACGAATAGCCACCTTCCTCAAATCAAGCGCAGAGACTGGAGCCTTCGGTCCAGTACTTGGTCTCCCTGTGACTGAGTGGCACATATCCATTGGTTATCCTAAAGAACCTCGCCAAAGATCACGTAGGCAAGTCTCGCGTGACAGTTCTCCTAAAGTTGTTAAACGATCAACGAAAAGAAACGTCCGAGCGATTCAGCCAACTCCTACTCCAACTCTGACCGCTGCTCCTCCCACTTCGGTCGTCGCCAGTGTCACAGTAACTATTACAAGGACAAGTTCTGTTGTTCCGACTTCAACTGTAGTCCCGACTACCACTCCGGTAGCTCCGACAACCACCGAACAATCGACGACGACACAGCAGCCAACCACTACGCAGCCACCTACAACGACAGACGAACGGACCACAACCGAGAAACCGACGACCACTGAAAAGCCCACGCAGTCAATAATCACGACAGTAGAACCGACCACCCCCAAAGAGACGACTATTACCGAAAAACAGACAAGCACTGCAGAACTAGACACTACCAAACCAACGGCGGTAGAATTGACGACTACTAAAGAAACGACCACCACCGCAGAATCTACGACAACCGAGCGAACGACCACGAAGGAAAAACCTTCCACTACCGAAAAACCGACTCCCTTCGAGAAATCAACTACCCCAGAGCTTACCACCACAACACGAACGTCCACGAAAGAAACGCCGACTACTACCGGAAAATCGACTACTACGGAACAACCAACTACCCCGACAAAACCGACCACAACCGAGCGAGCCACGACGACCGAACAGCCGAGCTTTACAACCGGGACTACGACCACTACAGAAAAAGCGACAACAACAGAACAAACGACAACAACAGAACAAACGACAACAACAGAACAAACGACAACAACAGAACAAACGACAACAACAGGACAAACGACAACAACAGAACAAAGAACGAAAACATCAGCGCCAAGCACGACTACTCTATCGACCACTCAAAAATTATCAACCACAGGGCAACCAACAAGACCTCCTACCAAAGAGGTGTCACCAACCACCAACGATTTCCCATTCACGGTGAACGAGATTGGCGCTCTTTATCTTTATAGAGGCCAAGTGTTTCGGTTCCATATCCCTTGGGACACTTTTTATGATAATCAAGATTTTTTTACCCCAAACTTGACTCTTGAATTAAGGACGCACAATTTTAAGTTTCTGGAGCGTGAGTACCCTTGGATCAAATTTGATGCCAAAGAACAAGTGATTTATGCCTTTCCGATTGACCAAAAAACAATTGCCATTCACGAGTTTATGATGATCGCGCGAGATAAAAAGGGAGAAATGGGTTTTGATGCATTCCAGATTAACGTTCTGAATGATTCATCAGTCTCCTACAATCATCAGTTTACTCTAGAAGTCGACAATGATTACGACGAATTCTCCAAAGACTTTGACGACCAAATGGAGCTTGTTACAAAGCTTGCAAAGTATTTCAACGTGAACTCGAGTAGTATCAGAACCGCTTCATTCACTGCTGGATCTGTGGTGATGAAATTCCAGTTCGACTCATCAGTGGTTCCCTACGACGAGTGTGATTTTCCCGAGAGAGTAAAATTCCTTTCTGAGGATGGCGACGATGTTAATTCCGATCTTAAGAAGGCTCTTGAACCCAAGTTCCGAGTCAAATCAGGAAAGTTTGAAGGTCTCCGACCCTGCGGAGACGTGGTGGACGTGCTTCCAGCAACAAGTTCAGGTCAGTGGAAGACCTACGTGATCATCCCCGTGGTGATTCTTGCAGTGGTGCTCCTAGTGGTGGGAATATGTCTGTTCCTTGTTTTGCGGTCGCGTAAGAGACGAAAGCTATCTTTAGAAGATCAACAGCTCTTTGTGTACAAACGCAAACCGGCTGTGCTTCAGGAAGAGTATGAGGTGAAAGAAAGACTCCTCAAACAGCCCCTCGTTTTGCCGAACGAGAAGCCACCACTTGCTGCCCCAGTTCATCCAAGGAGCCCCTCCTTAAAGCACCAAAACGGCGATCCTCCCCAGTCCCCATCTTATCAGGCCCCGTCCTTTACGTCATTCAGACAGCCGAGTAACCAGGGAACTCCCAATGGAAACAGCCCACGGAAACCCGGGTATTCGGGATACCGGTTACCCCCGGCGTATGTACCCCCTTGA

Transcript

rna-Spis819_mrna

ATTGATAACAGCGAGTGAGCGCGGAACATGGGTTGGTCTCGCGTAACACTACACGGCTATTCAAGGAATTAATTCGATTCCTATTGTTTGTAAACTTTGGCAGGTTTCACGCCGAAGTTGACTCCAAGACCTGACGGGCGATCTGTAAGCAAGCAGTCTTTCTGTTAGTAGGAATCTGGGATAGATTAGGGTGCAAATATTATTCTTTAAGGTTCACCCCAGCGATGTTCTAGATTCTTATTGGCAAACTGCGAATCGATCAAAGAAACAGGCCGAGGAGGTATAAATATAGAATTATCGATCCAGTAGGTGACAGCAGCCCATCAGCAATGAGGCCTTGTGCTGTCCTAAAGGTAGTATCCCAAAGAGACATTGAAACAATATGGAGTTTCTCCTTGTTGGATTTCTGCTGATTTCCGCGGCGCTCGTAAGCGAGCAAAGCAACGTTCAATCGACTGAAAAAATCGAAAGCGCGACagctgttgtagggagagttTTTGTTTATACTTTGCCAAACGAGGGTGATCATGAAGCCATATCTAAGgCAATCCAAAGAGTACAAGAGACTCTACCGCAATGGCTGTCTTTCAATGCGGAAAAATCTGCACTCCTTGGAATTCCCTCATGGCGTGACAGAGGCGGAATTTTGATCGATTTTCAATCGCAAGATGGAGTTGTTGTTCATTCATTGCAGATCGAGATCAAAGACTTGCGTGAGGGAACGTCACAGTCGGGGCCACACTCAAACAACAGCAAGGAATTTTCTTACTCGAAACCGAAATGCCCTAAGGGACTACCTGTCGCAGCGGCCTCGATTATATTAGACTATCACTTGGAAAAAACTACGGGGTTAACGAGGGTAGAGATTATGAACAAAGTGGGCGAGTTTGTCAACGTGGATGTTGGAAATCTGCACATGTTGGCGGGAAAAGGACACAACACGGCATTCGGGCTCAAGGATGTTATAACTGTCACAGCAGGCCCAGGAAATGTAGGAGATCCCAAACAGTCGGGTGTGGTTATCTCTTGGCAGATTGGATGCGGAATTGATATTCCTATTGCTGGAGTACGAATAGCCACCTTCCTCAAATCAAGCGCAGAGACTGGAGCCTTCGGTCCAGTACTTGGTCTCCCTGTGACTGAGTGGCACATATCCATTGGTTATCCTAAAGAACCTCGCCAAAGATCACGTAGGCAAGTCTCGCGTGACAGTTCTCCTAAAGTTGTTAAACGATCAACGAAAAGAAACGTCCGAGCGATTCAGCCAACTCCTACTCCAACTCTGACCGCTGCTCCTCCCACTTCGGTCGTCGCCAGTGTCACAGTAACTATTACAAGGACAAGTTCTGTTGTTCCGACTTCAACTGTAGTCCCGACTACCACTCCGGTAGCTCCGACAACCACCGAACAATCGACGACGACACAGCAGCCAACCACTACGCAGCCACCTACAACGACAGACGAACGGACCACAACCGAGAAACCGACGACCACTGAAAAGCCCACGCAGTCAATAATCACGACAGTAGAACCGACCACCCCCAAAGAGACGACTATTACCGAAAAACAGACAAGCACTGCAGAACTAGACACTACCAAACCAACGGCGGTAGAATTGACGACTACTAAAGAAACGACCACCACCGCAGAATCTACGACAACCGAGCGAACGACCACGAAGGAAAAACCTTCCACTACCGAAAAACCGACTCCCTTCGAGAAATCAACTACCCCAGAGCTTACCACCACAACACGAACGTCCACGAAAGAAACGCCGACTACTACCGGAAAATCGACTACTACGGAACAACCAACTACCCCGACAAAACCGACCACAACCGAGCGAGCCACGACGACCGAACAGCCGAGCTTTACAACCGGGACTACGACCACTACAGAAAAAGCGACAACAACAGAACAAACGACAACAACAGAACAAACGACAACAACAGAACAAACGACAACAACAGAACAAACGACAACAACAGGACAAACGACAACAACAGAACAAAGAACGAAAACATCAGCGCCAAGCACGACTACTCTATCGACCACTCAAAAATTATCAACCACAGGGCAACCAACAAGACCTCCTACCAAAGAGGTGTCACCAACCACCAACGATTTCCCATTCACGGTGAACGAGATTGGCGCTCTTTATCTTTATAGAGGCCAAGTGTTTCGGTTCCATATCCCTTGGGACACTTTTTATGATAATCAAGATTTTTTTACCCCAAACTTGACTCTTGAATTAAGGACGCACAATTTTAAGTTTCTGGAGCGTGAGTACCCTTGGATCAAATTTGATGCCAAAGAACAAGTGATTTATGCCTTTCCGATTGACCAAAAAACAATTGCCATTCACGAGTTTATGATGATCGCGCGAGATAAAAAGGGAGAAATGGGTTTTGATGCATTCCAGATTAACGTTCTGAATGATTCATCAGTCTCCTACAATCATCAGTTTACTCTAGAAGTCGACAATGATTACGACGAATTCTCCAAAGACTTTGACGACCAAATGGAGCTTGTTACAAAGCTTGCAAAGTATTTCAACGTGAACTCGAGTAGTATCAGAACCGCTTCATTCACTGCTGGATCTGTGGTGATGAAATTCCAGTTCGACTCATCAGTGGTTCCCTACGACGAGTGTGATTTTCCCGAGAGAGTAAAATTCCTTTCTGAGGATGGCGACGATGTTAATTCCGATCTTAAGAAGGCTCTTGAACCCAAGTTCCGAGTCAAATCAGGAAAGTTTGAAGGTCTCCGACCCTGCGGAGACGTGGTGGACGTGCTTCCAGCAACAAGTTCAGGTCAGTGGAAGACCTACGTGATCATCCCCGTGGTGATTCTTGCAGTGGTGCTCCTAGTGGTGGGAATATGTCTGTTCCTTGTTTTGCGGTCGCGTAAGAGACGAAAGCTATCTTTAGAAGATCAACAGCTCTTTGTGTACAAACGCAAACCGGCTGTGCTTCAGGAAGAGTATGAGGTGAAAGAAAGACTCCTCAAACAGCCCCTCGTTTTGCCGAACGAGAAGCCACCACTTGCTGCCCCAGTTCATCCAAGGAGCCCCTCCTTAAAGCACCAAAACGGCGATCCTCCCCAGTCCCCATCTTATCAGGCCCCGTCCTTTACGTCATTCAGACAGCCGAGTAACCAGGGAACTCCCAATGGAAACAGCCCACGGAAACCCGGGTATTCGGGATACCGGTTACCCCCGGCGTATGTACCCCCTTGAGAACAGTTAACCACATAGGACCGCCAGTTACTATCATATCACCTGGAAAAAATGAAGAGAGAGGACGTTATATTCACCAAAACTTAAAACTGAATTATTGCTCGTGTTACCGTTATAGAAACTCGACGATTTCCATCTGAAAAATTGCAATCTGTTGGTATTTTCGGTAATCAAGCTTCCTCGCTCAAACGTGATATTCTAAGTTCTTTATGTGCCAACTGTGAAGCACTAAGGAGAGCGAACTTAGGCCTCTTATTATTAAATTCTCTTTGCGAATTTCTTCATCTCAGTTTGGTGCATAGTTGCGCCAGTGTTTTGTTCATTCCGACGTCTAATTAGGTCGTTTAAAATTCTCAAATTAACCGAGAACTAGATTGAAAATCAAGCTTCTTTGTTCATTAGGAGAATAAGTGATTAAATCCTTTCTAAGTCAGTcttgtttgaaaaataacatTACCTCACGAATTTCCAGAATCTGAAAATGTAGCAACACCCTTATTGTCGAGGATTTCCGTAGTAATTAAGCGGCTCTAAATAAGTAATTAAGCTATGAAAAAGGACTAAACCACAATTTATCTTTGCAAAAATGCGTTAAAAGGAAGAGAACATAGGAGCGGTGCAGAGAAAATATTCCAGCATTCCACATTGTTAAGGAATTATGCAGCTTAAAGATTTCGAATCTCGTAAATATCACACACGTTTCCGTCAATGTGgatgctgttttgtttattaccCGCTTATCAAAATGTATGTAAATCTATACCAAGGTTATAATCTTTATACCAGTCTAGCTAATTTTAAAAACGCATTAAGAGATTAAACTGATAATTTTAAGGCTGATATGTTGTGTTAGTAGTTGATCTTCAGCCAAAGGTAGAGATGAATGTACCGGCAAAGTTTGTTTTACTTGCCCCGCGTAGGAATTAAGCAGTTTAGATTAAACGAATCTCGGG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18424 all species →	a_DG1_N2	Alpha-Dystroglycan N-terminal domain 2	Domain	Interproscan
PF05454 all species →	DAG1	Dystroglycan (Dystrophin-associated glycoprotein 1)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR015919 all species →	Homologous_superfamily	Cadherin-like superfamily	Interproscan
IPR030398 all species →	Domain	DG-type SEA domain	Interproscan
IPR027468 all species →	Homologous_superfamily	Alpha-dystroglycan domain 2	Interproscan
IPR041631 all species →	Domain	Alpha-dystroglycan N-terminal domain 2	Interproscan
IPR008465 all species →	Domain	Dystroglycan, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21559 all species →	DYSTROGLYCAN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0002009 all species →	Biological Process	morphogenesis of an epithelium	Interproscan
GO:0007411 all species →	Biological Process	axon guidance	Interproscan
GO:0016011 all species →	Cellular Component	dystroglycan complex	Interproscan
GO:0016203 all species →	Biological Process	muscle attachment	Interproscan
GO:0021675 all species →	Biological Process	nerve development	Interproscan
GO:0042383 all species →	Cellular Component	sarcolemma	Interproscan
GO:0043236 all species →	Molecular Function	laminin binding	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016010 all species →	Cellular Component	dystrophin-associated glycoprotein complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06265	DAG1; dystroglycan 1	-	Viral myocarditis	ko05416	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.