Gene detail

Detailed information of PFX34250.1 in Stylophora pistillata

Genomic Location: Spis.scaffold5:723559...727086
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANK2

ATGTACGGATATTCTTCTCTGCATAACGCTGTGGTTACACAGGACCTCAAAGCCGTTCGCAGCCTAACAGGACCAACACGAACATGTGAACTCGAGTCAAGAGACTCCATGGGTTTCACTGCGCTTCATTTGGCCACTCTACAGGGAAATAAAGATCTGATCGAGATGCTGGTTTTGGCGGGATGTGACGTCAACAGTCGCACGAAAGAAGGGATGACTTCATTACACATCAGCAGTGAACAGACAAGAGCTGACGAAATCTTGCGCATCTTAGCATCGGCGTCTTGCAATGTCAACGAGCGCAACAAACTGGGAAGAACCGCTCTCCATCTTGCCGCTAAACTGGGAAACCTTCAAAATCTGAAAGCGCTAATTGACAATGGTTGTGACAGAAATATTAAGGACAAACTTGGTTTCACGGCCGTCGGTTTAGCTTTTAAGTTTAACCAGAAAGCAAGCGCAGACATTTTACTCCACTATAAATCTCGGCGGAAGCGGCGCTCTGGAGGCCTCGGAGAAACGACTTCTGAGGAGAGCCTTTATCAAGAAGACGCATCCGAAAGCTGTCAAATGTATAATGGAGAGGATAAGAAAATAGTCGAGGAAAGGAGTTCTATGTCTTCTAAAAAACTGGAGGATAAGACGTCGTTGAAGTTCATTCGCTGGAAGGAGAACAGAGAGGCATCTTTGAAAACTTTGCATTTAATCATGGCTCTGTTAACACATAAGAGAAACGTACTGGACGGTTTAACAAATTGTTATTCAAGTAAAAAGCGAGCATCTGTCGAAATTAATTTACCGGATTTAATTTTTACTTCTCTTTTCCAGTATCCCCTCGCAACGCACACCTCTTCAAAGCTAAATGACAAATCTAGAACACAATGCGTGTGTGATTTTTATCTAAAACCAAGAGAAATCGAAAGAAGTCGTATTATACTGGTCAAGTTGTTGCAGGGTGTAAAAGACTCTATATCATTTTCTCGAGATAAATCGTTGATGATTCCAAAGCAACACCAGAGCCTACCATCATCTTCGAAATGGAAATTGCAAGAGAAAGACTTGAAAGTCAAAGAAGAAAAGCTATCAACAGCACCACGAAGCAATACCAACGCGAACCCCTCCATATGGGAGCTGAATAGCATGCACGATAAGACAACGCTGACAACACTATGTGAAGACTCAACGTTGATGGAGCTTTGTGAAGAAAGTCCTCCAGAGGTGGACAATGAAGGTTTGAAGAAAAGCCTTGAAAAGCTGAACAAACTCATGATTTCCGTCAAGGATTCAGATAACACCAAAAATTATTTAGATTGCATAGACAGCGGTCTCATTACAGACGACATTGACATTTATCTTTCGCGTTTGGATGACGTCATTGCCATGAAAAGTACTCCTACGTCATTTATTGAGGCTACTTTAGAAATCTTTTCTCAGAATTTAGACATCTCTGTTTATTGCGCAAAGAAAAGAGATTTACTTTTTAGCTCGCTTTTAGAGAAAATCATTACTGGTGGGGGCTCGTGGGACGCAGATAAAATAGCAAAGATTTTCCTTCATGTCTGCGTTGCCTTTGTGAGCGACCAGCGGTTGTTATTCAGTTGCGCAGGTGCCGTGTTAAAGCTCGGACTTTGCCATTCACAATCCAACGCGGTCGCCCTGGGGACTTGTATTTTAGTGAGAATGGGTCTTCTCAAACAAGAGGACTACGTAGATATTGTTAAGGACTTAACGGGGCCTCTCTTAGCCTTGGAACACTTATGTGCTGAAGAATATTTCCCGAGAAATCTCGCCGCCATCTTTGCTTCTTTTCTATCCAAGTCAAGCCCAAGGCTGTTCGGAATGGATCATCTACGCCTCCGAGCACTGGCGTCAGCGATTACCAAAGAGGTACTTTCCATTTCATGTAAAGAAGCCGAGAGCGACATGGGAAAAAATTTCAAACGGGTTTGTGACATCGTTGCGCTCGAAGGATACAGAGAGGAGCTGTTGTCGTGTGTGGATGCGTTGTTTTCGAGGGCTTTTGTGACGCTGGGATGTAACGCATGGCGGATAGGCGAAAGCATTCTTATTTACCTTGGTTTATTGAAAGGTGAACTTCACGTTGAAACTGTGAGGAATCATAGCTCTGCTTTAAAACTTCTGCTCCATGTACTGAAGCAAAGCTACTGTCCACCAATCCTAAAACAGTTACTAGTGTGTTTCCTGCAAAAACCTAATCCATTACTTACATCCTATTCCTCTGAAGTTGAGGATATTTTTCGCATCATACAGTAA

Transcript

rna-Spis789_mrna

ACATGTACGGATATTCTTCTCTGCATAACGCTGTGGTTACACAGGACCTCAAAGCCGTTCGCAGCCTAACAGGACCAACACGAACATGTGAACTCGAGTCAAGAGACTCCATGGGTTTCACTGCGCTTCATTTGGCCACTCTACAGGGAAATAAAGATCTGATCGAGATGCTGGTTTTGGCGGGATGTGACGTCAACAGTCGCACGAAAGAAGGGATGACTTCATTACACATCAGCAGTGAACAGACAAGAGCTGACGAAATCTTGCGCATCTTAGCATCGGCGTCTTGCAATGTCAACGAGCGCAACAAACTGGGAAGAACCGCTCTCCATCTTGCCGCTAAACTGGGAAACCTTCAAAATCTGAAAGCGCTAATTGACAATGGTTGTGACAGAAATATTAAGGACAAACTTGGTTTCACGGCCGTCGGTTTAGCTTTTAAGTTTAACCAGAAAGCAAGCGCAGACATTTTACTCCACTATAAATCTCGGCGGAAGCGGCGCTCTGGAGGCCTCGGAGAAACGACTTCTGAGGAGAGCCTTTATCAAGAAGACGCATCCGAAAGCTGTCAAATGTATAATGGAGAGGATAAGAAAATAGTCGAGGAAAGGAGTTCTATGTCTTCTAAAAAACTGGAGGATAAGACGTCGTTGAAGTTCATTCGCTGGAAGGAGAACAGAGAGGCATCTTTGAAAACTTTGCATTTAATCATGGCTCTGTTAACACATAAGAGAAACGTACTGGACGGTTTAACAAATTGTTATTCAAGTAAAAAGCGAGCATCTGTCGAAATTAATTTACCGGATTTaatttttacttctcttttCCAGTATCCCCTCGCAACGCACACCTCTTCAAAGCTAAATGACAAATCTAGAACACAATGCGTGTGTGATTTTTATCTAAAACCAAGAGAAATCGAAAGAAGTCGTATTATACTGGTCAAGTTGTTGCAGGGTGTAAAAGACTCTATATCATTTTCTCGAGATAAATCGTTGATGATTCCAAAGCAACACCAGAGCCTACCATCATCTTCGAAATGGAAATTGCAAGAGAAAGACTTGAAAGTCAAAGAAGAAAAGCTATCAACAGCACCACGAAGCAATACCAACGCGAACCCCTCCATATGGGAGCTGAATAGCATGCACGATAAGACAACGCTGACAACACTATGTGAAGACTCAACGTTGATGGAGCTTTGTGAAGAAAGTCCTCCAGAGGTGGACAATGAAGGTTTGAAGAAAAGCCTTGAAAAGCTGAACAAACTCATGATTTCCGTCAAGGATTCAGATAACACCAAAAATTATTTAGATTGCATAGACAGCGGTCTCATTACAGACGACATTGACATTTATCTTTCGCGTTTGGATGACGTCATTGCCATGAAAAGTACTCCTACGTCATTTATTGAGGCTACTTTAGAAATCTTTTCTCAGAATTTAGACATCTCTGTTTATTGCGCAAAGAAAAGAGATTTACTTTTTAGCTCGCTTTTAGAGAAAATCATTACTGGTGGGGGCTCGTGGGACGCAGATAAAATAGCAAAGATTTTCCTTCATGTCTGCGTTGCCTTTGTGAGCGACCAGCGGTTGTTATTCAGTTGCGCAGGTGCCGTGTTAAAGCTCGGACTTTGCCATTCACAATCCAACGCGGTCGCCCTGGGGACTTGTATTTTAGTGAGAATGGGTCTTCTCAAACAAGAGGACTACGTAGATATTGTTAAGGACTTAACGGGGCCTCTCTTAGCCTTGGAACACTTATGTGCTGAAGAATATTTCCCGAGAAATCTCGCCGCCATCTTTGCTTCTTTTCTATCCAAGTCAAGCCCAAGGCTGTTCGGAATGGATCATCTACGCCTCCGAGCACTGGCGTCAGCGATTACCAAAGAGGTACTTTCCATTTCATGTAAAGAAGCCGAGAGCGacatgggaaaaaatttcaaacggGTTTGTGACATCGTTGCGCTCGAAGGATACAGAGAGGAGCTGTTGTCGTGTGTGGATGCGTTGTTTTCGAGGGCTTTTGTGACGCTGGGATGTAACGCATGGCGGATAGGCGAAAGCATTCTTATTTACCTTGGTTTATTGAAAGGTGAACTTCACGTTGAAACTGTGAGGAATCATAGCTCTGCTTTAAAACTTCTGCTCCATGTACTGAAGCAAAGCTACTGTCCACCAATCCTAAAACAGTTACTAGTGTGTTTCCTGCAAAAACCTAATCCATTACTTACATCCTATTCCTCTGAAGTTGAGGATATTTTTCGCATCATACAGTAACTATGGACTAGTAATACTGTAAAATCGAGTTTGAATTGTAAATTCTTCAATTTAAGATTGTCGTCGTGCCAAAACTTTCTTCCTCTAatattctgtttttcttttatacgCCCGAGTCTCACCTATTCTAGGCATTAGATTTGTGAACGAAGAGCGACAGAGGCACAAAGCGATGattctattttcatttaatataCTTTTGAGGGTGTATATTTTTTGTGACAACGCAATTGTAAGtaaaatgtttgtttcatttctagCTCTTGCATAGCTTGTATTTATATCGTTACCATAAAGTCAATCACTGCTTCAGTCTTACTTCTTTCCTTGAGACTATGCCTAGACCGATAATGTATTTCTAAgagcatttttcaaaatgtgtatttatacaatatgaaaataaaatattatttatacGG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07834 all species →	RanGAP1_C	RanGAP1 C-terminal domain	Domain	Interproscan
PF00023 all species →	Ank	Ankyrin repeat	Repeat	Interproscan
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR009109 all species →	Domain	Ran-GTPase activating protein 1, C-terminal	Interproscan
IPR036720 all species →	Homologous_superfamily	Ran-GTPase activating protein 1, C-terminal domain superfamily	Interproscan
IPR050776 all species →	Family	Ankyrin Repeat and Cyclin-Dependent Kinase Inhibitor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24201 all species →	ANK_REP_REGION DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22499	ARMC5; armadillo repeat-containing protein 5	-	Cushing syndrome	ko04934	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.