Gene detail

Detailed information of PFX34390.1 in Stylophora pistillata

Genomic Location: Spis.scaffold4:658458...689145
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

IQGAP1

ATGGCAACACCAGAAATTGGTGTGGAATACGAAGATGGGAGGTGGAATGACTCGAGTGGGGCCTACGCTGGCGATGAGACCAGTCCTGAGAGAGCTTCAGGCTCGGAAATGGACGAACAGCGCAAGCAACAGATGGCCTATCAATATCTGTGTCACTTGGAAGAGGCGAAATTATGGATGGAGGCTTGTCTGAAGGAGGAATTGCCGCCTACAACTGAACTGGAGGAGGCTTTCAGGAATGGTGTGTTTTTAGCAAAACTGGGAAATTTCTTCACTCCTGAGACGGTACCCCTGCGCAAAATATTTGATAAAGAATTCAAAGTGTTGAATACTCGGGGACTTCACTTTCGTCACACAGATAATATTAATTACTTCATGAACAGCTGCGGTAAAGTTGGTCTACCGAAGGTCTTCTTCCCTGAGACAACGGATATTTATGACAGAAAGAACATGCCAAAGCTAATATATTGTATCCATGCATTGAGTTTGTACCTGTTCAAGTTAGGATTAGCACCACAAATACAAGATTTATATGGCAAGGCCAAATTTACTGAGGAACAGATCAGTGCCATGAGGAAGGAGCTAGAAAAATACGGAATTCAAATGCCAGCCTTTAGCAAGATAGGTGGAATTTTAGAGAGTGAGATGCCTGTGGATGAAGCAGCATTGCATGCTGCAGTGATTGCCATCAATGATGCAATAGACCACCAAGATGCAAATGGCACTCTTGAGGCTCTCCGCAATCCTAGTGCACACTTAGTTGACATCAGTGCAGATAATGCAGAAGGGTACCAGGAGGCCCTTTACCAAGCTAAGTCTAGTAAGGCTGCCCAAGCTCTAGCAAAGTCACCAAGTAGTGAGGGAATGGATGTATATGACACACTCCTAACCCAGGCTGAAATTCAAGGAAACATTAGTCAGGTTAATGATGTGATCAGAAGAAAGAAGGCAGAGGAAGCATTGATTCAGGCTGTCAGAGAAGTTAACCAAGCTGTCAACAATAATGATGAAGAGGCTTTGATAATTGCTTTATCCAACAAAGCAGCTAAGTTGACAGGTTTGACCAAAGAAAATGGGTCATGGTACATGAAGTTGTTAAAGGAGAAAAGAAATCTAAAACAAAAGCAAACTGGTCTCACTGATGTTGATCTCACCCAAACAGAAATCCAGGAAGCAGTCAATGCAGCTAATGAACTAGCTGAACAGCACAGACAAATGGAGGATATTGTACACTGTATAAACAAGTCATTAGATATGGGTACAGTAGAAGAAACTCACACCCTGATACAAAAACCTGAAGGGATGTTTCCAAAAGTTCTGACAAGGAGTGCCTTTCTGTATCATGATGGACTTCTTAAAGCTAAGCAACAAGCAATGCAAGAAAGTGATGAAACTTGTCTTTCACATCAGGCTGTATGTGATCAGTTGTCAGTTTTGACAGCTGTAGCAGCCATAAATGAAGCCATTGAGAATGAAAATTCCACGCAGTTAATTGAAAAAATGAACCATGCTAATGCTGGTTTGACATCAGTAGATGAGAGTCTTTGTAACAGATACTTAAGTCACTTGATCTCTGTCAAGGAGGAGAAAGCACAGGACTGTGGAGTCGGCAAGGACGATCTAACAAAGCTCGAAATCCAGATTTGTGTGGACTATATGAACACTGTTGTTCAAGAAGAGCATGACCTGATATCTGCCATAGCAGTCATCAATGAGGCAATTGATAAGGAAGATCACCAAAGTACTCTACAGGCCTTGCAGGCTGATGCTGCCAAACTTTCAGGTATTGACCCTGACAACAGCCAACTGTATCAGAAGCTTCTCCACTCCCAGAAGATGGCTAAAGCAGCGAAAGCTGATGAAGACACAGCTGAACTGTGGCATGATGAGATCCAGAGAAGCTTGGACAGTGCCAATCGTTACTCTGATGAGGCTCAACATTGCAGTGACTCTGCATGGCTGGAGCAGAAGACATCTCAGGGTCATTTGTATTACTACAATACTGAGAATAGTGAAAGTTGTTGGGAGAAACCTGTTGACATGATCACTAACTCTGCTGTGCTAACCAGAGAGGAAATTCAGGGTGTGATATCACGAGTGACAATCCAATATGACCGTTGGGTCCACATGGAGTCAAATGAACCCTTGATTATCAAGCTGCAATCGAACTGGAAAGGATACCTGGCCAGAAAGGCTTACAAAGAAAGGCAGACATTCATAAAGGAACATCTACCAGCAATCATTAAAATACAGGCATTTGTAAGGGGATTTATTCAAAAATTGAAATACAAAAGGAGGCTCAATGAACTGCACAGTCATCCTGAGGAAGTTGTAAAGATTCAATCTTGGGTGAGTATGTCACTTGCCAGAAAGAAATATCAAGAAAGAAGAAAATACTTCAAGGACCATAATTCTGCCATAGTGAAAATCCAGGCTTGGTTGAGAGCTAATGTGGCCCAAAATGACTACAGAAAACTCATCTCCATGCAAGATCCGCCAGTTAAGACTGTAAGAAAATTCCTTCATCTTTTGGAAAACAGCGATGCCGACTTTGAAGAGGAGCTAAATCTTCAGAAGCTAAGGGCCCAAGTTGTGACAGAGATCAGATCAAACCAACAGCTTGAAAATGACTTAGGTCTAATGGACATCAAGATAGGACTTCTTGTTAGAAACAGAATCACTTTGCAGGACGTAATACACTATGGAAAGAACTTAAAACGGGAAAAACAAGACATGAGTACCGCGATGCAGAGAACAAAGGGTATCAAGTCACTGAGTAAAGAAAGCCATGAAAAACTAGAAGCTTACCAGAACTTGTTTTACTTGCTTCAGACTAATCCAGTTTACCTGGCCAAGCTGATTTTTGCAATGCCGCAGAGTAGATTTACTAAATTCATGGAGTCTGTGACATTGACATTATACAACTATGCCTCTAATCCGAGAGAGGAGTACCTGCTTGTGAAATTATTTGACACAGCGCTTAAAGAGGAGATCGCCTCAAAAGTTGATCAAATGCAGGACATCGTAACAGGAAACCCAGCGGTCATTAGGATGTTGGTTCATTTTAACCGAGGTACGAGAGGTCAAAGTTCACTGCGAGAGCTGCTACAGCCATTGGTTGAGGGTGTCCTAAATGACAAGAACTTGTCAATCAACACAAACCCACTTGAAGTGTACAAGGCTTGGATTAATCAAATGGAATCAGAAACGGGAACTGCAAGTAAGCTCCCATATGATGTGGAACCGGAACAAGCGCTGAAACATCCTGAAGTACGAGAAAGAATAGAGGCTGCCATGAAGAGCCTCACAGTAGTTACGGATACATTTTTAAACTCCATTGTACAATCTGGCGATAAAATACCGTATGGTATGCGATATGTAGCAATGTCTTTGAGAGTAGCTCTCGCTGAAAAATTTCCAGACGCACCAGAATCAGAGATATTAAAAGTTGTTGGTAACTTGATTTACTACAGATATATGAACCCTGAAATCGTAGCCCCAGATGCTTTTGATATCGTATCAGTGGGCGTGGACAAATGTTTGACGGCTGATCAGAGAAGAAATCTTGGTTCTATTGCAAAGATTCTACAGTATGCAGCATCAAATAAAATGAGTGTGGTCACCGAGTGGCCGCTAAGACTACCTTTACCTAACCGAAACATGGTTGCCACAGGTGAAACTTCACCTGAAGACGGAGAACAAGAGACGTCACATCATTCAAAGACGGAGATTTCCTTAACGCTGACCAATAAGTTTGAGGTCCCTGATGATGATGACTCTGACATGAGAGCGCTGTTTGTTAGAACCAAGAGAATGATCGTAGATGTTCTGAAAATCCAAGCTGGAGATAACTTGACCGAGATTCTAGAGACTCCCGCCTCTGATGAGCAAGAAGAGGAGCACACGAGATCGATGAAACTTCGAGAATTGAACGAGGAGAACAAAAGCAAGTCCCATGGCAATATGGCCAAGTCTACCTCAGCTTATGGAGATAACAAACTTCCACTTGAAGGACTGAAAAGGAAAATAATAAGAAATCTACGGATGCTTGAGAGTCAAGGAGTCGTCACCATCAAGAATGATTATCAAGATATCATAAACGCCATCGCCAAGGACATCAGAAACCAGAGGCGATACCGTCAAAGACGGAGACAAGAAAAAAAGAAACTGGGACAGACTTTGGAAAGCTTGCATAACAAATCACAGTTTTACGAAGAACAGATCGATTATTACAACCAGTACATCAGAGTGTGTTTAGATAACCTGTCCAAAAAGGGAAAGAAACCACGAGCCAAGCAGCAGAAGGGAAAGGAAGACGTGTACCGAGGTGAAATCAAGTACACTGCACAGAGATTGTATGAGAAGGGAGTTATTTTGGAGATTGAGGGACTGCCGCCGTCACAGTTCAAGAATGTCATGTTTGACATTAAATCAGCGGATGAAGTTGGAGTGTTTGAAGTGTCAGCCAAATTCATGGGAGTAGCCATGGAGAAAGTTGAGCTTGTCTTTCAGGACTTACTTCAACTTCAGTACGAGGGTGTAGCAGTAATGAAGATGTTCGGACGAGCAAAAATAAACGTCAACCTACTCATCTTCCTGTTGAACAAGAAATTTTACGGCAAATAG

Transcript

rna-Spis624_mrna

ATGGCAACACCAGAAATTGGTGTGGAATACGAAGATGGGAGGTGGAATGACTCGAGTGGGGCCTACGCTGGCGATGAGACCAGTCCTGAGAGAGCTTCAGGCTCGGAAATGGACGAACAGCGCAAGCAACAGATGGCCTATCAATATCTGTGTCACTTGGAAGAGGCGAAATTATGGATGGAGGCTTGTCTGAAGGAGGAATTGCCGCCTACAACTGAACTGGAGGAGGCTTTCAGGAATGGTGTGTTTTTAGCAAAACTGGGAAATTTCTTCACTCCTGAGACGGTACCCCTGcgcaaaatatttgataaagaaTTCAAAGTGTTGAATACTCGGGGACTTCACTTTCGTCACACAGATAATATTAATTACTTCATGAACAGCTGCGGTAAAGTTGGTCTACCGAAGGTCTTCTTCCCTGAGACAACGGATATTTATGACAGAAAGAACATGCCAAAGCTAATATATTGTATCCATGCATTGAGTTTGTACCTGTTCAAGTTAGGATTAGCACCACAAATACAAGATTTATATGGCAAGGCCAAATTTACTGAGGAACAGATCAGTGCCATGAGGAAGGAGCTAGAAAAATACGGAATTCAAATGCCAGCCTTTAGCAAGATAGGTGGAATTTTAGAGAGTGAGatGCCTGTGGATGAAGCAGCATTGCATGCTGCAGTGATTGCCATCAATGATGCAATAGACCACCAAGATGCAAATGGCACTCTTGAGGCTCTCCGCAATCCTAGTGCACACTTAGTTGACATCAGTGCAGATAATGCAGAAGGGTACCAGGAGGCCCTTTACCAAGCTAAGTCTAGTAAGGCTGCCCAAGCTCTAGCAAAGTCACCAAGTAGTGAGGGAATGGATGTATATGACACACTCCTAACCCAGGCTGAAATTCAAGGAAACATTAGTCAGGTTAATGATGTGATCAGAAGAAAGAAGGCAGAGGAAGCATTGATTCAGGCTGTCAGAGAAGTTAACCAAGCTGTCAACAATAATGATGAAGAGGCTTTGATAATTGCTTTATCCAACAAAGCAGCTAAGTTGACAGGTTTGACCAAAGAAAATGGGTCATGGTACATGAAGTTGTTAAAGGAGAAAAGAAATCTAAAACAAAAGCAAACTGGTCTCACTGATGTTGATCTCACCCAAACAGAAATCCAGGAAGCAGTCAATGCAGCTAATGAACTAGCTGAACAGCACAGACAAAtGGAGGATATTGTACACTGTATAAACAAGTCATTAGATATGGGTACAGTAGAAGAAACTCACACCCTGATACAAAAACCTGAAGGGATGTTTCCAAAAGTTCTGACAAGGAGTGCCTTTCTGTATCATGATGGACTTCTTAAAGCTAAGCAACAAGCAATGCAAGAAAGTGATGAAACTTGTCTTTCACATCAGGCTGTATGTGATCAGTTGTCAGTTTTGACAGCTGTAGCAGCCATAAATGAAGCCATTGAGAATGAAAATTCCACGcagttaattgaaaaaatgaacCATGCTAATGCTGGTTTGACATCAGTAGATGAGAGTCTTTGTAACAGATACTTAAGTCACTTGATCTCTGTCAAGGAGGAGAAAGCACAGGACTGTGGAGTCGGCAAGGACGATCTAACAAAGCTCGAAATCCAGATTTGTGTGGACTATATGAACACTGTTGTTCAAGAAGAGCATGACCTGATATCTGCCATAGCAGTCATCAATGAGGCAATTGATAAGGAAGATCACCAAAGTACTCTACAGGCCTTGCAGGCTGATGCTGCCAAACTTTCAGGTATTGACCCTGACAACAGCCAACTGTATCAGAAGCTTCTCCACTCCCAGAAGATGGCTAAAGCAGCGAAAGCTGATGAAGACACAGCTGAACTGTGGCATGATGAGATCCAGAGAAGCTTGGACAGTGCCAATCGTTACTCTGATGAGGCTCAACATTGCAGTGACTCTGCATGGCTGGAGCAGAAGACATCTCAGGGTCATTTGTATTACTACAATACTGAGAATAGTGAAAGTTGTTGGGAGAAACCTGTTGACATGATCACTAACTCTGCTGTGCTAACCAGAGAGGAAATTCAGGGTGTGATATCACGAGTGACAATCCAATATGACCGTTGGGTCCACATGGAGTCAAATGAACCCTTGATTATCAAGCTGCAATCGAACTGGAAAGGATACCTGGCCAGAAAGGCTTACAAAGAAAGGCAGACATTCATAAAGGAACATCTACCAGCAATCATTAAAATACAGgcaTTTGTAAGGggatttattcaaaaattgaaatacaaaagGAGGCTCAATGAACTGCACAGTCATCCTGAGGAAGTTGTAAAGATTCAATCTTGGGTGAGTATGTCACTTGCCAGAAAGAAATatcaagaaagaagaaaatactTCAAGGACCATAATTCTGCCATAGTGAAAATCCAGGCTTGGTTGAGAGCTAATGTGGCCCAAAATGACTACAGAAAACTCATCTCCATGCAAGATCCGCCAGTTAAGACTGTAAGAAAATTCCTTCATCTTTTGGAAAACAGCGATGCCGACTTTGAAGAGGAGCTAAATCTTCAGAAGCTAAGGGCCCAAGTTGTGACAGAGATCAGATCAAACCAacagcttgaaaatgacttaGGTCTAATGGACATCAAGATAGGACTTCTTGTTAGAAACAGAATCACTTTGCAGgacGTAATACACTATGGAAAGAActtaaaacgggaaaaacaAGACATGAGTACCGCGATGCAGAGAACAAAGGGTATCAAGTCACTGAGTAAAGAAAGCCATGAAAAACTAGAAGCTTACCAGAACTTGTTTTACTTGCTTCAGACTAATCCAGTTTACCTGGCCAAGCTGATTTTTGCAATGCCGCAGAGTAGATTTACTAAATTCATGGAGTCTGTGACATTGACATTATACAACTATGCCTCTAATCCGAGAGAGGAGTACCTGCTTGTGAAATTATTTGACACAGCGCTTAAAGAGGAGATCGCCTCAAAAGTTGATCAAATGCAGGACATCGTAACAGGAAACCCAGCGGTCATTAGGATGTTGGTTCATTTTAACCGAGGTACGAGAGGTCAAAGTTCACTGCGAGAGCTGCTACAGCCATTGGTTGAGGGTGTCCTAAATGACAAGAACTTGTCAATCAACACAAACCCACTTGAAGTGTACAAGGCTTGGATTAATCAAATGGAATCAGAAACGGGAACTGCAAGTAAGCTCCCATATGATGTGGAACCGGAACAAGCGCTGAAACATCCTGAAGTACGAGAAAGAATAGAGGCTGCCATGAAGAGCCTCACAGTAGTTACGGATACATTTTTAAACTCCATTGTACAATCTGGCGATAAAATACCGTATGGTATGCGATATGTAGCAATGTCTTTGAGAGTAGCTCTCGCTGAAAAATTTCCAGACGCACCAGAATCAGAGATATTAAAAGTTGTTGGTAACTTGATTTACTACAGATATATGAACCCTGAAATCGTAGCCCCAGATGCTTTTGATATCGTATCAGTGGGCGTGGACAAATGTTTGACGGCTGATCAGAGAAGAAATCTTGGTTCTATTGcaaagattctacagtatgcAGCATCAAATAAAATGAGTGTGGTCACCGAGTGGCCGCTAAGACTACCTTTACCTAACCGAAACATGGTTGCCACAGGTGAAACTTCACCTGAAGACGGAGAACAAGAGACGTCACATCATTCAAAGACGGAGATTTCCTTAACGCTGACCAATAAGTTTGAGGTCCCTGATGATGATGACTCTGACATGAGAGCGCTGTTTGTTAGAACCAAGAGAATGATCGTAGATGTTCTGAAAATCCAAGCTGGAGATAACTTGACCGAGATTCTAGAGACTCCCGCCTCTGATGAGCAAGAAGAGGAGCACACGAGATCGATGAAACTTCGAGAATTGAACGAGGAGAACAAAAGCAAGTCCCATGGCAATATGGCCAAGTCTACCTCAGCTTATGGAGATAACAAACTTCCACTTGAAggactgaaaaggaaaataataagaaaTCTACGGATGCTTGAGAGTCAAGGAGTCGTCACCATCAAGAATGATTATCAAGATATCATAAACGCCATCGCCAAGGACATCAGAAACCAGAGGCGATACCGTCAAAGACggagacaagaaaaaaagaaactgggACAGACTTTGGAAAGCTTGCATAACAAATCACAGTTTTACGAAGAACAGATCGATTATTACAACCAGTACATCAGAGTGTGTTTAGATAACCTGTCCAAAAAGGGAAAGAAACCACGAGCCAAGCAGCAGAAGGGAAAGGAAGACGTGTACCGAGGTGAAATCAAGTACACTGCACAGAGATTGTATGAGAAGGGAGTTATTTTGGAGATTGAGGGACTGCCGCCGTCACAGTTCAAGAATGTCATGTTTGACATTAAATCAGCGGATGAAGTTGGAGTGTTTGAAGTGTCAGCCAAATTCATGGGAGTAGCCATGGAGAAAGTTGAGCTTGTCTTTCAGgacTTACTTCAACTTCAGTACGAGGGTGTAGCAGTAATGAAGATGTTCGGACGAGCAAAAATAAACGTCAACCTACTCATCTTCCTGTTGAACAAGAAATTTTACGGCAAATAG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00307 all species →	CH	Calponin homology (CH) domain	Domain	Interproscan
PF00397 all species →	WW	WW domain	Domain	Interproscan
PF03836 all species →	RasGAP_C	RasGAP C-terminus	Family	Interproscan
PF00616 all species →	RasGAP	GTPase-activator protein for Ras-like GTPase	Family	Interproscan
PF00612 all species →	IQ	IQ calmodulin-binding motif	Motif	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036020 all species →	Homologous_superfamily	WW domain superfamily	Interproscan
IPR036872 all species →	Homologous_superfamily	CH domain superfamily	Interproscan
IPR008936 all species →	Homologous_superfamily	Rho GTPase activation protein	Interproscan
IPR001202 all species →	Domain	WW domain	Interproscan
IPR000048 all species →	Binding_site	IQ motif, EF-hand binding site	Interproscan
IPR001715 all species →	Domain	Calponin homology domain	Interproscan
IPR000593 all species →	Domain	RasGAP protein, C-terminal	Interproscan
IPR001936 all species →	Domain	Ras GTPase-activating domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14149 all species →	RAS GTPASE-ACTIVATING PROTEIN WITH IQ MOTIF	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0005516 all species →	Molecular Function	calmodulin binding	Interproscan
GO:0005938 all species →	Cellular Component	cell cortex	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan
GO:1903479 all species →	Biological Process	mitotic actomyosin contractile ring assembly actin filament organization	Interproscan
GO:0043087 all species →	Biological Process	regulation of GTPase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for PFX34390.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.