Gene detail

Detailed information of PFX34426.1 in Stylophora pistillata

Genomic Location: Spis.scaffold4:591841...595852
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-Spis616_mrna

ATGTCTGAAGTGACAGTCCTTGATTATGGAGCTGGAAATATTCAAAGTCTCATCAATGCTCTAAAACGTCTTGGTTACAATGTAAAATTTGTGAAGGATCCCAAGGATATCCTAAATGCAAAAAGGCTGATCTTCCCAGGTGTTGGAGCCTTTGGAAGTGCAATGGCTCTCCTTGAAAGCAGGGGTTATGTGGAACCACTTAAGATGTATGTCCAACAAGACAAGCCATATTTAGGAATTTGTCTAGGCCTTCAGACATTGTGTGATGGCAGTGAAGAGTCTCCAGGTACAAAAGGCTTATCTGTGATACCTGCTACTGTAATGCAATTCAATAAGGCTAAAGGTCTTGCTGTTCCACATATGGGCTGGAATGGACTGAAGCTTCATAAGGCATCAGCCCTGTTCCAAACTGGTTTCTCCAAGGAAGAAAAAGTCTACTTTGTCCACTCATATGCTTTATATTCACAAAGCAAGGAGATTGATGATTGGGTTCTTGCTACCACTGATTATGGAGAGGAGTTTGTCAGCATTGTGCAAAAGGGAAATATTGTTGCTACACAGTTCCACCCAGAGAAAAGTGGAGAAATAGGAATTAgtataatcaagagcttcttggaAAGTTTCCCAATCAGTGCAAAGCCTGCAAGGGTTCCTTACCAACTGCCCAATGCCAGTGAGCCAACACAACTTGGTCATCGCATCATTGCTTGTCTTGATGTCCGCAGTAATGATCAAGGTGACCTTGTAGTCACCAAAGGTGAACAATATGATGTGCGTGAACAATCTATTACAGAGAATATTCATTCTGTCACACAAAGTAAGGGTGCTGTGAGAAACCTTGGGAAACCTGTAGAGTTGGCACGTAGGTATTTCAAGGAAGGAGCAGATGAAATAGTATTTTTGAATATTACAAGCTTCAAAAACTGCCCTCTCCATGATATTCCAATGCTAGAGGTACTTAGGCAAGcatctcaaaatatttttgtcccGCTCACCATTGGGGGTGGTATTCGTGAGATACATGCCCCAAGCAAAGCTGGTGACCAAACTAAGATGAAGTGTTACTCTGCTGTGGAAGTGGCAGCTGAATACTTCAGATCTGGAGCAGACAAGGTGTCCATCGGCAGTGATGCAGTGTATGCAGCTGAGAACTACATATCATCTGGTGGGATAGCAACTGGTCAAACCTCTATTGAAACAATAGCAGCTGCATATGGAAGTCAGGCAGTAGTTATCTCAGTTGACCCTAAGCGAGTTTTTGTTCCATCCCCGAAAGCTGTGCAACATCATGTGATTCATACAAACTACCCTGGTCCATCAGGAGAAGAATTCTGTTGGTACCAGTGCACAGTGAAAGGAGGGCGAGAGTTGCGAGGTATTGGAGTGTATGAAATGGTGCAGGCTTGTGAAGCCCTTGGTGCAGGAGAAATTATGCTTAACAGTATTGACAGGGATGGaaCTAATAGTGGTTATGATCTTGAACTGGTTACCATGGTTAAAGAAGCTGTTGGTATTCCAGTGATTGCTTCCAGTGGTGCTGGTAATGTTGATCACTTCTCTGACGTGTTCCAAGGTGCACATGCTGATGCAGCACTAGCAGCAGGAATATTTCACCGAAACACTGTTACAATCAGGGCTGTTAAAGAGCATTTGTTGAGTGAAGGGATCCCTGTCAGAGTCAACACagactgctaaaaaaaaattaccttaaatTTACATTCAGACACCATCTGTGATAAAGTATCataaatttttctaaataatAATCAGTCTCAGTTGAGGCTAGAAATAAGAACTCCCTGAAAAGACCTGTCTGCTGACATTTAAAGGATAGTTATAGTCAGGGCGAAGGGTTGAAAAATGTTCActtttaacccttgaactcccagaaATGTTTAAGATGTAACTTATCAGTACAATATCCTTACATTACCCAACaaaaaggtcatgagaaaacTCACACTTAATAGGTAGAAGTTGCGATCTTGATCTATCACCAAATTTTCATAACATACGtgtaaggaaatgtgtagcatcTAGAGGGCAGAATAAAAATcacatcttgggagttcaagggttaaaatAGTTTGGTTCTTGCTGACAAAAACAGCCATCTCACATTGAGCTTCCTATTTCATCATTGGAAAAGCAACCAAGATCGTAAGCCGCCTCTAAACTTCAATTCAtgtgtgtttttctgtttttcaaagaACATGCTTTTAATTACTAAGGTTACAAACCTTCAGACATCCATTGGTGGCCCATGCAAgttgtaattaaaaataattttcttaagcTACTGAGGATAAAGGTTATATAAAATGAAGAAGGTAGTAATATTCCTTCctaaatttatttaaaggaTAGTTTGAGGAATTGTAAAATTGATACATGCATGAATGTCACATTATTCAACTGGGAAAGAAAGGGATGACAGAGAgtctttttctcaatttttggTAAAACATGTTTGTTGACAGGGTAATTTTTACTTAATACCCCCATCTGAATTGTAAAAGTATTCTCATTGCTGAAGGACGACATTTAATGTCCATTGAGCATTGTAGCCTTAGATGTTGAGAATTAAGTGTCTGATCACTTTCCTCTGGCAGTCTGCTTTTGGAATATTACCGTGGGGTTTTTAATTAGCCTTTCACCCAATGAATATATCATTTGAGTAACCAATCACTCCCAAGTGATACTTTCAGCTCAGTTGTTTGCATTTGATCATACTAGTATTTACTGCATCGTAtttattaaaagataatttatAAGCAATGTCGTGTAAAGTACAAATACACTGGCTGTATGCAATACATTCTTGTTCCTTTCTGTCAACTTTCTGTGGTGTAGGTTATGTTCTAGCAGCCCTGTTCCAGGGGTTCGGTTGGTTAAATGAAGAGCAAATGTAAACAGTGTGAAAATagttcagag

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00977 all species →	His_biosynth	Histidine biosynthesis protein	Family	Interproscan
PF00117 all species →	GATase	Glutamine amidotransferase class-I	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006062 all species →	Family	Histidine biosynthesis protein	Interproscan
IPR010139 all species →	Family	Imidazole glycerol phosphate synthase, subunit H	Interproscan
IPR017926 all species →	Domain	Glutamine amidotransferase	Interproscan
IPR014640 all species →	Family	Imidazole glycerol phosphate synthase HisHF	Interproscan
IPR050064 all species →	Family	Imidazole glycerol phosphate synthase HisA/HisF	Interproscan
IPR029062 all species →	Homologous_superfamily	Class I glutamine amidotransferase-like	Interproscan
IPR004651 all species →	Family	Histidine biosynthesis, HisF	Interproscan
IPR013785 all species →	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan
IPR011060 all species →	Homologous_superfamily	Ribulose-phosphate binding barrel	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21235 all species →	IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISF/H IGP SYNTHASE SUBUNIT HISF/H	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000105 all species →	Biological Process	L-histidine biosynthetic process	Interproscan
GO:0016763 all species →	Molecular Function	pentosyltransferase activity	Interproscan
GO:0000107 all species →	Molecular Function	imidazoleglycerol-phosphate synthase activity	Interproscan
GO:0016833 all species →	Molecular Function	oxo-acid-lyase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01663	HIS7; imidazole glycerol-phosphate synthase	EC:4.3.2.10	Histidine metabolism	ko00340	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.