Gene detail

Detailed information of PFX34457.1 in Stylophora pistillata

Genomic Location: Spis.scaffold4:1222768...1239956
NR annotation: no NCBI-NR hit recorded
Species abbreviation SPIST · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-Spis665_mrna

aacaaaatggcggagttCCAACGCCTGGGTATCCGCAAGTTCCCTAAAATTGCTACACGTCAAACAAGCGAAACAAGATATTGGAAAAAACTCAGCtTCCCCATCATCGTCAAAGAGTACGGTACAGTTAGCCACGTGGATTTCTGTAGATCAAAGCCCCACAATTTTATCGCCACTAGCTCTTCACGAATCCAAATTTACAGTTCCAGCTCAAACCAAGTCAACAAATCATTctcaaattttaaggaaaaagttTACTGTGGTAGTTTTCGTAATGATGGGAATTTGATAGTTGCTGGAAGAGAGAATGGCTCAGTGCAGgtaTTTGATGTCAACAGTCGAGCTGTTTTAAGAGATTTTAAGGGGCACACTAGCCCAGTTCAGGTTACCAAGTTTATGTTGGACAACTTGCATGTGATGTCTGGCTCTGATGATCGGTCTGTAGTGTGTTGGGATATAGCAACAGGACAGGATATAACAACATTTAAGGAACATAAGGATTATGTACGATGTGGTGCTCCTAGCCAGAGAAGTGAGGATCTTTTCGTTACagGTGCCTATGACCACTGGCTCAAGGTTTGGGATGTGCGCAGCCAGGGTAGTGTATTATCTATGGATCACGGCTCTCCAGTTGAAAGTGTACAGATCTTTCCAACAGGTGGATTATGTGTGTCAGCTGGTTCTAACATCGTCAAAGTCTGGGATATATTAGGAGGTGGAAGACTTCTAGCAGGATTCTCAAACCACCAGAAAACCATTACATCTATTTGCTTTGATGGAGATTATAAACGTCTATTGTCTGCATCGCTAGACAGGCATGTTAAAATCTATGATGTTCAAGATTATACAGTTTTTCACAGCATGGATTATCCATCACCAATCCTCAGTCTTGCAGTGTCACCTGACAATACACATGTTGTGACTGGTATGGCAAATGGATTCCTGTCCATAAAATATCGAATGAGACAAGATGTGCAACATGAGGTCCAAACAGCCAATAAGCTTACAGCTGGAACATACTCTTACTTTGTACGTGGCAAAAATTTCCAGCCTGATAAGGGTGATTTTGTCGTGTCCGCACCAAGGAAACACAAGTTGAAGGAACATGACCAATTGTTAAAAAAGTTTCAGTACTCAAAGGCTCTTGATTCAGTTCTGAGGAAGcctCCCTATAGTCGCACTCCACTTCTAGTCAGTCTTCTCCAAGAGTTGACACGGCGAAAGGGTCTGAAGAGAGCACTGGCTGGGAGGGATGAGGATAGTTTGGTGCCTGTGCTAGAGTTCCTTATAAGACATGTAAGTAATCCACGGTATACAGTTCTACTTATCGATGTGGCAAATGCTGTTCTTGATATCTACGGACCTGTGTGTGGTCAGTCAGCAAAAGTAGATCAGCTTTTCACTAGGTTAAAAGACAGGATTGGCAGTGAAATCCATTTCCAGCAGACATCTTTCGAGCTACTTGGAAGTTTAGATACTTTGTTTGCAGCAGCCGTTTCTACTTTATCACTTACAACCGATCACGACGAAGGACAGTAAACATCAGATGCGTACTAGTGGCTAAATAGGTGAGGAGACCAGCAGGCGAATACCCAAGCTAGTTACATGAGCGTTCAAATATTAGAGATCTTATAGGAACACTCGCcaattgtaaattattgtacagaaacaattttattaaaattgtcaaagaaaGACTGTAccaaaagcgaaaaaaaatgttcaatgaAAGAAACCATTCTCTCGAAGAATATGTTGATTAGGTTTTGATGTTTTACACGGACGGACTAATTGAGAAAACGGTACCTTCATGGGCggtaagtacttggtgtaatccttaatgtatgttaatgaatgcaaatgaccatgtattcccatatgttcttctgtattgatgcatgtatgaaggatttcaccaagtatCTGCCTCGTGGGCATGTCAACTTACTATCCTCAACACTCTGACACCAATCTTATCAATTCGATCTGTTGCTCTTATAAAATGTAATTCTCGCCAAACTttcgttttaaaacaaagtaaaacgaACTGATAAAGTTTGGAATTACCGAACCTCCAACTTGTGTTCCCTTGCTCGCTTTCCCTGCTTTACTAGCTCCAGTTTATATTGATTGCTTCATTTTAGTACTTAATGTGTAGGTAAGGCCCCCCAGAAAACTGTTCAAGCGAGTTTGGTTCCCTCAATAAATATGACCACAGTACTgagatttttattattactgatATCCATGACGCCGCCAACTCAAATGATACCACGGAATTGATTGATATATTTGAGGAAAAGCACGAGTTACCAATTCTAAAAGCTCTTTAGATTCGTTTTCGAACCGTTCAAGGTTTTCCTGAAATTTATTTAGTTAAACTAACTGGCCATTTGTTTCCTCTTATTGCTGTTCCCCAAAATTCACAAGTTTGAGTACCACACAATCAGAGAAACTATCACACCTACTATAGTTAAAAGGGGcacctaaatttttttttttaattcttgatTACGCGAACCCTCAGTGAATAACAATTTAAGAAGAAGTCGTCCACGAATTTTCCAGATTCTCGGGGGTCCTTGAGAAACTTTTTTACCTCAGGTTATCAGGATTTCTCCCAAAGTTTAATATCCTTAATCATCACCAGTATGGATTCAGACCACATCACTGCTATTGGCCATCTTAGAACTTGTCAATAATATATAtgatggttttgaaaacaatcagtACGATACTTACCTCTGAATACTTTGAAAATCTTagataattctcttttcttaccTTACATAAACTATGGCCCAGTTCAGACGCggatcttttcatgagccgaacctaattccttgaattaagtacatgaaaagatcgacgtctgaatcaatttggaacggctat

Protein

Gene family

Family type	Membership / link
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF12894 all species →	ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	Repeat	Interproscan
PF09384 all species →	UTP15_C	UTP15 C terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR024977 all species →	Domain	Anaphase-promoting complex subunit 4-like, WD40 domain	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR018983 all species →	Domain	U3 small nucleolar RNA-associated protein 15, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19924 all species →	UTP15 U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 15 FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0006364 all species →	Biological Process	rRNA processing	Interproscan
GO:0045943 all species →	Biological Process	positive regulation of transcription by RNA polymerase I	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14549	UTP15; U3 small nucleolar RNA-associated protein 15	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.