Gene detail

Detailed information of PFX34678.1 in Stylophora pistillata

Genomic Location: Spis.scaffold3:572877...587653
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Bckdhb

ATGGAGCTCAAAAACAACTGCCAAGTTCTCACATTCAACCAGCTCACTCGTCTTCACAGTGTATTAAACCAAACTGTGTTCATTCATGGCCGAGGAAATTTTCCTACTCTTGAAGTTCCACTCAAAGATTTAATAGAGACTGTGACAGCAGGCCTTAAAGAAGAAGGATTGAAAGTTCGAGACCTCCGATTGAATGGAAGTACTGCCAGCAATATCTTAAGTACCGAGAGCAACTGTTCGTACAATGATATTGACTTGATCTTTGGTGTGGAGATTCGCTCTAATTTGCACTTACAACAGATCAAGTGTGTCGTGTTGAACTCGCTTCTAAATTTCTTTCCCAGTGAAATTCCGAAGGATAGAATGAATAGCTGCATCCTGAAAGAAGCGTATGTTCAAAAGATGGTTAAAGTGTCGACTGACAACGATCGTTGGTCGTTAATTTCGCTTTGGAACAATCAAGGAAAAAACGTCGAACTGAAGTTCGTCGACTCGATGCGTAGGCAGTTTGAATTCTCGGTTGATTCGTTCCAGATTATCCTCGATTCCCTTCTTGGCTTCTACAAACTGTCACCAGTGCCGATGAAGCCCAGTTTCTTCCCCACCGTTGTGGCCGAGTCGGTTTACGGCGATATTAAGCTTGCCCTATATCATTTAGACAACAAACTGATAGCTACCCGTAACCCGGAGGAAATACGAGGTGGTGGTCTCCTTAAGTACTGCAATCTTTTGGTGCGAAGTTATATACCAGAAAACTATGAAGAGATCAAGATCCTAGAGAGATACATGTGTAGTCGGTTCTTTATCGACTTCAGCGATATCCATCAGCAGCAACAGAAGTTGGAGAGTTACTTGGCAAATCATTTCATCGGAGACAAGCGAGCTCAATATGAATATTTGATGGTTCTCTATCATATTGTTTCTTCTTCCACTGTTTGCCTCATGGGACACGAACGAAAACAAACCCTTCGCCTCATAGACTTTCTCGGGAAACAGCTCCGCGGTGAAGTGAGTTATGTGCCGATGGTGGTGTACAGCGATAAGACAGCACCTTACTCCTTCGTTCCTGCTTCTGGTTACATGGTGCCTGTATCAACCAGAAGCCAGACGTTAAGCCCGTATTCTTATGACAATCCTTGCCCTGATGACCTGACTCTGTTGAACCGCTCTCTTCGACAAAATCCCGAAACGGCCTGCATGGGCGATTTTAATCTTCCATCAATTAAATGGTCGCTAGACGAGTCTATTCCAACTAACCTAGGAGCCTCTCGAACTGCTGCATTTCAAATATTTGGTAGATGTGCTTCAACACTGACATTTGTTCCTGATTTTCCTTCACCTCTCTATGGAGAAACTCAAAAAATGAATTTGTTTCAGTCTTTAACAAATGCAATGGATATCATTCTTGATTCAGATCCAACTTCAGTTGTATTTGGAGAGGATGTGGCATTTGGTGGAGTTTTTAGATGTACAGTTGGTCTAAAGGACAAATATGGAAAAGACAGAGTCTTCAATACACCACTCAGTGAACAAGGAATTGTTGGTTTTGGAATTGGAATGGCTGCAGCAGGTGCTACAGCTATAGCTGAGATTCAGTTTGCTGATTATATTTTCCCAGCATTTGATCAGCTAGTGAATGAAGCTGCAAAGTTCAGGTATCGATCAGGAAATCTTTTCAACTGTGGAAGCCTAACTGTACGAGCACCATGTGGAGCAGTTGGCCATGGGGCTCATTATCATTCACAGTCTGTGGAAAGTTTCTTTGCTCATGTTCCAGGATTAAAGGTTGTCGTACCAAGGGGGCCAATACAAGCAAAAGGACTCCTTCTCTCTTCTATCAGAGACAAAAATCCAGTCATATTTTTTGAACCTAAGATCTTGTACAGACAGGCAGTTGAAGAAGTGCCTGTGGGAGACTATGAAATCCCACTCTCTGAGGCAGAAATTCTAGAAGAAGGTTCGGATGTGACAGTAGTAGGGTGGGGCACACAGATCCATGTCTTGCGAGATGTCTGTAAAATGGCAAAAGATCAGCTTGGAGTGAGTTGTGAACTTATTGATCTCAGGACAATTCTTCCTTGGGATGAAGACACTGTCCTTAAGGTAATTTTGTTTATCTTCATGATATAA

Transcript

rna-Spis432_mrna

ATGGAGCTCAAAAACAACTGCCAAGTTCTCACATTCAACCAGCTCACTCGTCTTCACAGTGTATTAAACCAAACTGTGTTCATTCATGGCCGAGGAAATTTTCCTACTCTTGAAGTTCCACTCAAAGATTTAATAGAGACTGTGACAGCAGGCCTTAAAGAAGAAGGATTGAAAGTTCGAGACCTCCGATTGAATGGAAGTACTGCCAGCAATATCTTAAGTACCGAGAGCAACTGTTCGTACAATGATATTGACTTGATCTTTGGTGTGGAGATTCGCTCTAATTTGCACTTACAACAGATCAAGTGTGTCGTGTTGAACTCGCTTCTAAATTTCTTTCCCAGTGAAATTCCGAAGGATAGAATGAATAGCTGCATCCTGAAAGAAGCGTATGTTCAAAAGATGGTTAAAGTGTCGACTGACAACGATCGTTGGTCGTTAATTTCGCTTTGGAACAATCAAGGAAAAAACGTCGAACTGAAGTTCGTCGACTCGATGCGTAGGCAGTTTGAATTCTCGGTTGATTCGTTCCAGATTATCCTCGATTCCCTTCTTGGCTTCTACAAACTGTCACCAGTGCCGATGAAGCCCAGTTTCTTCCCCACCGTTGTGGCCGAGTCGGTTTACGGCGATATTAAGCTTGCCCTATATCATTTAGACAACAAACTGATAGCTACCCGTAACCCGGAGGAAATACGAGGTGGTGGTCTCCTTAAGTACTGCAATCTTTTGGTGCGAAGTTATATACCAGAAAACTATGAAGAGATCAAGATCCTAGAGAGATACATGTGTAGTCGGTTCTTTATCGACTTCAGCGATATCCATCAGCAGCAACAGAAGTTGGAGAGTTACTTGGCAAATCATTTCATCGGAGACAAGCGAGCTCAATATGAATATTTGATGGTTCTCTATCATATTGTTTCTTCTTCCACTGTTTGCCTCATGGGACACGAACGAAAACAAACCCTTCGCCTCATAGACTTTCTCGGGAAACAGCTCCGCGGTGAAGTGAGTTATGTGCCGATGGTGGTGTACAGCGATAAGACAGCACCTTACTCCTTCGTTCCTGCTTCTGGTTACATGGTGCCTGTATCAACCAGAAGCCAGACGTTAAGCCCGTATTCTTATGACAATCCTTGCCCTGATGACCTGACTCTGTTGAACCGCTCTCTTCGACAAAATCCCGAAACGGCCTGCATGGGCGATTTTAATCTTCCATCAATTAAATGGTCGCTAGACGAGTCTATTCCAACTAACCTAGGAGCCTCTCGAACTGCTGCATTTCAAATATTTGGTAGATGTGCTTCAACACTGACATTTGTTCCTGATTTTCCTTCACCTCTCTATGGAGAAActcaaaaaatgaatttgtttCAGTCTTTAACAAATGCAATGGATATCATTCTTGATTCAGATCCAACTTCAGttgTATTTGGAGAGGATGTGGCATTTGGTGGAGTTTTTAGATGTACAGTTGGTCTAAAGGACAAATATGGAAAAGACAGAGTCTTCAATACACCACTCAGTGAACAAGGAATTGTTGGTTTTGGAATTGGAATGGCTGCAGCAGGTGCTACAGCTATAGCTGAGATTCAGTTTGCTGATTATATTTTCCCAGCATTTGATCAGCTAGTGAATGAAGCTGCAAAGTTCAGGTATCGATCAGGAAATCTTTTCAACTGTGGAAGCCTAACTGTACGAGCACCATGTGGAGCAGTTGGCCATGGGGCTCATTATCATTCACAGTCTGTGGAAAGTTTCTTTGCTCATGTTCCAGGATTAAAGgTTGTCGTACCAAGGGGGCCAATACAAGCAAAAGGACTCCTTCTCTCTTCTATCAGAGACAAAAATCCAGTCATATTTTTTGAACCTAAGATCTTGTACAGACAGGCAGTTGAAGAAGTGCCTGTGGGAGACTATGAAATCCCACTCTCTGAGGCAGAAATTCTAGAAGAAGgTTCGGATGTGACAGTAGTAGGGTGGGGCACACAGATCCATGTCTTGCGAGATGTCTGTAAAATGGCAAAAGATCAGCTTGGAGTGAGTTGTGAACTTATTGATCTCAGGACAATTCTTCCTTGGGATGAAGACACTGTCCTTAAGGtaattttgtttatcttcaTGATATAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07984 all species →	NTP_transf_7	Nucleotidyltransferase	Domain	Interproscan
PF02780 all species →	Transketolase_C	Transketolase, C-terminal domain	Domain	Interproscan
PF02779 all species →	Transket_pyr	Transketolase, pyrimidine binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009014 all species →	Homologous_superfamily	Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II	Interproscan
IPR012937 all species →	Family	Terminal nucleotidyltransferase	Interproscan
IPR005475 all species →	Domain	Transketolase-like, pyrimidine-binding domain	Interproscan
IPR033248 all species →	Domain	Transketolase, C-terminal domain	Interproscan
IPR029061 all species →	Homologous_superfamily	Thiamin diphosphate-binding fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12974 all species →	PRION-LIKE- Q/N-RICH -DOMAIN-BEARING PROTEIN PROTEIN 44	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:1990817 all species →	Molecular Function	poly(A) RNA polymerase activity	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0048255 all species →	Biological Process	mRNA stabilization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for PFX34678.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.