Gene detail

Detailed information of PFX34707.1 in Stylophora pistillata

Genomic Location: Spis.scaffold2:884347...901553
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

tdh

ATGTCTGAATTACCGGATTGCATGAAAGTTCTAATCAAGGAAGAGGAGAAACCATCGTATATGTACAAAGAAATTCCTGTCCCACAACCAGGAAACGGCGAATTGCTCGTGAAAGTTCTTAAAGTCTCTATATGTGGTTCTGATAACATATTGTACCAGTGGGGCGAAGCTGCAAAGGCAATAGCCACATTACCTTTCATTCCTGGCCATGAGTGTGTTGGAGAGGTTGTGAAGGTTGGTCCTGAATGTGATGAAAAATATTTCATTGGGCAGCGAATTTGTTGCGAAAATCACTTTTATTGTGGAAAGTGCTATCAGTGTTCACATGGATGTGCCCAGTATACCATTATTCCAGCGCAATACTGCTACCAGTTGAAAACAAACCTGGATGTGGACAGGGCCTGCCTTTTGGAACCATTTGGTGTGGCACATCAAGCAATGGAAGAAGTTTGTCCTGGAGGAGACACTGTACTGATTCAAGGGTGTGGTCCTATTGGCTTAATATCAGCTGGGATTGCCAAGTGCATGGGTGCTGTCAAAATCATTGCCACAGATATTGTAGAAGAAAGACTTCAAAAAGCAAAGCAAATGGGTGCAGATGTGCTAGTAAATGGGAAGACAGAAAATCTCAAAGATATCGTTATGAGAGAAACTTCAGGTGATGGAATTGGTTGCCTTGTTGAGTGTTCGGGAGCAGCGCCATTAGTAAACAGCTGTTTCTCCCTGTTGAGCAAAGAGGAGGATCGACCTAAATACCTGAACATTTCTAAAAATGACTCTGGCTCTGGTAGTAGCGGAGACAGGTTTGAGAACATTGAGGACGCAAGCAATTTTTGGATACAGTTGTGGGAGACGATAGGGACTGGAAACAAGGAAGCAGAGTGGTTGAGTAAGATCAAGGAAGCAATTGCTAGGAAAGTACCAATGCCGTCTGAGGGGACCTGGAACCTACAGTGCTCTGAAGCTGTTAGGTGTCTACTCAAGAAAAGAAACTGGAGTGCGCCAGGCCCAGACCGTCTTGTCAACTATTGGTGGAAGCGTGCGCATGTGCTGCATGAGGGAGTCACTAAAGCTTTTATGGGTATCTCGAAAAGCACTGAGGAATACCCCATTTGGTTTTCAGAGGGAAAAACGCGACTCACCCCTAAACCAGAGGCCAAGCTTAACAGAGTTTTGAAATCTACCAGTGCTGCCATGGAGGACATTGGACTTACATGGAATCCCAAGAAGTGCAATGTCTTTCATGTGAGAAGAGGAGTGCAGGTGAAAGATGCGGCGGGTGTGAGGATGGGTCAAGAGGGATTCGTGGGAAATCTGAAGGAGGGTTCAAGCTATAAGTTTTTGGGGGTGAAAGAGACGGTGATACAGGATGAGAAGTTGGCACTAGAATGCGCAGCGAAATCTTACCTTCAAAGACTGTCAGTGATTTGGAGCAGCCCTCTTCCTGATGCTAACCGTGTTACTGCAAGTAACCAGTTTGCATTCCCAGTTCTCCCATATTTGATGTGGACCCAGCACTGGCCCGTTACAGAACTTCGATCCATTGATAGAGAGGCGAGGAAGATCATATGCGAGAACGGAGGAAAACATCCGCCTAGCTCCACGGTGATGCAGTATCTTCCTAGGGACAAGGGTGGTCGTGGACTGCTTTCTGTTAAGCAAGAATATCTTACTAAGATCAAGTCTGCAATCAAGCTACATCAGAACTCCGATCCAACCATGAGGCTAATGCAGAAGTTTGAAGAGAGAGCGATCGAGAAGGGATTTACGTCGTTGATTAAGGAGGCATGCAAGTACACGGAGGAACTGGGAACAAGCTTGACTTTGGACTATCCGATTCCGTCGTGTAGCTCGCACCAAGCACCCAATATTTCTATATCCAGGAAGAAAGTTAAGGGTTATCTAAGGAAGTCCGTGACCGAAAAGTTGCAGGAAGAAGTTAAGGGCGAGCTGTGGCATGGACGGTTTTTGTGCGCAAGGTGGCAGGATGAAGACCTGAGCGACGATGAGTGCTTTGCTTGGCTGCGGGACTGGAACTCAGCGCCCACCCATACGATTAACGGGCTACTGGAGCTTTACGAACAGCTTACACCCACTAGAGTATACACAAAGCTCAAAACAGGAACTTCTCAAGGAGAGACCACGTGTAGGCTGTGCGGAGGCGCAACAGAAACTCTTGCGCATGTTTTAGCCGGGTGTTCTGCTTTAGCACAGTCGAAATACTTGGACCGACACAACGCTGTGCTAAAGGTGCTTTTCTTTGAGGTGTGTAAAGACCTGAAGCTAGTGGTCTCAGTACCACCATGGTACTCGTTAGTAGCACCCAAACCAGTGTACGAATCTTCGGATGCTCCAGCGTACTGGGATGTACCAGTGTACGCCGACCATAGTCACGTCAAGGCCAACAGAGTGAATGCTAGGTTCGTGGATCACAACAGGAAGCAAGTCTGGGCGGTGGAAATGAGTTGTCCCTGGTTAGATAACCGCGGAAAAAAGAAGGAAAAGACGGGAAAATATGCCCCACTGCAATGGGAGCTAAAAAAGCAATATCCTGGATATTGCGTGGAGCAGTTCAACATTGTTATCGATGTGCTAGGGGGGTGGTCGAAGGAGCTCGAGAAAACAATGAAGAAGCTTGTGGGCGATAGGAGCAAGGAAGTCCTGAGAAAAATATACAGGTTTGATCCGCAGAAAGTACTTTCATTGTTTAAACGGTATATGAAAGAGTTTCAAGATCCGAAAGTTCTTCCTACTTGCAATCACAACGTTTGTCGACAGTGTCTCAAAAATATTATAATGCGAGCAAAACCGGCTTACATACAGTGCCCTACGTGTCGACAAGAATCTTTTATTCGTGAAGATGACCTTGATGATTTACAGACAAACGTGTTCCTAGTGAAACTTCTACAACAAACCGAGCCGCAAAAAGAACGCGAGAAGCTTTCCAAGGGGATTCAAGCATGCGTAACAAAGGTGGAAGTTTTAGATGAATTGATAAAGGAGCTAAAATTGAGTCGACAACGAAAATTCGAACATGGAGAGTGTCTTAAAGAAGAAATTCACAGAATGGCTGATGCGATTGTCAGAAAGACAAGGCTGAGCGAATCAGAGTTGATCAGTAGAATGGAAGATTTTATTTCTCAAGAAGACAGCGTTTTCAGCCGCCTTGAAGAAAAGATGGAAGCTTTCAAACAGAAGTTACAAGCTCACGTTAATGTTTCTTTGAACGCTTACGATGAGAAGAACGATGGGGAAATTTCAAAGATGAAAAACACCTTAGCTTCCCTGGCGCACAATAGCACAGAGGATAAACTTTACAGAGAGATGCACGAATTAAATTCGTTTGCTGCTTCATTCGACGCAAACAAAGATCTTCTGCGAAATGTCGAAAGTCTGGGCATTGGAGACTTATCGATGAGTGATCCGAGCGGGGTGAAAATTGGAATTTCTACGCCTCTGCAGTTCATGAGGGTATCGCTCACAACACTACGTAAGATCACTGCTTCGAATTTTGGCTTCGAGTCTTTTTCACCCTTAAGCATCGCAACAGATGGTGACAAGCAGGTGGCTGTAGCTGATCCAGAGAACAACAACATTCTGATTTTGAATCGCAATGGTGATTTCGTGAATAGATTTACATCTCCAGCCAGCTCTCCCCAACCTGCCATGATGTTTTCGGGCGTTGCTTTTTCCAAGGACAAAAACGACTTGATCGCCGTCAACGGTGCTCGTGACGTACATCTCATCAATCCAATTGATGGAACCTTTAAAGTGAGTTACAGAAGCAGCTCGCAGTGGGGTGTCAAATACTGTTTTGTTTCCACTGATCAGAGTGGACGGTTTTTGCTCACATGCGAACCCTTAGCGAAACAATGCCGAGCATGCATCATCGTGCACTCGGATACGCCTTTCGGAAAACCCGATTTGAGGTTCGGGTTTTCTGGCGAGGGTACTTTGTTATTCCCTTTTAAAGTCCTTTACCATGAAAAGCATTACTATGTGACAGACATGGAAAAAGGGTGCATTATGGTGTATAACGAATGTGGCGATTTTCTTCGGCATTTTGGGGGTAAAGACAACGAAATTCATGGTCATGGTCGTCTGGTTTTACCGACGGGAATGATCTTTGATCCAAGAGAGGAAATATTTTTAGTGTGTGACTGGGGATCTAGTTCCATTCAAACGTACAAACCCGACGGAACTTTTCTAGAGGCATTCCCGATCGATGGACGCCCCACGGATATAGCCCTGTTCTCCGATGGCACCCTTGTGGTTTCTTCGAAGGACGATCAATGGATTCAGTTGATGTCGATATCAACACTCGGGGCGTTTGACGATGAGGAAGTGGGTAGGAAATGA

Transcript

rna-Spis300_mrna

ATGTCTGAATTACCGGATTGCATGAAAGTTCTAATCAAGGAAGAGGAGAAACCATCGTATATGTACAAAGAAATTCCTGTCCCACAACCAGGAAACGGCGAATTGCTCGTGAAAGTTCTTAAAGTCTCTATATGTGGTTCTGATAACATATTGTACCAGTGGGGCGAAGCTGCAAAGGCAATAGCCACATTACCTTTCATTCCTGGCCATGAGTGTGTTGGAGAGGTTGTGAAGGTTGGTCCTGAAtgtgatgaaaaatatttcattgggCAGCGAATTTGTTGCGAAAATCACTTTTATTGTGGAAAGTGCTATCAGTGTTCACATGGATGTGCCCAGTATACCATTATTCCAGCGCAATACTGCTACCAGTTGAAAACAAACCTGGATGTGGACAGGGCCTGCCTTTTGGAACCATTTGGTGTGGCACATCAAGCAATGGAAGAAGTTTGTCCTGGAGGAGACACTGTACTGATTCAAGGGTGTGGTCCTATTGGCTTAATATCAGCTGGGATTGCCAAGTGCATGGGTGCTGTCAAAAtcaTTGCCACAGATATTGTAGAAGAAAGACTTCAAAAAGCAAAGCAAATGGGTGCAGATGTGCTAGTAAATGGGAAGACAGAAAATCTCAAAGATATcgTTATGAGAGAAACTTCAGGTGATGGAATTGGTTGCCTTGTTGAGTGTTCGGGAGCAGCGCCATTAGTAAACAGCTGTTTCTCCCTGTTGAGCAAAGAGGAGGATCGACCTAAATACCTGAACATTTCTAAAAATGACTCTGGCTCTGGTAGTAGCGGAGACAGGTTTGAGAACATTGAGGACGCAAGCAATTTTTGGATACAGTTGTGGGAGACGATAGGGACTGGAAACAAGGAAGCAGAGTGGTTGAGTAAGATCAAGGAAGCAATTGCTAGGAAAGTACCAATGCCGTCTGAGGGGACCTGGAACCTACAGTGCTCTGAAGCTGTTAGGTGTCTactcaagaaaagaaactggagTGCGCCAGGCCCAGACCGTCTTGTCAACTATTGGTGGAAGCGTGCGCATGTGCTGCATGAGGGAGTCACTAAAGCTTTTATGGGTATCTCGAAAAGCACTGAGGAATACCCCATTTGGTTTTCAGAGGGAAAAACGCGACTCACCCCTAAACCAGAGGCCAAGCTTAACAGAGTTTTGAAATCTACCAGTGCTGCCATGGAGGACATTGGACTTACATGGAATCCCAAGAAGTGCAATGTCTTTCATGTGAGAAGAGGAGTGCAGGTGAAAGATGCGGCGGGTGTGAGGATGGGTCAAGAGGGATTCGTGGGAAATCTGAAGGAGGGTTCAAGCTATAAGTTTTTGGGGGTGAAAGAGACGGTGATACAGGATGAGAAGTTGGCACTAGAATGCGCAGCGAAATCTTACCTTCAAAGACTGTCAGTGATTTGGAGCAGCCCTCTTCCTGATGCTAACCGTGTTACTGCAAGTAACCAGTTTGCATTCCCAGTTCTCCCATATTTGATGTGGACCCAGCACTGGCCCGTTACAGAACTTCGATCCATTGATAGAGAGGCGAGGAAGATCATATGCGAGAACGGAGGAAAACATCCGCCTAGCTCCACGGTGATGCAGTATCTTCCTAGGGACAAGGGTGGTCGTGGACTGCTTTCTGTTAAGCAAGAATATCTTACTAAGATCAAGTCTGCAATCAAGCTACATCAGAACTCCGATCCAACCATGAGGCTAATGCAGAAGTTTGAAGAGAGAGCGATCGAGAAGGGATTTACGTCGTTGATTAAGGAGGCATGCAAGTACACGGAGGAACTGGGAACAAGCTTGACTTTGGACTATCCGATTCCGTCGTGTAGCTCGCACCAAGCACCCAATATTTCTATATCCAGGAAGAAAGTTAAGGGTTATCTAAGGAAGTCCGTGACCGAAAAGTTGCAGGAAGAAGTTAAGGGCGAGCTGTGGCATGGACGGTTTTTGTGCGCAAGGTGGCAGGATGAAGACCTGAGCGACGATGAGTGCTTTGCTTGGCTGCGGGACTGGAACTCAGCGCCCACCCATACGATTAACGGGCTACTGGAGCTTTACGAACAGCTTACACCCACTAGAGTATACACAAAGCTCAAAACAGGAACTTCTCAAGGAGAGACCACGTGTAGGCTGTGCGGAGGCGCAACAGAAACTCTTGCGCATGTTTTAGCCGGGTGTTCTGCTTTAGCACAGTCGAAATACTTGGACCGACACAACGCTGTGCTAAAGGTGCTTTTCTTTGAGGTGTGTAAAGACCTGAAGCTAGTGGTCTCAGTACCACCATGGTACTCGTTAGTAGCACCCAAACCAGTGTACGAATCTTCGGATGCTCCAGCGTACTGGGATGTACCAGTGTACGCCGACCATAGTCACGTCAAGGCCAACAGAGTGAATGCTAGGTTCGTGGATCACAACAGGAAGCAAGTCTGGGCGGTGGAAATGAGTTGTCCCTGGTTAGATAACCGcggaaaaaagaaggaaaagacgGGAAAATATGCCCCACTGCAATGGGAGCTAAAAAAGCAATATCCTGGATATTGCGTGGAGCAGTTCAACATTGTTATCGATGTGCTAGGGGGGTGGTCGAAGGAGCTCgagaaaacaatgaagaagCTTGTGGGCGATAGGAGCAAGGAAGTCCTGAGAAAAATATACAGGTTTGATCCGCAGAAAGTACTTTCATTGTTTAAACGGTATATGAAAGAGTTTCAAGATCCGAAAGTTCTTCCTACTTGCAATCACAACGTTTGTCGACAGTGTCTCAAAAATATTATAATGCGAGCAAAACCGGCTTACATACAGTGCCCTACGTGTCGACAAGAATCTTTTATTCGTGAAGATGACCTTGATGATTTACAGACAAACGTGTTCCTAGTGAAACTTCTACAACAAACCGAGCCGCAAAAAGAACGCGAGAAGCTTTCCAAGGGGATTCAAGCATGCGTAACAAAGGTGGAAGTTTTAGATGAATTGATAAAGGAGCTAAAATTGAGTCGACAACGAAAATTCGAACATGGAGAGTGTCTTAAAGAAGAAATTCACAGAATGGCTGATGCGATTGTCAGAAAGACAAGGCTGAGCGAATCAGAGTTGATCAGTAGAATGGAAGATTTTATTTCTCAAGAAGACAGCGTTTTCAGCCGCCTTGAAGAAAAGATGGAAGCTTTCAAACAGAAGTTACAAGCTCACGTTAATGTTTCTTTGAACGCTTACGATGAGAAGAACGATGGGGAAATTTCAAAGATGAAAAACACCTTAGCTTCCCTGGCGCACAATAGCACAGAGGATAAACTTTACAGAGAGATGCACGAATTAAATTCGTTTGCTGCTTCATTCGACGCAAACAAAGATCTTCTGCGAAATGTCGAAAGTCTGGGCATTGGAGACTTATCGATGAGTGATCCGAGCGGGGTGAAAATTGGAATTTCTACGCCTCTGCAGTTCATGAGGGTATCGCTCACAACACTACGTAAGATCACTGCTTCGAATTTTGGCTTCGAGTCTTTTTCACCCTTAAGCATCGCAACAGATGGTGACAAGCAGGTGGCTGTAGCTGATCCAGAGAACAACAACATTCTGATTTTGAATCGCAATGGTGATTTCGTGAATAGATTTACATCTCCAGCCAGCTCTCCCCAACCTGCCATGATGTTTTCGGGCGTTGCTTTTTCCAAGGACAAAAACGACTTGATCGCCGTCAACGGTGCTCGTGACGTACATCTCATCAATCCAATTGATGGAACCTTTAAAGTGAGTTACAGAAGCAGCTCGCAGTGGGGTGTCAAATACTGTTTTGTTTCCACTGATCAGAGTGGACGGTTTTTGCTCACATGCGAACCCTTAGCGAAACAATGCCGAGCATGCATCATCGTGCACTCGGATACGCCTTTCGGAAAACCCGATTTGAGGTTCGGGTTTTCTGGCGAGGGTACTTTGTTATTCCCTTTTAAAGTCCTTTACCATGAAAAGCATTACTATGTGACAGACATGGAAAAAGGGTGCATTATGGTGTATAACGAATGTGGCGATTTTCTTCGGCATTTTGGGGGTAAAGACAACGAAATTCATGGTCATGGTCGTCTGGTTTTACCGACGGGAATGATCTTTGATCCAAgagaggaaatatttttagtgtgtgACTGGGGATCTAGTTCCATTCAAACGTACAAACCCGACGGAACTTTTCTAGAGGCATTCCCGATCGATGGACGCCCCACGGATATAGCCCTGTTCTCCGATGGCACCCTTGTGGTTTCTTCGAAGGACGATCAATGGATTCAGTTGATGTCGATATCAACACTCGGGGCGTTTGACGATGAGGAAGTGGGTAGGAAATGAATTTGCCTATGATTTGTTGGTTATTAATCAAGAGGTGGCAAATTTCATGACTGTTACACCTGGACTAGGACAAAATTACTTTTACTTTGTTCGTAATTTTAAGTAGAGGACAAAAATAAATGTGAGAAATTGTATACCGTCCAATGGCAACATAATACGTAGCATCCATTAGTTATCCATCAACTGTGTCGCTCTCATATGCGCTGGTTTCGTTATCGACTGCATCACTGTTAGCTCGCCTTAGACCTGGCAACTCGCCTTTGTTTTCTACCTATCCGCGA

Protein

Gene family

Family type	Membership / link
Ubiquitin family	E3\|E3 activity RING\|RING · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00107 all species →	ADH_zinc_N	Zinc-binding dehydrogenase	Domain	Interproscan
PF08240 all species →	ADH_N	Alcohol dehydrogenase GroES-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011032 all species →	Homologous_superfamily	GroES-like superfamily	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR013149 all species →	Domain	Alcohol dehydrogenase-like, C-terminal	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR050129 all species →	Family	Zinc-containing alcohol dehydrogenase	Interproscan
IPR002328 all species →	Conserved_site	Alcohol dehydrogenase, zinc-type, conserved site	Interproscan
IPR013154 all species →	Domain	Alcohol dehydrogenase-like, N-terminal	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR011042 all species →	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43401 all species →	L-THREONINE 3-DEHYDROGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for PFX34707.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.