Gene detail

Detailed information of PFX34747.1 in Stylophora pistillata

Genomic Location: Spis.scaffold2:793153...809718
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-Spis291_mrna

CCGTTGTCCGCCAAAATGGCGAAAAAGTTGTCTCTAGAAAACTCTTAAATTTCGTGGGTATTCAAGCGAAATTCAATATTTTGCAGAGAATTGTTGAAGgttaaacatattttttatcgttatGGCTGGTTTTGACCAAGCAGGACTGCCGGGACCAGAGTTTATTACACAACGACTAACTGCTGCTCAAGATTTCGAAACTGTCAACTTTATCGAGAATTTTCAACAGGAAAATAGTATCATGCTGCCTTCTCTGCAACCTGCTTTGCCCTTTCTAGACCTTCATGATGTTCGCAGGTTACAGTTCAATAGTTTTGTGATGGAAAACTTGCGTGAAAAATTGCTTGATCAAGTGAAGCTTTTGGAAGTGGACAAACTGAAGAGTTTGCTTGATCAGTGCTTTCCGTTCATCCACGTGGCTCATCTCCGGCCAGTCGTGATGGAAGTCATGAAATATCTTCCAAAAGTCCCTGATGAATGCCTTGAGCAACTGGCAAATGACACTAAGCTGTACCAAGATTGTGCAATTGAGGTGAAAAGGCAGATCTGGATCAAGCATCATGCATTGTTTGGGGATGCAGTTGGTCCCCTTTTGAACCAATATGTAGAGGAAAAGTACAATGTTCTTTTCTCCACAGAACCTTTGAATTCTCACACATTCTTTTCAGTTCCATCCAAAACAAGGCGACAAAATCCAGTTGTACAAAACTTGGCTAAGATGATTGGAAAATCTCTTGAACTGTACAACCTAGTGCTACAATTTTTGAGAACATTATTTTTAAGAACCAAAGAAGTTCATTACTGCACTCTTAGGTCAGAGTTACTGATGGCAGTGCATGATCTTGAAATTAAAGACATTAAGGACATTGATCCATGCCATAAATTTACATGGTGTCTTGATGCCTGTATTCGAGAAAAAGTGATAGAAGGAAAAAGGACAAAGGAATTGCAAGGATTCTTGGATCATGCAAAGCATAGTGAAGAACAGGTTCTTGGagATATTGCAATGATCCTCTGTGATCCATTTGCTATCAACACTGTTGCCAGGAGTGTAATTAAGCTTTTGCAAAGACTTGTTAACACTGAGTCATTGCCAAAGACAAGTTCAGATGTGAGTTTTCTTTTACGAGTGTTCAACCTTGGAGTTAGTGCCTGGGAGATGATCAGCAATCAGCATTTTACTGAAGTGGCACTGAGTGGAGAGTTGATTCACAAGTTTCTTCCAATACTCATGTCTCTGATGGTGGATAGTAGCCTCCACTCTTTGCACAGTAAACTCCCTGTTGATGAGGACAATGCTGATATGGAGGACCCTGTCCAGTTCATTGACTACTTTGCAGAAATTACGTCATCAAACTCAGTTGCCTTCACACTTGCTTGGTGTTATCTTCTTCATGTCATTAATCAAAGAGACAGACACACCCTTGTTGCCATCTTGCCCTGGTTTGCCAACACATGTCAAGAACGAGCATTGGATGAAGTCTCCCTTCACACTCTGATCAGCTCACTAGCTACTTGGCAAGAAGAGTTTACACAtcttgatttttgtgatgcgGTGTTTGACCAATTTCTTCTTCCCTTGGTACCTCACACAAGTGTAATGCGTCACACTCTGCGTTTGCTATGGTACATTCTTCCCAAATTGGATCCTCAAAAGGTCGTACACATTTTGACCATAGCACAGCCATCAAGTGAGCACAATGACGCTGTTCATGATCTGCATGCCTTGTTAGTTGAACGCATTGCAAATTCCAGTGCCCTTACACCTGGTTCATCATCTGTGGAGCAGCCATCTTCAGCATCATCCTTGTCATCATCTTCACATAGTCCACTAGAGTACATTCAGCCTGCCAGTAGCTAATCATCACCACAAACTAAGGACAACTCTGATGTTCACATACAAACTCTAAAATATAGGTTTAGTTGGGCTTTTTAGTACTAATTAGTGGTGAAGACTTGGTCAGCTGTCTGATCAAAACTGATGTTATCACATGTTTAGACATGATTGCTTCACTGATGTTATCACATGTTTAGACATGATTGCTTCACTGCAAAATCTTCTCATACTCATAAACTCAATGGTCTCAGTGAAGGAGACTTGATCAACACTTCAGGGAAAAGTTGAGAAATGTGATCTGCTAAGGACAAGCATAACTGTTATTTACCAAAGCTTAAGGCTCTAGGGGAAAAATGGTGATGTTGATTTACATGACACACAAATTATGATAGTTTACAATAGCAGACTTCAATAAATGATTTCTTGCTCAATTTGCAGAGTttgtttctcaatttttttgtaaatcacGTTGTGGTAACTAAGGGAAGTGGTCTGTCATGTTTCATGGACAGGGTAGGCCACAACTATGCATGTGTATGTAGGTGTCTGCAGGTAATGTGGTGGGCTTACAGCCTTAAGAAGGGAGAAAGTGCATTAAATCTTAATAGTTATTATCACTGAGCTCTGCTGTTGCAGTTTGTGTAGCGTGTTGTACTAATTATTGTATTTAAGTTACTGGTATTTATAGAACTGGTAGATGACTACAAGAAACATCTAATAGAACAAATAAAGGGAGTTTTCCCCTTGTAATTGTCAGATACATTTACTACAAACTTCAGGCTGACAGAAGTCATTCATGGATGGAATCCTTTCACCTATGAAATGTTATTCAgaacaactttgaaaaaaatgttctacATTAATTCTAATTTTCTAGTatggaacattttcatttttctttctgataatATGGATAATTTCATGTAGCTGTGTTGGTGTTAGGTGATTTTGTGGGTTTaaagaaaacatatttttgagtccaaagtgaattttattgttgcaaaaatgaaaactctTTAGATTTATTACTGTGCTTATTCATCTAGTTTGTACAGTTAGTCTTGtcttcaaaaatgatttttttttacaaacaaatGCAATAAGTACTTGAAGCAAAGCTTTCAATGATCTTAGGAATGTACAGCTTGGCAAAATATTCTTTAAGTTTCCCTAACCAATGAGATAATCACTCCAATTTTGGGAAATCACTGGCTTTAATTCCTTTTTACTAATTAACACATATGAAGTCTTAATGAACCAAAGAGTGTCTCTGGGGAGTATGATCGTCCAAGTGAAAGTTTTTCTGATCAAGACTAATGTTTGTGGAAGTGACCTCTGGGCTGTAATCATTGTTGGAGTCAAGTCACTCAACTGGAAAGTTAATGTCCACTGAATTTATCAAATCACTCAGCTTTCTACCATAAGAACCCATTTTGGGGCTTTCCTAGCATACATGGTCACAGCACTTCGCATATGTGAACAGACTGCCTATATGGTCACATTAGCTCGTAGTTACCCTACTATTAGATAACCACACTACCTTGCCTTAGCAAACTGTCATCTAACAACCTTGTCAAGGTTATGCAAAACTAAGCTAGTCTGTTAAATACTTCTTCAAACTGAGAACAATATTTTAAGCTTCACAGGCATTAATGATGGTATTCAGACCTTTTTGAAGTGCACAAACTGCAAAAGGGATCTATCAGACATTGAAATTGATGAGTTAAATATGAAATGCTTTTGACTGCGGGaccaaagaaaatgataatgagCAAGTCTTGTATTATGAGAGACAACAAATTTAATCCTCCCTGGATTTCAGCGGAACtcattcagctctgtcggaAGAAAAAACATCTCTTCAGGAAGGCAAAGTGAGTAAACACAGATTTCTTGTGGATGAGATGGCGCACTTTGAACAACTCTGTTAAGAAAGAGTGTAATGCAGCAAAGCGGAACTATGTTAATGACCTGGCTGATGAGCTTGCTACTAACAACACAAGGAGCCCAGATAAGcaacgagtctggttgtttattcgaaa

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007533 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06209 all species →	COBRA1	Cofactor of BRCA1 (COBRA1)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010405 all species →	Family	Cofactor of BRCA1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13503 all species →	NEGATIVE ELONGATION FACTOR COMPLEX MEMBER B	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0045892 all species →	Biological Process	negative regulation of DNA-templated transcription	Interproscan
GO:0032021 all species →	Cellular Component	NELF complex	Interproscan
GO:0034244 all species →	Biological Process	negative regulation of transcription elongation by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15180	COBRA1, NELFB; negative elongation factor B	-	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.