Gene detail

Detailed information of PFX34785.1 in Stylophora pistillata

Genomic Location: Spis.scaffold2:1433170...1447144
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

SYNRG

ATGGCTTTCAATAACTTCAACATTCCAGCTTCAGGGCAAATGATTCCATCTCAGAATCAAGGTAACTTCAATCAGATGGCAGCACCAGCTCAACAGATGGGAGGTTTTCAACCCAGCCAACCCCATGGTGTTCAGGGTTTTGGTTCTCATCAAGGCCAGAGGTTTTCTGGTCCTCCTCCTGGATATCAGATGGGGTTACCCATGGGATCTCAAATGAGTCAACATATGGGTCCTCAAATGAACTCACACATAAGGCCTCAAATGGGACCCCAAATAGGACCTCAGGTGGGATCTCAAATGGGACCTCAAATGGTAAATGTACCTCAGAGTGGTATTCAAATTGGAGGATTTCCATCAAATGTGCAGCTGGGTCACCAGTTTCCAAAGCAGCAACAAATGAGGATGGATCAGCAAAGAAAACAAGCTGAAGAAAATGCTAAGAAACAACAGGAACTAATCAAGAAAAAGCAATTTGAGGCTCAACAGCTAAAACGTCAGGAGTCTTTTACTACTAAAAGGTTGTCAAACCCAGATGCTTTAAACAGCTTGTTTGGTAAAAACAAAAATAGTGGAAGTTCATCAATTGCTGATTTAATTGGGCCCCTTGGCAAGGAGTCAGAATCTAAGACACAATCAAAAAAACCATCCAGTATATTTTCCCGACCTGGTAGCAGTGCCACAGGTCAGTCTTCAATTCCCAACCAAGGCCAGTGGGGTTCAGGATTTATGACTTCAGGAAATGTGAATCCTCAGGGGAGTCAAGCAAGTAGCATGGATGACTTTGGGGACTTTTCACAAGGACCGTCTTTTCCATCTCAGGGGGGTGGCAGTAATGCAGAATTCAGTGACTTTCAGGGAGCAGCTCAACCGGTAGCACAGGGTAGAGGTACTTCCTTTCCTGCTATGGGATCAGGTGCACCAGCCCCTCCTAATATGAGTGGCAATGTGAATGTTTTTTCTCAAACTCAGTCACTCCATGGTGCTATTAGAGAACCATCCGGGAACATTTTTTCTTCCAATTCTGCAACTGAAACTCAGCACAACAGTTTTCCACCAGCACAAAATATGGCGACACCTTTATCTATGCATGGAATGCTAACAGCAGCTGTTGGTGCTCCATTTGCAACTTCATGGGTAGGACCATCCAATGTTGCTAAAGGGAGCCAAATGCCTCACTTTGGGGCAGATTCTAACATACATGGTGCATCTACTCAAGGAGGTCATATGACCCAGCTTGTGGGGAATAGTGCACCAGAGATGTTTTCCAATGTTGCCAGGAACACACCAAGTGGAGGAACAATGCCTCAAACAGACACACCTCATAATCAAATTGGCATAGGAAATCAGCAAGGTAGTCACTTAATGAGAAATTTAGCCCTGGGTGGTAGTATTAAACCACAATCTACTATGGGCCAATATCGGGATGAAACTGGATCACAGCCCTCCAATCCTGGTGCAGAGCCTAAATTGCAGCGACATTCAACAGAATCTACCCAGGAACCAGCTCCTGAAGCTGAAGACACAGCTGAAAGGAAACTAGAGCTGTTGTATGGTGTAAGTCTTCCTGAGTGGTGTGTTCATGGCACAGACCTACCAGGAATTTATAAGCAGATAGCAGAGAAAACAAGCAATGCATGTGATGACCTCATTGACACTAATGGTTTGTTTCCCATTCTCATGGCTTCTGATCTTCCCCGTGACCAGCTAGGTCACATTTGGAACCAGGCTAATAGAGCAGTTCCAGGTCAGCTCAACATGTTGGAACTGAGGATTGTGTTAGGATTGGTTGCTCTGGGTCAGGCTGGTTTGAAAACAGAACGTCTCACTCTTGAGAAGTTGGCTACTTGCAAGGCTGCTCCTATTCCATCCATTCCTGAGGACGTTTTACAGAATAAGGGGCGAGGCTGGAGTTTCTCAGAGTCATTACATGAAGAGTCCAAAGATAGTGGATCTTTAGAAGAAAATATATCGATGGGACATCTTTGTAGTGCCTCCAGTAGTCAGACCATTGACCCAAATGATAAGTATAGTGTATTTAAAGCTGTTTCTCAACCTGATACGAGTAACACTGCAGCATTACCTTCAATGGAGTCCAAAGAAAGATTTGGGGTATTTCAATCTTCCGAATCACCTGCTGTTAATGTTAAGCTTCAAGGTGGTGGAGTACCTCTATTTCAAGGTGTTCTTGGCTGGAACTCTGGAGAAAAATTTCCAAAGGATGATGAGTTTGGTGATTTCCAAGGCCAGGCTCACCAGAATAACAGTCTAAAACAGAATGACTTTGGAGAATTCAATAGCAAACCAACTTTACTTAGCATGACAACTGAGTTGAACAAAAACTCCAGCCAATCAAAAGAAGATGATTTTGGTAGTTTCCAGACAGGAAGTAGTCAAACAAGTCTAGGTTTCAATGATGCTTCAATGCTTACTCCAAAGTCCATGGAGGAGGATTTTGGTGATTTCCAGACTGGGAAGCAATCTGAGATTTTTGGTACTTGGCAAGAATCAAAACAGCAAGACCAGCAACAAACTGCTGTTCAAGAATTTAAGAATTGCAAAGGTAGTGGAAACCTTGACAGTGAGGTTAAGACATGTGAAGTGAAGGAAGTTAAATTACTTCCCACAGCAGCTCTCAGTGAGTCCTCTGAGTCTACACTAAGTAATGATGACAACAGCCTGACTGGAATGGATGACTCTGGTAACTTTCAACCCTGTCCAGGACTGTTTTCTAATAAAACTGGCATAAGCTCTGGTCATCATGGTGCTAATAAGCTTACATCATCGCTGGAGAAGTTTAAACTCTCCATTAATTCTCAGGTATCTAGTGTTGGAGGTGTCAAAAGTCACAGCTTGCCAGGATTTGAAGATGGAGGAAGAAAATTAACTGAAAGAAGAGAACAGGTGGATAATACCAAACAGGAGTCCAAAGGAAACCAGAGTAGTTTTGTAGGTTTTCCATTGTTGGTTAATGACCCTCCTAAAACTACCAGTTTGACTGACAAACCTGAGGACAGATATGGTGCTATTAGAGATGCTGATTTCAGCTCTGGAGAAGGAATTTTCAGTGTTCAGCAGCCAGGAGTAGTAGAAGCTGCATCAGAAGATGATGGATTTGCTGATTTTGGGGGCTTTGAAGTAGCTGACCAATTTAAGTCTGGGAACAATGATGACTTTGGAGAATTCAAATCTACAAACACTTCACAGAGTCAGTCCTTTGGTGTGTTTGACAACTCTCAGCTGGGTCAACAACCAAAAACAGCTTCTATTGAAAATCATAATCAGGATTTTGGTAGTTTTAATTCATTTGGCAACACAAATCTGACTAAACCTACACCTCACAAAGATGATCAAGATGAATTTGGGGCTTTTGGGTCATTTGTTACTGGTGTATCGCGTGAAAGCAGCAGCAGACCACGTTCCACTTCTAATAGTGACTCACTCATTAACTCAGTGTCACTGGAGCCTACAGAACGTTATAAGGTCCTCTCACATGACTCTGGGGATGTGGATCAACATGCAAATGCATGGAGCCGTTGTCTTAACAGCTGCCTTTTAACCTTGGCAACAGCTACATTGTCAATTCAGAAAATGGTTGAGCAGTCTGTGAAGGAGGAAGTCCTTGAGTCCAAAGAAGGAGCCACATATTTTTCAGCCATAGTTGAAATTTACAGAGTTACCCTAAGGATAAATGCATCAGTAACTAAATCAGCACCAAATAACACGAAGCTGAGAGATATCCACCAAGAGATTGAGAGCACATGGAAAAACATTGCAAACTTTCTTTCTGGCTCCACCCTTTTGCCACCAAGGAGTAGTCTAGATTTCTCAACCCATCATGTTTCAGTTAGTGAAGATGGACGCTCAGCTTGTGGAATTTGTCTGTTAAATGTTGACAAGGGTTTACAAGATTCATCCAAACACAGCAATGGAAAGCTCACATATGGAGGCCGACAGTATCATTGCACATGTGCAAACTTTTGGTGTAATAGAGTGGATTCTGTTCTCCCTGCTCTGTTGCCAATTAACAGTTTGATATGA

Transcript

rna-Spis341_mrna

CAGATATGGCAGATGAAGTTATTTGGCATGGTTCATGTGTTTTTTCGgtcataattaacaattatagTCAGAAAAACTTCCGGTGAAGATCTCTGGAACGAAAGCGAGGGATCAAATGGCTTTCAATAACTTCAACATTCCAGCTTCAGGGCAAATGATTCCATCTCAGAATCAAGGTAACTTCAATCAGATGGCAGCACCAGCTCAACAGATGGGAGGTTTTCAACCCAGCCAACCCCATGGTGTTCAGGGTTTTGGTTCTCATCAAGGCCAGAGGTTTTCTGGTCCTCCTCCTGGATATCAGATGGGGTTACCCATGGGATCTCAAATGAGTCAACATATGGGTCCTCAAATGAACTCACACATAAGGCCTCAAATGGGACCCCAAATAGGACCTCAGGTGGGATCTCAAATGGGACCTCAAATGGTAAATGTACCTCAGAGTGGTATTCAAATTGGAGGATTTCCATCAAATGTGCAGCTGGGTCACCAGTTTCCAAAGCAGCAACAAATGAGGATGgatcagcaaagaaaacaagctGAAGAAAATGCTAAGAAACAACAGGAACTAATCAAGAAAAAGCAATTTGAGGCTCAACAGCTAAAACGTCAGGAGTCTTTTACTACTAAAAGGTTGTCAAACCCAGATGCTTTAAACAGCTTGtttggtaaaaacaaaaatagtggAAGTTCATCAATTGCTGATTTAATTGGGCCCCTTGGCAAGGAGTCAGAATCTAAGACACAATCAAAAAAACCATCCAGTATATTTTCCCGACCTGGTAGCAGTGCCACAGGTCAGTCTTCAATTCCCAACCAAGGCCAGTGGGGTTCAGGATTTATGACTTCAGGAAATGTGAATCCTCAGGGGAGTCAAGCAAGTAGCATGGATGACTTTGGGGACTTTTCACAAGGACCGTCTTTTCCATCTCAGGGGGGTGGCAGTAATGCAGAATTCAGTGACTTTCAGGGAGCAGCTCAACCGGTAGCACAGGGTAGAGGTACTTCCTTTCCTGCTATGGGATCAGGTGCACCAGCCCCTCCTAATATGAGTGGCAATGTGAATGTTTTTTCTCAAACTCAGTCACTCCATGGTGCTATTAGAGAACCATCCGGGaacattttttcttccaattctGCAACTGAAACTCAGCACAACAGTTTTCCACCAGCACAAAATATGGCGACACCTTTATCTATGCATGGAATGCTAACAGCAGCTGTTGGTGCTCCATTTGCAACTTCATGGGTAGGACCATCCAATGTTGCTAAAGGGAGCCAAATGCCTCACTTTGGGGCAGATTCTAACATACATGGTGCATCTACTCAAGGAGGTCATATGACCCAGCTTGTGGGGAATAGTGCACCAGAGATGTTTTCCAATGTTGCCAGGAACACACCAAGTGGAGGAACAATGCCTCAAACAGACACACCTCATAATCAAATTGGCATAGGAAATCAGCAAGGTAGTCACTTAATGAGAAATTTAGCCCTGGGTGGTAGTATTAAACCACAATCTACTATGGGCCAATATCGGGATGAAACTGGATCACAGCCCTCCAATCCTGGTGCAGAGCCTAAATTGCAGCGACATTCAACAGAATCTACCCAGGAACCAGCTCCTGAAGCTGAAGACACAGCTGAAAGGAAACTAGAGCTGTTGTATGGTGTAAGTCTTCCTGAGTGGTGTGTTCATGGCACAGACCTACCAGGAATTTATAAGCAGATAGCAGAGAAAACAAGCAATGCATGTGATGACCTCATTGACACTAATGGTTTGTTTCCCATTCTCATGGCTTCTGATCTTCCCCGTGACCAGCTAGGTCACATTTGGAACCAGGCTAATAGAGCAGTTCCAGGTCAGCTCAACATGTTGGAACTGAGGATTGTGTTAGGATTGGTTGCTCTGGGTCAGGCTGGTTTGAAAACAGAACGTCTCACTCTTGAGAAGTTGGCTACTTGCAAGGCTGCTCCTATTCCATCCATTCCTGAGGACGTTTTACAGAATAAGGGGCGAGGCTGGAGTTTCTCAGAGTCATTACATGAAGAGTCCAAAGATAGTGGATCTTTAGAAGAAAATATATCGATGGGACATCTTTGTAGTGCCTCCAGTAGTCAGACCATTGACCCAAATGATAAGTATAGTGTATTTAAAGCTGTTTCTCAACCTGATACGAGTAACACTGCAGCATTACCTTCAATGGAGTCCAAAGAAAGATTTGGGGTATTTCAATCTTCCGAATCACCTGCTGTTAATGTTAAGCTTCAAGGTGGTGGAGTACCTCTATTTCAAGGTGTTCTTGGCTGGAACTCTGgagaaaaatttccaaagGATGATGAGTTTGGTGATTTCCAAGGCCAGGCTCACCAGAATAACAGTCTAAAACAGAATGACTTTGGAGAATTCAATAGCAAACCAACTTTACTTAGCATGACAACTGAGTTGAACAAAAACTCCAGCCAATCAAAAGAAGATGATTTTGGTAGTTTCCAGACAGGAAGTAGTCAAACAAGTCTAGGTTTCAATGATGCTTCAATGCTTACTCCAAAGTCCATGGAGGAGGATTTTGGTGATTTCCAGACTGGGAAGCAATCTGAGATTTTTGGTACTTGGCAAGAATCAAAACAGCAAGACCAGCAACAAACTGCTGTTCAAGAATTTAAGAATTGCAAAGGTAGTGGAAACCTTGACAGTGAGGTTAAGACATGTGAAGTGAAGGAAGTTAAATTACTTCCCACAGCAGCTCTCAGTGAGTCCTCTGAGTCTACACTAAGTAATGATGACAACAGCCTGACTGGAATGGATGACTCTGGTAACTTTCAACCCTGTCCAGGACTGTTTTCTAATAAAACTGGCATAAGCTCTGGTCATCATGGTGCTAATAAGCTTACATCATCGCTGGAGAAGTTTAAACTCTCCATTAATTCTCAGGTATCTAGTGTTGGAGGTGTCAAAAGTCACAGCTTGCCAGGATTTGAAGATGGAGGAAGAAAATTAACTGAAAGAAGAGAACAGGTGGATAATACCAAACAGGAGTCCAAAGGAAACCAGAGTAGTTTTGTAGGTTTTCCATTGTTGGTTAATGACCCTCCTAAAACTACCAGTTTGACTGACAAACCTGAGGACAGATATGGTGCTATTAGAGATGCTGATTTCAGCTCTGGAGAAGGAATTTTCAGTGTTCAGCAGCCAGGAGTAGTAGAAGCTGCATCAGAAGATGATGGATTTGCTGATTTTGGGGGCTTTGAAGTAGCTGACCAATTTAAGTCTGGGAACAATGATGACTTTGGAGAATTCAAATCTACAAACACTTCACAGAGTCAGTCCTTTGGTGTGTTTGACAACTCTCAGCTGGGTCAACAACCAAAAACAGCTTCTATTGAAAATCATAATCAGGATTTTGGTAGTTTTAATTCATTTGGCAACACAAATCTGACTAAACCTACACCTCACAAAGATGATCAAGATGAATTTGGGGCTTTTGGGTCATTTGTTACTGGTGTATCGCGTGAAAGCAGCAGCAGACCACGTTCCACTTCTAATAGTGACTCACTCATTAACTCAGTGTCACTGGAGCCTACAGAACGTTATAAGGTCCTCTCACATGACTCTGGGGATGTGGATCAACATGCAAATGCATGGAGCCGTTGTCTTAACAGCTGCCTTTTAACCTTGGCAACAGCTACATTGTCAATTCAGAAAATGGTTGAGCAGTCTGTGAAGGAGGAAGTCCTTGAGTCCAAAGAAGGAGCCACATATTTTTCAGCCATAGTTGAAATTTACAGAGTTACCCTAAGGATAAATGCATCAGTAACTAAATCAGCACCAAATAACACGAAGCTGAGAGATATCCACCAAGAGATTGAGAGCACATGGAAAAACATTGCAAACTTTCTTTCTGGCTCCACCCTTTTGCCACCAAGGAGTAGTCTAGATTTCTCAACCCATCATGTTTCAGTTAGTGAAGATGGACGCTCAGCTTGTGGAATTTGTCTGTTAAATGTTGACAAGGGTTTACAAGATTCATCCAAACACAGCAATGGAAAGCTCACATATGGAGGCCGACAGTATCATTGCACATGTGCAAACTTTTGGTGTAATAGAGTGGATTCTGTTCTCCCTGCTCTGTTGCCAATTAACAGTTTGATATGACCAGCTGTTATAACTGACCAGGAATGACAACAATATTCAGTATTAATACACAATCATGATTCTGTGATACTAGAATAATACTCTTTAGAAAGCTGAATAAATGACTGGAAAAGTGCATGAATCCTCAACAGTTAATCCAACAAGACTGGTTGTTGGGGAGAAAAACTGCTTGTGATAGAAATAAGAATATTCAGATAGAAAGTAGCAATTGGTAAAAGGCAGACTGACAAATGAAACAGAATGGAGTAATACAACATATATTTAGGTAAGGTTGATAGAGAATACAGAAATGCATGTATCTTTCATCTGCATTTGAATCCTAATTTATTAGAAAGATGTGGTAAATATGTTTGTTGGTTGTTGGGTTTTTGTAATTAATCTTTTAGTAACTAGAGTTTAACTCCAGAGTTTTCCAGAAAagagaatctttttttttttccaataaataCGGTCAGCATATTGTTGTCAAAAAGGTCATGGTTATTCAATTACTTGAAATTGAATAATGATTGTGATAGTAATAAAATACTCTTGGCCC

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006279 (this species only) · gene tree & orthology

Pfam domain

No Pfam domain signature was recorded for PFX34785.1 in Stylophora pistillata.

InterPro

InterPro term	Type	Description	Source
IPR039656 all species →	Family	Synergin gamma	Interproscan
IPR000261 all species →	Domain	EH domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15463 all species →	AP1 GAMMA SUBUNIT BINDING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0030130 all species →	Cellular Component	clathrin coat of trans-Golgi network vesicle	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25219	SYNRG; synergin gamma	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.