Gene detail

Detailed information of PFX34851.1 in Stylophora pistillata

Genomic Location: Spis.scaffold1:2693822...2700207
NR annotation: no NCBI-NR hit recorded
Species abbreviation SPIST · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03876 all species →	SHS2_Rpb7-N	SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397	Domain	Interproscan
PF00575 all species →	S1	S1 RNA binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036898 all species →	Homologous_superfamily	RNA polymerase Rpb7-like, N-terminal domain superfamily	Interproscan
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR005576 all species →	Domain	RNA polymerase Rpb7-like , N-terminal	Interproscan
IPR003029 all species →	Domain	S1 domain	Interproscan
IPR045113 all species →	Family	RNA polymerase subunit Rpb7-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12709 all species →	DNA-DIRECTED RNA POLYMERASE II, III	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006351 all species →	Biological Process	DNA-templated transcription	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0000291 all species →	Biological Process	obsolete nuclear-transcribed mRNA catabolic process, exonucleolytic	Interproscan
GO:0000932 all species →	Cellular Component	P-body	Interproscan
GO:0003697 all species →	Molecular Function	single-stranded DNA binding	Interproscan
GO:0003727 all species →	Molecular Function	single-stranded RNA binding	Interproscan
GO:0005665 all species →	Cellular Component	RNA polymerase II, core complex	Interproscan
GO:0006352 all species →	Biological Process	DNA-templated transcription initiation	Interproscan
GO:0006367 all species →	Biological Process	transcription initiation at RNA polymerase II promoter	Interproscan
GO:0031369 all species →	Molecular Function	translation initiation factor binding	Interproscan
GO:0045948 all species →	Biological Process	positive regulation of translational initiation	Interproscan
GO:0060213 all species →	Biological Process	positive regulation of nuclear-transcribed mRNA poly(A) tail shortening	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for PFX34851.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.